Mutagenetix > Incidental Mutation

Incidental Mutation 'R2014:Tet3'

222564

Institutional Source

Beutler Lab

Gene Symbol

Tet3

Ensembl Gene

ENSMUSG00000034832

Gene Name

tet methylcytosine dioxygenase 3

Synonyms

B430006D22Rik, D230004J03Rik

MMRRC Submission

040023-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.640) question?

Stock #

R2014 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

83339355-83434190 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 83363057 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 705 (E705G)

Ref Sequence

ENSEMBL: ENSMUSP00000087049 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089622] [ENSMUST00000186548]

AlphaFold

Q8BG87

Predicted Effect

probably damaging
Transcript: ENSMUST00000089622
AA Change: E705G

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000087049
Gene: ENSMUSG00000034832
AA Change: E705G

Domain	Start	End	E-Value	Type
low complexity region	27	38	N/A	INTRINSIC
low complexity region	66	77	N/A	INTRINSIC
low complexity region	115	126	N/A	INTRINSIC
internal_repeat_1	160	277	4.9e-5	PROSPERO
low complexity region	279	297	N/A	INTRINSIC
low complexity region	359	371	N/A	INTRINSIC
low complexity region	418	456	N/A	INTRINSIC
Tet_JBP	858	1570	N/A	SMART
coiled coil region	1579	1603	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000186548
AA Change: E840G

PolyPhen 2 Score 0.081 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000139630
Gene: ENSMUSG00000034832
AA Change: E840G

Domain	Start	End	E-Value	Type
Pfam:zf-CXXC	49	89	8e-6	PFAM
low complexity region	162	173	N/A	INTRINSIC
low complexity region	201	212	N/A	INTRINSIC
low complexity region	250	261	N/A	INTRINSIC
internal_repeat_1	295	412	5.5e-5	PROSPERO
low complexity region	414	432	N/A	INTRINSIC
low complexity region	494	506	N/A	INTRINSIC
low complexity region	553	591	N/A	INTRINSIC
Tet_JBP	993	1705	N/A	SMART
coiled coil region	1714	1738	N/A	INTRINSIC

