Mutagenetix > Incidental Mutation

Incidental Mutation 'R2033:Atp6v1c1'

221542

Institutional Source

Beutler Lab

Gene Symbol

Atp6v1c1

Ensembl Gene

ENSMUSG00000022295

Gene Name

ATPase, H+ transporting, lysosomal V1 subunit C1

Synonyms

1700025B18Rik

MMRRC Submission

040040-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2033 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

38662177-38692690 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 38674210 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000022904 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022904] [ENSMUST00000226533] [ENSMUST00000228820]

AlphaFold

Q9Z1G3

Predicted Effect

probably null
Transcript: ENSMUST00000022904

SMART Domains

Protein: ENSMUSP00000022904
Gene: ENSMUSG00000022295

Domain	Start	End	E-Value	Type
Pfam:V-ATPase_C	4	370	1.2e-168	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226487

Predicted Effect

probably benign
Transcript: ENSMUST00000226533

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227482

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228475

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228486

Predicted Effect

probably benign
Transcript: ENSMUST00000228820

Meta Mutation Damage Score

0.9503

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.5%

Validation Efficiency

96% (53/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of intracellular compartments of eukaryotic cells. V-ATPase dependent acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A and three B subunits, two G subunits plus the C, D, E, F, and H subunits. The V1 domain contains the ATP catalytic site. The V0 domain consists of five different subunits: a, c, c', c'', and d. Additional isoforms of many of the V1 and V0 subunit proteins are encoded by multiple genes or alternatively spliced transcript variants. This gene is one of two genes that encode the V1 domain C subunit proteins and is found ubiquitously. This C subunit is analogous but not homologous to gamma subunit of F-ATPases. Previously, this gene was designated ATP6D. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl3	T	C	4: 144,182,953 (GRCm39)	T172A	probably benign	Het
Bpifc	G	A	10: 85,836,496 (GRCm39)	T3I	possibly damaging	Het
Car12	A	G	9: 66,624,840 (GRCm39)		probably null	Het
Ccrl2	A	G	9: 110,884,938 (GRCm39)	F187L	possibly damaging	Het
Cep250	G	A	2: 155,812,812 (GRCm39)	R544H	probably damaging	Het
Col4a3	T	G	1: 82,695,732 (GRCm39)		probably benign	Het
Cyb5r2	T	C	7: 107,356,114 (GRCm39)		probably null	Het
Elfn2	A	G	15: 78,556,096 (GRCm39)	V817A	probably damaging	Het
Eln	C	T	5: 134,738,960 (GRCm39)		probably null	Het
Eml5	T	C	12: 98,757,645 (GRCm39)	E1896G	possibly damaging	Het
G530012D18Rik	CACAGA	CA	1: 85,504,875 (GRCm39)		probably null	Het
Galnt11	C	T	5: 25,452,536 (GRCm39)	T16I	probably damaging	Het
Gars1	C	T	6: 55,054,708 (GRCm39)	H672Y	probably benign	Het
Gpr155	T	A	2: 73,178,526 (GRCm39)	H726L	probably benign	Het
Inpp1	T	A	1: 52,829,332 (GRCm39)	N229I	possibly damaging	Het
Isg20	A	C	7: 78,566,281 (GRCm39)	I77L	probably damaging	Het
Kit	G	C	5: 75,797,977 (GRCm39)	D422H	possibly damaging	Het
Lonp2	A	G	8: 87,435,570 (GRCm39)	E602G	possibly damaging	Het
Mink1	T	C	11: 70,503,334 (GRCm39)	V1143A	probably damaging	Het
Myh6	A	C	14: 55,201,102 (GRCm39)	L120R	probably benign	Het
Myo18a	T	A	11: 77,733,925 (GRCm39)		probably null	Het
Nphs2	T	C	1: 156,151,308 (GRCm39)	V249A	probably damaging	Het
Npsr1	A	G	9: 24,224,648 (GRCm39)	K342E	probably benign	Het
Nrros	C	T	16: 31,962,975 (GRCm39)	W311*	probably null	Het
Nudt18	G	T	14: 70,817,056 (GRCm39)	G162V	possibly damaging	Het
Odam	A	G	5: 88,040,278 (GRCm39)	D248G	probably benign	Het
Or1e30	T	C	11: 73,678,264 (GRCm39)	S167P	probably benign	Het
Or4c119	A	G	2: 88,987,498 (GRCm39)	V7A	probably damaging	Het
Or51d1	A	G	7: 102,348,369 (GRCm39)	E308G	probably benign	Het
Or51h5	T	C	7: 102,577,615 (GRCm39)	V260A	probably benign	Het
Or8b3	G	T	9: 38,314,669 (GRCm39)	M166I	probably damaging	Het
Pde4b	G	T	4: 102,462,492 (GRCm39)	D723Y	probably benign	Het
Pdzrn3	T	C	6: 101,127,915 (GRCm39)	E917G	probably damaging	Het
Ppip5k1	C	T	2: 121,168,108 (GRCm39)	R715H	probably damaging	Het
Prkdc	T	A	16: 15,505,216 (GRCm39)		probably benign	Het
Ptp4a3	A	G	15: 73,625,618 (GRCm39)	Y21C	probably damaging	Het
Ptprk	C	A	10: 28,468,763 (GRCm39)		probably benign	Het
Rfesd	C	A	13: 76,150,991 (GRCm39)		probably null	Het
Rtel1	A	T	2: 180,993,656 (GRCm39)	K592*	probably null	Het
Siah1a	T	A	8: 87,451,898 (GRCm39)	K195N	probably damaging	Het
Slc5a5	G	T	8: 71,341,231 (GRCm39)	D369E	probably damaging	Het
Slc6a6	A	T	6: 91,701,891 (GRCm39)	I100F	probably benign	Het
Smtn	T	C	11: 3,467,781 (GRCm39)	I913V	probably benign	Het
Stk17b	A	G	1: 53,800,235 (GRCm39)	S248P	probably damaging	Het
Sun1	C	T	5: 139,211,193 (GRCm39)	H149Y	probably damaging	Het
Taar5	T	C	10: 23,846,992 (GRCm39)	I130T	possibly damaging	Het
Tmem132b	G	T	5: 125,826,353 (GRCm39)	V448F	probably damaging	Het
Tmem94	C	A	11: 115,685,154 (GRCm39)	N888K	possibly damaging	Het
Trpc1	T	C	9: 95,588,896 (GRCm39)	N742S	probably damaging	Het
Ttbk2	T	C	2: 120,637,330 (GRCm39)	T112A	probably damaging	Het
Tubb2a	A	T	13: 34,259,439 (GRCm39)	L117Q	probably damaging	Het
Vmn1r60	T	A	7: 5,547,819 (GRCm39)	M94L	probably benign	Het
Vmn2r83	A	G	10: 79,327,653 (GRCm39)	T754A	probably benign	Het

