Incidental Mutation 'R2047:Ccdc121rt2'
ID 222084
Institutional Source Beutler Lab
Gene Symbol Ccdc121rt2
Ensembl Gene ENSMUSG00000072722
Gene Name coiled-coil domain containing 121, retrogene 2
Synonyms Gm6588
MMRRC Submission 040054-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.053) question?
Stock # R2047 (G1)
Quality Score 225
Status Validated
Chromosome 5
Chromosomal Location 112597292-112599604 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 112598575 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 374 (N374S)
Ref Sequence ENSEMBL: ENSMUSP00000098441 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075387] [ENSMUST00000079491] [ENSMUST00000100882] [ENSMUST00000197425] [ENSMUST00000212480] [ENSMUST00000212758]
AlphaFold E9Q3K0
Predicted Effect probably benign
Transcript: ENSMUST00000075387
SMART Domains Protein: ENSMUSP00000074847
Gene: ENSMUSG00000058153

DomainStartEndE-ValueType
signal peptide 1 31 N/A INTRINSIC
low complexity region 47 59 N/A INTRINSIC
low complexity region 191 215 N/A INTRINSIC
CUB 221 329 3.62e-8 SMART
CCP 333 388 1.01e-11 SMART
CUB 392 502 3.75e-15 SMART
CCP 507 564 1.41e-10 SMART
CUB 568 679 4.87e-23 SMART
CCP 685 740 4.95e-15 SMART
CCP 746 805 3.07e-11 SMART
CCP 813 870 8.04e-15 SMART
low complexity region 880 891 N/A INTRINSIC
transmembrane domain 895 917 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000079491
SMART Domains Protein: ENSMUSP00000078454
Gene: ENSMUSG00000058153

DomainStartEndE-ValueType
signal peptide 1 31 N/A INTRINSIC
low complexity region 47 59 N/A INTRINSIC
low complexity region 191 215 N/A INTRINSIC
CUB 221 329 3.62e-8 SMART
CCP 333 388 1.01e-11 SMART
CUB 392 502 3.75e-15 SMART
CCP 507 564 1.41e-10 SMART
CUB 568 679 4.87e-23 SMART
CCP 685 740 4.95e-15 SMART
CCP 746 805 3.07e-11 SMART
CCP 813 870 8.04e-15 SMART
low complexity region 878 892 N/A INTRINSIC
transmembrane domain 896 918 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000100882
AA Change: N374S

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000098441
Gene: ENSMUSG00000072722
AA Change: N374S

DomainStartEndE-ValueType
coiled coil region 159 180 N/A INTRINSIC
Pfam:DUF4515 194 399 9.5e-82 PFAM
low complexity region 403 425 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000197425
SMART Domains Protein: ENSMUSP00000143395
Gene: ENSMUSG00000058153

