Mutagenetix > Incidental Mutation

Incidental Mutation 'R2015:Unc5d'

222820

Institutional Source

Beutler Lab

Gene Symbol

Unc5d

Ensembl Gene

ENSMUSG00000063626

Gene Name

unc-5 netrin receptor D

Synonyms

Unc5h4, D930029E11Rik

MMRRC Submission

040024-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.363) question?

Stock #

R2015 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

28646717-29219636 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 28758979 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 297 (T297A)

Ref Sequence

ENSEMBL: ENSMUSP00000147306 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000168630] [ENSMUST00000209401] [ENSMUST00000210298] [ENSMUST00000210785] [ENSMUST00000211448]

AlphaFold

Q8K1S2

Predicted Effect

probably damaging
Transcript: ENSMUST00000168630
AA Change: T353A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000128521
Gene: ENSMUSG00000063626
AA Change: T353A

Domain	Start	End	E-Value	Type
signal peptide	1	30	N/A	INTRINSIC
SCOP:d1cs6a2	52	146	5e-3	SMART
IGc2	169	236	2.66e-8	SMART
TSP1	253	304	2.29e-13	SMART
TSP1	309	358	6.33e-7	SMART
transmembrane domain	383	405	N/A	INTRINSIC
Pfam:ZU5	545	642	1.6e-33	PFAM
DEATH	850	941	4.77e-11	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000209401
AA Change: T297A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000210298
AA Change: T297A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000210785
AA Change: T353A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000211448
AA Change: T297A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.7%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice exhibit impaired induced growth cone collapse response and accelerated radial migration of cortical neurons. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	A	T	11: 110,131,846 (GRCm38)	M1022K	probably benign	Het
Abhd4	T	A	14: 54,262,832 (GRCm38)	H74Q	probably damaging	Het
Actg1	A	G	11: 120,346,810 (GRCm38)	S49P	possibly damaging	Het
Adcy8	C	T	15: 64,767,878 (GRCm38)	G678S	probably benign	Het
Aire	T	C	10: 78,042,958 (GRCm38)	D85G	probably damaging	Het
Akr1c18	T	A	13: 4,145,309 (GRCm38)	D50V	probably damaging	Het
Ankrd13a	C	A	5: 114,792,109 (GRCm38)	A185E	probably damaging	Het
Apc	A	G	18: 34,315,591 (GRCm38)	I1813V	probably damaging	Het
Armc8	A	T	9: 99,483,105 (GRCm38)	C661*	probably null	Het
Bbs10	C	T	10: 111,300,855 (GRCm38)	Q610*	probably null	Het
Blm	T	C	7: 80,502,399 (GRCm38)	E600G	probably damaging	Het
Bpifb9a	T	C	2: 154,268,200 (GRCm38)		probably null	Het
Cdk14	T	C	5: 5,380,082 (GRCm38)	K15R	probably benign	Het
Cdr1	A	G	X: 61,184,814 (GRCm38)	F249L	probably benign	Het
Cep250	A	C	2: 155,981,453 (GRCm38)	H1009P	probably damaging	Het
Cfap97d1	C	A	11: 101,987,218 (GRCm38)	H35Q	probably damaging	Het
Clasp2	A	G	9: 113,911,500 (GRCm38)	T495A	possibly damaging	Het
Col19a1	C	G	1: 24,559,753 (GRCm38)	G53A	unknown	Het
Cpne1	G	A	2: 156,078,388 (GRCm38)	R166C	probably damaging	Het
Dtx3l	G	A	16: 35,936,427 (GRCm38)	H129Y	probably benign	Het
Ercc3	A	G	18: 32,248,429 (GRCm38)	T433A	probably benign	Het
Gm9936	T	A	5: 114,857,421 (GRCm38)		probably benign	Het
Grina	T	C	15: 76,248,534 (GRCm38)	V167A	probably damaging	Het
Hcfc2	A	G	10: 82,738,980 (GRCm38)	N618D	probably benign	Het
Herpud1	T	C	8: 94,392,206 (GRCm38)	V196A	probably benign	Het
Hist3h2a	T	A	11: 58,954,928 (GRCm38)	L64Q	probably damaging	Het
Hlcs	A	G	16: 94,262,740 (GRCm38)	V487A	probably benign	Het
Hspa9	A	T	18: 34,946,648 (GRCm38)	Y243N	probably damaging	Het