Other mutations in Atp6v1c1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00496:Atp6v1c1	APN	15	38,687,100 (GRCm39)	missense	probably damaging	0.99
IGL01371:Atp6v1c1	APN	15	38,683,204 (GRCm39)	missense	probably benign
IGL02987:Atp6v1c1	APN	15	38,690,806 (GRCm39)	missense	possibly damaging	0.70
P0029:Atp6v1c1	UTSW	15	38,687,146 (GRCm39)	unclassified	probably benign
R0550:Atp6v1c1	UTSW	15	38,683,173 (GRCm39)	splice site	probably benign
R0669:Atp6v1c1	UTSW	15	38,677,772 (GRCm39)	missense	probably benign	0.00
R3021:Atp6v1c1	UTSW	15	38,689,460 (GRCm39)	missense	possibly damaging	0.75
R4475:Atp6v1c1	UTSW	15	38,677,817 (GRCm39)	missense	probably benign	0.03
R4612:Atp6v1c1	UTSW	15	38,677,856 (GRCm39)	missense	probably damaging	1.00
R4798:Atp6v1c1	UTSW	15	38,689,420 (GRCm39)	missense	probably damaging	1.00
R5095:Atp6v1c1	UTSW	15	38,679,657 (GRCm39)	critical splice donor site	probably null
R5600:Atp6v1c1	UTSW	15	38,687,107 (GRCm39)	missense	probably benign	0.17
R6177:Atp6v1c1	UTSW	15	38,674,172 (GRCm39)	nonsense	probably null
R6434:Atp6v1c1	UTSW	15	38,677,790 (GRCm39)	missense	probably damaging	0.99
R6916:Atp6v1c1	UTSW	15	38,677,825 (GRCm39)	missense	probably benign	0.00
R6973:Atp6v1c1	UTSW	15	38,690,794 (GRCm39)	missense	probably damaging	1.00
R7395:Atp6v1c1	UTSW	15	38,691,949 (GRCm39)	makesense	probably null
R7607:Atp6v1c1	UTSW	15	38,683,255 (GRCm39)	critical splice donor site	probably null
R7712:Atp6v1c1	UTSW	15	38,687,049 (GRCm39)	missense	probably benign	0.00
R8830:Atp6v1c1	UTSW	15	38,677,789 (GRCm39)	missense	probably damaging	0.98
R9195:Atp6v1c1	UTSW	15	38,674,198 (GRCm39)	missense	probably damaging	1.00
R9640:Atp6v1c1	UTSW	15	38,689,381 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGTAGACCCTTCAGATAAAGATACACC -3'
(R):5'- CATGAACATGCTTGAACCATAGG -3'

Sequencing Primer
(F):5'- GGCTCATCTGGATCACACAGTAAG -3'
(R):5'- TGAACCATAGGTGCACATGTG -3'

Posted On

2014-08-25