DomainStartEndE-ValueType
signal peptide 1 31 N/A INTRINSIC
low complexity region 47 59 N/A INTRINSIC
low complexity region 191 215 N/A INTRINSIC
CUB 221 329 3.62e-8 SMART
CCP 333 388 1.01e-11 SMART
CUB 392 502 3.75e-15 SMART
CCP 507 564 1.41e-10 SMART
CUB 568 679 4.87e-23 SMART
CCP 685 740 4.95e-15 SMART
CCP 746 805 3.07e-11 SMART
low complexity region 815 826 N/A INTRINSIC
transmembrane domain 830 852 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000200575
Predicted Effect probably benign
Transcript: ENSMUST00000212480
Predicted Effect probably benign
Transcript: ENSMUST00000212758
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.0%
  • 20x: 94.4%
Validation Efficiency 100% (57/57)
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933402N03Rik A G 7: 130,747,836 (GRCm39) F52S probably damaging Het
Acot12 T C 13: 91,931,122 (GRCm39) S457P probably damaging Het
Adcy5 G A 16: 35,110,478 (GRCm39) V882M possibly damaging Het
Ahnak A G 19: 8,991,664 (GRCm39) D4316G possibly damaging Het
Aldh1l2 G A 10: 83,342,607 (GRCm39) A401V probably damaging Het
Apol7e A G 15: 77,601,810 (GRCm39) H136R probably benign Het
Arl5a A G 2: 52,302,072 (GRCm39) probably null Het
Asns G T 6: 7,680,093 (GRCm39) A341E probably damaging Het
C7 A G 15: 5,075,143 (GRCm39) L183P probably damaging Het
Cacng2 C T 15: 78,003,037 (GRCm39) A19T probably damaging Het
Ccr4 A G 9: 114,321,633 (GRCm39) F144S probably damaging Het
Ckap2 A G 8: 22,658,763 (GRCm39) V660A probably benign Het
Cramp1 A T 17: 25,222,189 (GRCm39) Y176* probably null Het
Dgki A G 6: 36,890,581 (GRCm39) S922P possibly damaging Het
Drd5 C T 5: 38,477,679 (GRCm39) S224L probably damaging Het
Ei24 T C 9: 36,691,459 (GRCm39) K341E probably benign Het
Eno2 A T 6: 124,744,659 (GRCm39) probably benign Het
Epb41l4a T C 18: 33,961,259 (GRCm39) N425S probably benign Het
F13b T G 1: 139,435,961 (GRCm39) C256G probably damaging Het
Gp6 A T 7: 4,376,270 (GRCm39) probably benign Het
H2-Q7 A T 17: 35,659,123 (GRCm39) R191S probably damaging Het
Ivns1abp T A 1: 151,227,382 (GRCm39) S63R possibly damaging Het
Kcnj16 A G 11: 110,915,946 (GRCm39) probably null Het
Lpcat4 T C 2: 112,075,142 (GRCm39) probably null Het
Lrrc14b T C 13: 74,511,561 (GRCm39) K173R probably benign Het
Maml3 C A 3: 51,597,866 (GRCm39) R939S probably damaging Het
Mrgpra2b C T 7: 47,113,908 (GRCm39) V249I probably benign Het
Mrpl46 T A 7: 78,431,312 (GRCm39) Y82F probably damaging Het
Mthfs T A 9: 89,097,356 (GRCm39) I71N probably damaging Het
Nectin4 T C 1: 171,212,720 (GRCm39) V351A possibly damaging Het
Npas3 T C 12: 54,115,612 (GRCm39) F827L probably damaging Het
Nrp1 G A 8: 129,224,577 (GRCm39) probably benign Het
Ocln C A 13: 100,671,632 (GRCm39) A242S probably damaging Het
Or10ad1c T A 15: 98,084,920 (GRCm39) T253S probably damaging Het
Or13g1 G A 7: 85,956,012 (GRCm39) T103I probably damaging Het
Or5d37 A T 2: 87,924,237 (GRCm39) N14K probably benign Het
Pappa T C 4: 65,149,378 (GRCm39) probably benign Het
Ptpn6 T C 6: 124,698,752 (GRCm39) T480A probably benign Het
Pycr1 A T 11: 120,532,512 (GRCm39) D168E possibly damaging Het
Rnf6 T C 5: 146,148,674 (GRCm39) T126A probably damaging Het
Slc25a39 G A 11: 102,296,657 (GRCm39) probably benign Het
Slc35f4 G T 14: 49,541,029 (GRCm39) probably benign Het
Sppl2a C T 2: 126,768,772 (GRCm39) A112T probably damaging Het
Sptbn1 A C 11: 30,088,360 (GRCm39) probably benign Het
Sqle T C 15: 59,197,907 (GRCm39) Y376H probably benign Het
Terb1 A T 8: 105,212,094 (GRCm39) Y296N probably damaging Het
Ttbk2 T C 2: 120,579,397 (GRCm39) H506R probably damaging Het
Ttn T C 2: 76,737,879 (GRCm39) D4220G probably benign Het
Tub A G 7: 108,625,939 (GRCm39) D230G probably benign Het
Ube2d3 T A 3: 135,170,967 (GRCm39) I137K probably benign Het
Vldlr G T 19: 27,212,238 (GRCm39) C84F probably damaging Het
Vmn1r54 A T 6: 90,246,970 (GRCm39) I295F probably damaging Het
Vmn2r56 A G 7: 12,466,918 (GRCm39) S39P probably damaging Het
Zfp358 A G 8: 3,545,934 (GRCm39) H172R probably damaging Het
Zfp619 T C 7: 39,187,062 (GRCm39) C1031R probably damaging Het
Zfp777 A G 6: 48,021,280 (GRCm39) I114T probably benign Het
Other mutations in Ccdc121rt2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02323:Ccdc121rt2 APN 5 112,597,600 (GRCm39) missense probably benign 0.22
R0785:Ccdc121rt2 UTSW 5 112,598,434 (GRCm39) missense probably benign 0.00
R1938:Ccdc121rt2 UTSW 5 112,597,667 (GRCm39) nonsense probably null
R4116:Ccdc121rt2 UTSW 5 112,598,377 (GRCm39) missense probably damaging 0.98
R4608:Ccdc121rt2 UTSW 5 112,597,764 (GRCm39) missense possibly damaging 0.85
R4841:Ccdc121rt2 UTSW 5 112,598,106 (GRCm39) nonsense probably null
R4842:Ccdc121rt2 UTSW 5 112,598,106 (GRCm39) nonsense probably null
R6301:Ccdc121rt2 UTSW 5 112,598,334 (GRCm39) missense possibly damaging 0.47
R6418:Ccdc121rt2 UTSW 5 112,598,019 (GRCm39) missense probably benign 0.05
R7395:Ccdc121rt2 UTSW 5 112,598,035 (GRCm39) missense possibly damaging 0.93
R7799:Ccdc121rt2 UTSW 5 112,597,698 (GRCm39) missense not run
R7991:Ccdc121rt2 UTSW 5 112,598,791 (GRCm39) missense probably benign
R8188:Ccdc121rt2 UTSW 5 112,597,993 (GRCm39) missense possibly damaging 0.62
R8343:Ccdc121rt2 UTSW 5 112,598,653 (GRCm39) missense probably benign 0.01
R8773:Ccdc121rt2 UTSW 5 112,597,681 (GRCm39) missense probably benign 0.00
R8966:Ccdc121rt2 UTSW 5 112,598,103 (GRCm39) missense probably damaging 0.99
R9089:Ccdc121rt2 UTSW 5 112,598,757 (GRCm39) missense probably damaging 0.97
RF013:Ccdc121rt2 UTSW 5 112,597,937 (GRCm39) missense probably benign 0.00
X0062:Ccdc121rt2 UTSW 5 112,598,445 (GRCm39) missense probably benign 0.01
Z1176:Ccdc121rt2 UTSW 5 112,597,741 (GRCm39) missense probably benign
Z1177:Ccdc121rt2 UTSW 5 112,598,827 (GRCm39) frame shift probably null
Z1177:Ccdc121rt2 UTSW 5 112,597,872 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- TCTGAACCTGCTGGAGTCTG -3'
(R):5'- TGTAGTGTCCCAGCTTCAGC -3'

Sequencing Primer
(F):5'- AGTCTGGAGAGGACATCACC -3'
(R):5'- ACGTGGCAGCCATTTCTTAG -3'
Posted On 2014-08-25