Incidental Mutation 'R2047:Vmn2r56'
ID 222101
Institutional Source Beutler Lab
Gene Symbol Vmn2r56
Ensembl Gene ENSMUSG00000090762
Gene Name vomeronasal 2, receptor 56
Synonyms EG629079
MMRRC Submission 040054-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.066) question?
Stock # R2047 (G1)
Quality Score 225
Status Validated
Chromosome 7
Chromosomal Location 12427787-12468785 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 12466918 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Proline at position 39 (S39P)
Ref Sequence ENSEMBL: ENSMUSP00000129566 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000163852]
AlphaFold A0A3B2WBA1
Predicted Effect probably damaging
Transcript: ENSMUST00000163852
AA Change: S39P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000129566
Gene: ENSMUSG00000090762
AA Change: S39P

DomainStartEndE-ValueType
Pfam:ANF_receptor 5 397 1.9e-55 PFAM
Pfam:NCD3G 439 492 6.4e-20 PFAM
Pfam:7tm_3 523 760 1.3e-53 PFAM
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.0%
  • 20x: 94.4%
Validation Efficiency 100% (57/57)
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933402N03Rik A G 7: 130,747,836 (GRCm39) F52S probably damaging Het
Acot12 T C 13: 91,931,122 (GRCm39) S457P probably damaging Het
Adcy5 G A 16: 35,110,478 (GRCm39) V882M possibly damaging Het
Ahnak A G 19: 8,991,664 (GRCm39) D4316G possibly damaging Het
Aldh1l2 G A 10: 83,342,607 (GRCm39) A401V probably damaging Het
Apol7e A G 15: 77,601,810 (GRCm39) H136R probably benign Het
Arl5a A G 2: 52,302,072 (GRCm39) probably null Het
Asns G T 6: 7,680,093 (GRCm39) A341E probably damaging Het
C7 A G 15: 5,075,143 (GRCm39) L183P probably damaging Het
Cacng2 C T 15: 78,003,037 (GRCm39) A19T probably damaging Het
Ccdc121rt2 A G 5: 112,598,575 (GRCm39) N374S probably benign Het
Ccr4 A G 9: 114,321,633 (GRCm39) F144S probably damaging Het
Ckap2 A G 8: 22,658,763 (GRCm39) V660A probably benign Het
Cramp1 A T 17: 25,222,189 (GRCm39) Y176* probably null Het
Dgki A G 6: 36,890,581 (GRCm39) S922P possibly damaging Het
Drd5 C T 5: 38,477,679 (GRCm39) S224L probably damaging Het
Ei24 T C 9: 36,691,459 (GRCm39) K341E probably benign Het
Eno2 A T 6: 124,744,659 (GRCm39) probably benign Het
Epb41l4a T C 18: 33,961,259 (GRCm39) N425S probably benign Het
F13b T G 1: 139,435,961 (GRCm39) C256G probably damaging Het
Gp6 A T 7: 4,376,270 (GRCm39) probably benign Het
H2-Q7 A T 17: 35,659,123 (GRCm39) R191S probably damaging Het
Ivns1abp T A 1: 151,227,382 (GRCm39) S63R possibly damaging Het
Kcnj16 A G 11: 110,915,946 (GRCm39) probably null Het
Lpcat4 T C 2: 112,075,142 (GRCm39) probably null Het
Lrrc14b T C 13: 74,511,561 (GRCm39) K173R probably benign Het
Maml3 C A 3: 51,597,866 (GRCm39) R939S probably damaging Het
Mrgpra2b C T 7: 47,113,908 (GRCm39) V249I probably benign Het
Mrpl46 T A 7: 78,431,312 (GRCm39) Y82F probably damaging Het
Mthfs T A 9: 89,097,356 (GRCm39) I71N probably damaging Het
Nectin4 T C 1: 171,212,720 (GRCm39) V351A possibly damaging Het
Npas3 T C 12: 54,115,612 (GRCm39) F827L probably damaging Het
Nrp1 G A 8: 129,224,577 (GRCm39) probably benign Het
Ocln C A 13: 100,671,632 (GRCm39) A242S probably damaging Het
Or10ad1c T A 15: 98,084,920 (GRCm39) T253S probably damaging Het
Or13g1 G A 7: 85,956,012 (GRCm39) T103I probably damaging Het
Or5d37 A T 2: 87,924,237 (GRCm39) N14K probably benign Het
Pappa T C 4: 65,149,378 (GRCm39) probably benign Het
Ptpn6 T C 6: 124,698,752 (GRCm39) T480A probably benign Het
Pycr1 A T 11: 120,532,512 (GRCm39) D168E possibly damaging Het
Rnf6 T C 5: 146,148,674 (GRCm39) T126A probably damaging Het
Slc25a39 G A 11: 102,296,657 (GRCm39) probably benign Het
Slc35f4 G T 14: 49,541,029 (GRCm39) probably benign Het
Sppl2a C T 2: 126,768,772 (GRCm39) A112T probably damaging Het