Meta Mutation Damage Score

0.1424

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.8%
20x: 93.9%

Validation Efficiency

96% (105/109)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Members of the ten-eleven translocation (TET) gene family, including TET3, play a role in the DNA methylation process (Langemeijer et al., 2009 [PubMed 19923888]).[supplied by OMIM, Nov 2010]
PHENOTYPE: Mice inheriting a null allele from a germ cell conditional null mother display impaired reprogramming of the paternal genome resulting in reduced embryo viability. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 108 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700122O11Rik	T	G	17: 48,347,723 (GRCm39)	T194P	possibly damaging	Het
Aadacl4fm5	A	T	4: 144,506,295 (GRCm39)	L132Q	probably damaging	Het
Acsbg2	T	A	17: 57,160,855 (GRCm39)	K263M	possibly damaging	Het
Adcy8	C	T	15: 64,639,727 (GRCm39)	G678S	probably benign	Het
Adgrl2	C	T	3: 148,532,111 (GRCm39)	G1041R	probably damaging	Het
Ahnak	T	C	19: 8,990,545 (GRCm39)	I3943T	probably damaging	Het
Aire	T	C	10: 77,878,792 (GRCm39)	D85G	probably damaging	Het
Alkbh8	C	T	9: 3,343,216 (GRCm39)	Q36*	probably null	Het
Amer3	T	C	1: 34,618,525 (GRCm39)		probably benign	Het
Angptl8	T	C	9: 21,748,358 (GRCm39)		probably null	Het
Ankmy1	T	C	1: 92,812,863 (GRCm39)	D482G	probably benign	Het
Apc	A	G	18: 34,448,644 (GRCm39)	I1813V	probably damaging	Het
Asb13	T	G	13: 3,699,512 (GRCm39)		probably null	Het
Blm	T	C	7: 80,152,147 (GRCm39)	E600G	probably damaging	Het
Cd163	G	T	6: 124,302,457 (GRCm39)	W1007L	probably damaging	Het
Cdr1	A	G	X: 60,228,420 (GRCm39)	F249L	probably benign	Het
Cp	A	G	3: 20,041,598 (GRCm39)	K44E	probably benign	Het
Crtap	C	A	9: 114,210,653 (GRCm39)		probably null	Het
Ctsk	A	G	3: 95,414,003 (GRCm39)	D250G	probably damaging	Het
Dcp2	T	C	18: 44,543,363 (GRCm39)	V307A	probably benign	Het
Dnah6	T	A	6: 73,150,402 (GRCm39)	D787V	probably damaging	Het
Dtx3l	G	A	16: 35,756,797 (GRCm39)	H129Y	probably benign	Het
Ece2	A	G	16: 20,461,067 (GRCm39)	T442A	probably benign	Het
Espl1	C	T	15: 102,231,149 (GRCm39)	R17*	probably null	Het
Espn	G	T	4: 152,217,416 (GRCm39)		probably null	Het
Fam20b	C	T	1: 156,533,511 (GRCm39)	R35Q	possibly damaging	Het
Fga	A	G	3: 82,940,064 (GRCm39)	I573V	probably damaging	Het
Fmo5	A	G	3: 97,542,998 (GRCm39)	K103E	possibly damaging	Het
Frem1	A	T	4: 82,924,089 (GRCm39)	V291D	probably damaging	Het
Gabbr1	A	G	17: 37,367,674 (GRCm39)		probably null	Het
Gjb6	T	C	14: 57,362,213 (GRCm39)	H16R	probably damaging	Het
Grina	T	C	15: 76,132,734 (GRCm39)	V167A	probably damaging	Het
Gulo	T	A	14: 66,246,496 (GRCm39)	M1L	probably benign	Het
Hcfc2	A	G	10: 82,574,814 (GRCm39)	N618D	probably benign	Het
Heatr5b	T	C	17: 79,121,613 (GRCm39)	D704G	probably damaging	Het
Hlcs	A	G	16: 94,063,599 (GRCm39)	V487A	probably benign	Het
Hps1	G	A	19: 42,750,951 (GRCm39)	P350S	probably benign	Het
Hspa9	A	T	18: 35,079,701 (GRCm39)	Y243N	probably damaging	Het
Igll1	A	G	16: 16,681,639 (GRCm39)	S39P	probably benign	Het
Kif21b	T	C	1: 136,076,020 (GRCm39)	F270L	probably damaging	Het
Kirrel1	C	T	3: 86,996,458 (GRCm39)	M380I	probably null	Het
Krt27	A	G	11: 99,240,318 (GRCm39)	V200A	probably benign	Het
Lama3	T	C	18: 12,657,778 (GRCm39)		probably benign	Het
Lmcd1	T	C	6: 112,305,702 (GRCm39)	W268R	probably damaging	Het
Lmo2	T	C	2: 103,811,407 (GRCm39)	Y147H	probably damaging	Het
Mamdc4	T	A	2: 25,453,584 (GRCm39)	D1195V	probably damaging	Het
Map2	T	C	1: 66,455,295 (GRCm39)	V1395A	possibly damaging	Het
Map3k20	C	T	2: 72,268,604 (GRCm39)	T537M	probably benign	Het
Mdga1	A	G	17: 30,068,287 (GRCm39)	S276P	probably damaging	Het
Mep1a	T	C	17: 43,808,797 (GRCm39)	N85D	probably benign	Het
Mettl16	A	G	11: 74,708,195 (GRCm39)	S425G	probably benign	Het
Mthfd1l	A	G	10: 3,997,894 (GRCm39)	T622A	probably benign	Het
Nbeal2	G	A	9: 110,463,139 (GRCm39)	L1309F	probably benign	Het
Nde1	A	T	16: 13,987,321 (GRCm39)		probably benign	Het
Nhsl1	A	T	10: 18,387,340 (GRCm39)	R205W	probably damaging	Het
Nlrc5	A	G	8: 95,252,138 (GRCm39)		probably benign	Het
Notch3	C	A	17: 32,376,974 (GRCm39)	E310D	probably benign	Het
Or2f1	A	G	6: 42,721,784 (GRCm39)	E271G	probably damaging	Het
Or4p19	T	C	2: 88,242,388 (GRCm39)	T205A	probably benign	Het
Or5ak24	T	A	2: 85,260,696 (GRCm39)	H159L	possibly damaging	Het
Or7a39	T	C	10: 78,715,222 (GRCm39)	I72T	possibly damaging	Het
Osbpl5	C	A	7: 143,295,429 (GRCm39)	C11F	probably damaging	Het
P4hb	T	C	11: 120,453,522 (GRCm39)	E381G	probably damaging	Het
Pax4	A	G	6: 28,446,209 (GRCm39)	Y95H	probably benign	Het
Pdia3	T	C	2: 121,265,301 (GRCm39)	V390A	probably damaging	Het
Pigv	A	C	4: 133,390,034 (GRCm39)	D49E	possibly damaging	Het
Pik3c2a	T	A	7: 115,950,166 (GRCm39)		probably null	Het
Plxnb1	T	A	9: 108,935,687 (GRCm39)		probably benign	Het
Polq	A	G	16: 36,898,728 (GRCm39)	T2163A	probably damaging	Het
Pou5f2	T	C	13: 78,173,972 (GRCm39)	S305P	probably benign	Het
Ppm1h	A	T	10: 122,756,630 (GRCm39)	H425L	possibly damaging	Het
Ppp1r13b	G	T	12: 111,800,222 (GRCm39)	D518E	probably benign	Het
Prf1	A	T	10: 61,139,674 (GRCm39)	D544V	probably benign	Het
Prl3b1	T	C	13: 27,431,948 (GRCm39)	F158L	probably benign	Het
Prss41	C	T	17: 24,056,464 (GRCm39)		probably null	Het
Prune2	T	G	19: 17,097,887 (GRCm39)	N1130K	probably damaging	Het
Ptgdr2	T	C	19: 10,917,789 (GRCm39)	F102S	probably damaging	Het
Ptprq	T	G	10: 107,503,283 (GRCm39)	K792Q	probably damaging	Het
Pttg1ip2	T	A	5: 5,505,964 (GRCm39)	I106L	probably benign	Het
Rcbtb2	T	C	14: 73,411,826 (GRCm39)		probably benign	Het
Rgs14	C	A	13: 55,531,513 (GRCm39)	S479*	probably null	Het
Sash1	A	T	10: 8,605,177 (GRCm39)	V1071D	probably benign	Het
Sdsl	G	A	5: 120,601,218 (GRCm39)	T18M	probably damaging	Het
Sepsecs	T	A	5: 52,804,966 (GRCm39)	Q365L	probably benign	Het
Sh2d4a	A	T	8: 68,783,735 (GRCm39)	Q223L	probably damaging	Het
Slc14a2	T	C	18: 78,193,601 (GRCm39)		probably benign	Het
Slc5a9	A	C	4: 111,753,546 (GRCm39)	S52A	possibly damaging	Het
Slc6a18	C	A	13: 73,823,844 (GRCm39)	V99L	probably benign	Het
Smarca2	T	C	19: 26,661,305 (GRCm39)	S967P	possibly damaging	Het
Tbc1d22a	C	T	15: 86,183,885 (GRCm39)	T248M	probably damaging	Het
Tcte1	A	T	17: 45,852,237 (GRCm39)	N490I	probably benign	Het
Tfeb	T	A	17: 48,102,484 (GRCm39)	H450Q	probably damaging	Het
Tmem248	G	A	5: 130,260,653 (GRCm39)	E73K	probably damaging	Het
Trip12	A	T	1: 84,738,587 (GRCm39)	L756*	probably null	Het
Try5	C	T	6: 41,291,585 (GRCm39)		probably null	Het
Tsc1	A	T	2: 28,555,649 (GRCm39)		probably benign	Het
Tspear	G	A	10: 77,710,954 (GRCm39)		probably benign	Het
Ttc6	T	C	12: 57,623,003 (GRCm39)	I134T	possibly damaging	Het
Ttn	T	A	2: 76,585,640 (GRCm39)		probably null	Het
Ube3b	A	G	5: 114,549,210 (GRCm39)	E738G	probably damaging	Het
Usp36	T	C	11: 118,153,334 (GRCm39)		probably benign	Het
Vmn2r71	T	A	7: 85,269,845 (GRCm39)	M452K	probably benign	Het
Vps13b	T	C	15: 35,607,288 (GRCm39)	S1074P	probably damaging	Het
Vps13d	A	G	4: 144,835,078 (GRCm39)	S2757P	probably damaging	Het
Vwde	C	A	6: 13,208,337 (GRCm39)	G182C	possibly damaging	Het
Wdr33	T	C	18: 31,966,652 (GRCm39)	V164A	probably damaging	Het
Zkscan16	A	G	4: 58,956,525 (GRCm39)	Y269C	possibly damaging	Het
Zup1	A	G	10: 33,805,820 (GRCm39)	V437A	possibly damaging	Het