Sptbn1 A C 11: 30,088,360 (GRCm39) probably benign Het
Sqle T C 15: 59,197,907 (GRCm39) Y376H probably benign Het
Terb1 A T 8: 105,212,094 (GRCm39) Y296N probably damaging Het
Ttbk2 T C 2: 120,579,397 (GRCm39) H506R probably damaging Het
Ttn T C 2: 76,737,879 (GRCm39) D4220G probably benign Het
Tub A G 7: 108,625,939 (GRCm39) D230G probably benign Het
Ube2d3 T A 3: 135,170,967 (GRCm39) I137K probably benign Het
Vldlr G T 19: 27,212,238 (GRCm39) C84F probably damaging Het
Vmn1r54 A T 6: 90,246,970 (GRCm39) I295F probably damaging Het
Zfp358 A G 8: 3,545,934 (GRCm39) H172R probably damaging Het
Zfp619 T C 7: 39,187,062 (GRCm39) C1031R probably damaging Het
Zfp777 A G 6: 48,021,280 (GRCm39) I114T probably benign Het
Other mutations in Vmn2r56
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00902:Vmn2r56 APN 7 12,449,426 (GRCm39) missense probably benign 0.38
IGL01060:Vmn2r56 APN 7 12,447,016 (GRCm39) missense probably damaging 0.97
IGL01433:Vmn2r56 APN 7 12,449,541 (GRCm39) missense probably benign
IGL01859:Vmn2r56 APN 7 12,449,932 (GRCm39) missense probably damaging 1.00
IGL01874:Vmn2r56 APN 7 12,449,602 (GRCm39) missense probably benign 0.03
IGL02208:Vmn2r56 APN 7 12,449,408 (GRCm39) missense probably benign 0.01
PIT4445001:Vmn2r56 UTSW 7 12,449,153 (GRCm39) critical splice donor site probably null
R0077:Vmn2r56 UTSW 7 12,449,332 (GRCm39) missense probably benign 0.01
R0278:Vmn2r56 UTSW 7 12,449,644 (GRCm39) missense probably damaging 0.99
R0512:Vmn2r56 UTSW 7 12,449,350 (GRCm39) missense probably benign
R0658:Vmn2r56 UTSW 7 12,444,235 (GRCm39) missense probably benign 0.10
R0789:Vmn2r56 UTSW 7 12,466,762 (GRCm39) missense probably damaging 1.00
R1534:Vmn2r56 UTSW 7 12,427,954 (GRCm39) missense probably benign
R1731:Vmn2r56 UTSW 7 12,466,972 (GRCm39) missense probably benign
R1817:Vmn2r56 UTSW 7 12,449,542 (GRCm39) missense probably benign
R2139:Vmn2r56 UTSW 7 12,446,890 (GRCm39) nonsense probably null
R2160:Vmn2r56 UTSW 7 12,428,146 (GRCm39) missense probably benign 0.43
R2449:Vmn2r56 UTSW 7 12,428,082 (GRCm39) missense possibly damaging 0.67
R2877:Vmn2r56 UTSW 7 12,444,954 (GRCm39) missense probably benign
R2878:Vmn2r56 UTSW 7 12,444,954 (GRCm39) missense probably benign
R4910:Vmn2r56 UTSW 7 12,449,462 (GRCm39) missense possibly damaging 0.64
R5072:Vmn2r56 UTSW 7 12,427,983 (GRCm39) missense probably benign 0.40
R5340:Vmn2r56 UTSW 7 12,449,799 (GRCm39) missense probably damaging 1.00
R5697:Vmn2r56 UTSW 7 12,449,917 (GRCm39) missense probably damaging 1.00
R5798:Vmn2r56 UTSW 7 12,446,892 (GRCm39) missense probably benign 0.00
R6166:Vmn2r56 UTSW 7 12,427,947 (GRCm39) missense probably damaging 1.00
R6290:Vmn2r56 UTSW 7 12,428,809 (GRCm39) missense probably damaging 1.00
R6458:Vmn2r56 UTSW 7 12,427,984 (GRCm39) missense probably damaging 0.99
R6751:Vmn2r56 UTSW 7 12,428,719 (GRCm39) missense probably benign
R6978:Vmn2r56 UTSW 7 12,449,333 (GRCm39) missense probably benign 0.01
R7090:Vmn2r56 UTSW 7 12,449,254 (GRCm39) missense probably damaging 1.00
R7200:Vmn2r56 UTSW 7 12,444,259 (GRCm39) missense probably damaging 1.00
R7861:Vmn2r56 UTSW 7 12,449,351 (GRCm39) missense probably benign 0.00
R8222:Vmn2r56 UTSW 7 12,444,960 (GRCm39) missense probably benign
R8282:Vmn2r56 UTSW 7 12,449,601 (GRCm39) nonsense probably null
R8786:Vmn2r56 UTSW 7 12,449,393 (GRCm39) missense probably damaging 1.00
R8970:Vmn2r56 UTSW 7 12,428,632 (GRCm39) missense probably damaging 1.00
R9230:Vmn2r56 UTSW 7 12,444,237 (GRCm39) missense possibly damaging 0.70
RF002:Vmn2r56 UTSW 7 12,428,757 (GRCm39) missense probably benign 0.02
Predicted Primers PCR Primer
(F):5'- CACTAAACAATAAGGCGTTGTGC -3'
(R):5'- ACTCAGATCACTTGAGTCACAGTG -3'

Sequencing Primer
(F):5'- GCAACTCACCTGGGGAAACTTG -3'
(R):5'- GATCACTTGAGTCACAGTGTTCATTC -3'
Posted On 2014-08-25