Other mutations in Tet3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00929:Tet3	APN	6	83,345,637 (GRCm39)	missense	probably benign	0.06
IGL01396:Tet3	APN	6	83,346,620 (GRCm39)	nonsense	probably null
IGL02344:Tet3	APN	6	83,380,815 (GRCm39)	missense	probably benign	0.04
IGL02987:Tet3	APN	6	83,345,074 (GRCm39)	missense	probably damaging	0.99
IGL03126:Tet3	APN	6	83,353,769 (GRCm39)	missense	probably damaging	1.00
IGL03155:Tet3	APN	6	83,345,365 (GRCm39)	missense	probably damaging	1.00
IGL03286:Tet3	APN	6	83,352,760 (GRCm39)	missense	probably damaging	1.00
Reedy	UTSW	6	83,345,066 (GRCm39)	nonsense	probably null
P0033:Tet3	UTSW	6	83,345,494 (GRCm39)	missense	probably damaging	1.00
R0131:Tet3	UTSW	6	83,345,770 (GRCm39)	missense	probably damaging	1.00
R0295:Tet3	UTSW	6	83,346,121 (GRCm39)	missense	probably benign	0.14
R0504:Tet3	UTSW	6	83,350,776 (GRCm39)	missense	probably damaging	1.00
R0524:Tet3	UTSW	6	83,356,924 (GRCm39)	missense	probably damaging	1.00
R1061:Tet3	UTSW	6	83,350,305 (GRCm39)	missense	probably damaging	0.99
R1160:Tet3	UTSW	6	83,381,434 (GRCm39)	missense	probably benign	0.00
R1550:Tet3	UTSW	6	83,363,010 (GRCm39)	missense	probably damaging	0.97
R1640:Tet3	UTSW	6	83,346,297 (GRCm39)	missense	probably benign	0.44
R1658:Tet3	UTSW	6	83,346,039 (GRCm39)	missense	probably benign	0.44
R1746:Tet3	UTSW	6	83,345,050 (GRCm39)	missense	probably damaging	1.00
R1761:Tet3	UTSW	6	83,380,641 (GRCm39)	missense	probably damaging	0.99
R1832:Tet3	UTSW	6	83,380,627 (GRCm39)	missense	probably benign
R1835:Tet3	UTSW	6	83,381,145 (GRCm39)	missense	possibly damaging	0.95
R1932:Tet3	UTSW	6	83,381,361 (GRCm39)	missense	possibly damaging	0.94
R2230:Tet3	UTSW	6	83,346,453 (GRCm39)	missense	probably damaging	1.00
R2232:Tet3	UTSW	6	83,346,453 (GRCm39)	missense	probably damaging	1.00
R2922:Tet3	UTSW	6	83,345,494 (GRCm39)	missense	probably damaging	1.00
R3429:Tet3	UTSW	6	83,380,401 (GRCm39)	missense	probably damaging	1.00
R3430:Tet3	UTSW	6	83,380,401 (GRCm39)	missense	probably damaging	1.00
R4291:Tet3	UTSW	6	83,350,181 (GRCm39)	missense	probably damaging	1.00
R4349:Tet3	UTSW	6	83,380,257 (GRCm39)	missense	probably benign
R4809:Tet3	UTSW	6	83,379,928 (GRCm39)	missense	probably benign
R4846:Tet3	UTSW	6	83,353,865 (GRCm39)	nonsense	probably null
R5039:Tet3	UTSW	6	83,352,878 (GRCm39)	missense	probably damaging	1.00
R5233:Tet3	UTSW	6	83,363,045 (GRCm39)	missense	probably damaging	1.00
R5363:Tet3	UTSW	6	83,353,746 (GRCm39)	critical splice donor site	probably null
R5880:Tet3	UTSW	6	83,347,532 (GRCm39)	missense	probably damaging	1.00
R6270:Tet3	UTSW	6	83,352,773 (GRCm39)	missense	possibly damaging	0.86
R6277:Tet3	UTSW	6	83,345,066 (GRCm39)	nonsense	probably null
R6564:Tet3	UTSW	6	83,363,052 (GRCm39)	missense	possibly damaging	0.92
R6622:Tet3	UTSW	6	83,380,426 (GRCm39)	missense	probably benign	0.00
R7089:Tet3	UTSW	6	83,432,006 (GRCm39)	missense	possibly damaging	0.46
R7244:Tet3	UTSW	6	83,347,603 (GRCm39)	missense	probably damaging	1.00
R7251:Tet3	UTSW	6	83,381,038 (GRCm39)	missense	probably benign
R7361:Tet3	UTSW	6	83,345,076 (GRCm39)	missense	probably benign	0.15
R7436:Tet3	UTSW	6	83,345,211 (GRCm39)	small insertion	probably benign
R7438:Tet3	UTSW	6	83,345,211 (GRCm39)	small insertion	probably benign
R7544:Tet3	UTSW	6	83,381,623 (GRCm39)	missense	probably damaging	1.00
R7552:Tet3	UTSW	6	83,345,289 (GRCm39)	missense	probably damaging	1.00
R7942:Tet3	UTSW	6	83,353,956 (GRCm39)	missense	probably damaging	1.00
R8010:Tet3	UTSW	6	83,380,228 (GRCm39)	missense	unknown
R8063:Tet3	UTSW	6	83,379,723 (GRCm39)	missense	probably damaging	1.00
R8307:Tet3	UTSW	6	83,356,909 (GRCm39)	missense	probably damaging	1.00
R9016:Tet3	UTSW	6	83,345,253 (GRCm39)	missense	probably damaging	1.00
R9020:Tet3	UTSW	6	83,381,418 (GRCm39)	missense	probably damaging	1.00
R9377:Tet3	UTSW	6	83,380,596 (GRCm39)	missense	possibly damaging	0.95
R9476:Tet3	UTSW	6	83,381,808 (GRCm39)	critical splice acceptor site	probably null
R9476:Tet3	UTSW	6	83,380,935 (GRCm39)	missense	possibly damaging	0.91
R9510:Tet3	UTSW	6	83,381,808 (GRCm39)	critical splice acceptor site	probably null
R9510:Tet3	UTSW	6	83,380,935 (GRCm39)	missense	possibly damaging	0.91
R9582:Tet3	UTSW	6	83,381,226 (GRCm39)	missense	probably damaging	0.99
R9671:Tet3	UTSW	6	83,381,136 (GRCm39)	missense	possibly damaging	0.89
R9801:Tet3	UTSW	6	83,346,436 (GRCm39)	missense	possibly damaging	0.94
X0004:Tet3	UTSW	6	83,380,405 (GRCm39)	missense	probably benign	0.17
Z1176:Tet3	UTSW	6	83,436,003 (GRCm39)	missense	unknown
Z1176:Tet3	UTSW	6	83,381,332 (GRCm39)	missense	probably damaging	1.00
Z1176:Tet3	UTSW	6	83,347,680 (GRCm39)	missense	probably damaging	1.00
Z1177:Tet3	UTSW	6	83,381,276 (GRCm39)	missense	possibly damaging	0.62

Predicted Primers

PCR Primer
(F):5'- AAACGGAACCTCTGGACAGG -3'
(R):5'- GTCCAAATGGTTAGGCAACAGG -3'

Sequencing Primer
(F):5'- GGACAGGTGCTTAGCATTCACATTC -3'
(R):5'- TGGTTAGGCAACAGGCTTGAC -3'

Posted On

2014-08-25