Igll1	A	G	16: 16,863,775 (GRCm38)	S39P	probably benign	Het
Kdm5a	T	C	6: 120,431,990 (GRCm38)	S1545P	probably benign	Het
Klra8	C	A	6: 130,115,573 (GRCm38)	C255F	probably damaging	Het
Krtap4-6	A	T	11: 99,665,572 (GRCm38)	C110S	unknown	Het
Lef1	T	A	3: 131,111,587 (GRCm38)	I39N	probably damaging	Het
Lnpep	G	A	17: 17,579,063 (GRCm38)	T110I	probably damaging	Het
Lrp1	T	A	10: 127,540,694 (GRCm38)	T4282S	probably benign	Het
Lrp6	A	G	6: 134,480,374 (GRCm38)		probably null	Het
Ly6g5b	A	C	17: 35,114,678 (GRCm38)	S53A	possibly damaging	Het
M6pr	T	G	6: 122,313,373 (GRCm38)	N98K	probably damaging	Het
Mal2	T	C	15: 54,600,740 (GRCm38)	*176Q	probably null	Het
Mansc1	T	C	6: 134,610,311 (GRCm38)	D301G	possibly damaging	Het
Marchf1	C	A	8: 66,121,821 (GRCm38)	N11K	probably damaging	Het
Mast3	T	A	8: 70,787,363 (GRCm38)	I338F	probably benign	Het
Mcm3	A	G	1: 20,803,580 (GRCm38)	L772P	probably damaging	Het
Mib2	C	T	4: 155,657,880 (GRCm38)	G176D	probably damaging	Het
Mier2	A	T	10: 79,541,202 (GRCm38)		probably null	Het
Mogs	C	T	6: 83,117,650 (GRCm38)	R483*	probably null	Het
Msl2	G	T	9: 101,075,251 (GRCm38)		probably benign	Het
Naa16	A	T	14: 79,345,059 (GRCm38)	M530K	probably damaging	Het
Nde1	A	T	16: 14,169,457 (GRCm38)		probably benign	Het
Ndufb10	T	C	17: 24,722,529 (GRCm38)		probably null	Het
Nhsl1	A	T	10: 18,511,592 (GRCm38)	R205W	probably damaging	Het
Npffr2	T	A	5: 89,582,892 (GRCm38)	I227N	probably damaging	Het
Nup210l	T	A	3: 90,185,432 (GRCm38)	L1231Q	probably damaging	Het
Or2f1	A	G	6: 42,744,850 (GRCm38)	E271G	probably damaging	Het
Or7a39	T	C	10: 78,879,388 (GRCm38)	I72T	possibly damaging	Het
Pclo	C	A	5: 14,521,501 (GRCm38)	P300Q	probably damaging	Het
Pik3c2a	T	A	7: 116,350,931 (GRCm38)		probably null	Het
Plekha5	T	A	6: 140,534,564 (GRCm38)		probably null	Het
Pls1	A	G	9: 95,761,365 (GRCm38)	V527A	possibly damaging	Het
Ppfia2	T	C	10: 106,474,677 (GRCm38)	M15T	probably benign	Het
Prkd2	T	A	7: 16,847,677 (GRCm38)	C152*	probably null	Het
Ptprq	T	G	10: 107,667,422 (GRCm38)	K792Q	probably damaging	Het
Pttg1ip2	T	A	5: 5,455,964 (GRCm38)	I106L	probably benign	Het
Rbbp8	T	C	18: 11,720,624 (GRCm38)	M296T	probably benign	Het
Rfc3	T	C	5: 151,647,538 (GRCm38)		probably null	Het
Rnf17	A	G	14: 56,486,969 (GRCm38)	N1090S	probably benign	Het
Sash1	A	T	10: 8,729,413 (GRCm38)	V1071D	probably benign	Het
Sdsl	G	A	5: 120,463,153 (GRCm38)	T18M	probably damaging	Het
Sepsecs	T	A	5: 52,647,624 (GRCm38)	Q365L	probably benign	Het
Sgta	A	T	10: 81,051,296 (GRCm38)	V45E	probably damaging	Het
Slc25a46	A	T	18: 31,609,725 (GRCm38)	H29Q	probably benign	Het
Slc2a8	A	C	2: 32,981,380 (GRCm38)	V136G	probably benign	Het
Smg7	A	T	1: 152,860,508 (GRCm38)	N166K	probably damaging	Het
Spata21	C	T	4: 141,107,329 (GRCm38)	Q505*	probably null	Het
Strn4	T	C	7: 16,833,028 (GRCm38)	S458P	possibly damaging	Het
Tbc1d22a	C	T	15: 86,299,684 (GRCm38)	T248M	probably damaging	Het
Trabd	T	A	15: 89,084,726 (GRCm38)	M149K	possibly damaging	Het
Trpv3	A	T	11: 73,279,827 (GRCm38)	N178Y	probably damaging	Het
Try5	C	T	6: 41,314,651 (GRCm38)		probably null	Het
Tsg101	C	T	7: 46,908,904 (GRCm38)		probably null	Het
Ube3b	A	G	5: 114,411,149 (GRCm38)	E738G	probably damaging	Het
Unc13d	A	G	11: 116,068,755 (GRCm38)	S631P	probably damaging	Het
Usp18	A	T	6: 121,268,550 (GRCm38)	E1V	probably damaging	Het
Vapb	C	A	2: 173,771,598 (GRCm38)	P97T	probably benign	Het
Vmn1r33	T	A	6: 66,612,372 (GRCm38)	D66V	probably benign	Het
Vmn2r19	T	A	6: 123,315,995 (GRCm38)	M332K	probably benign	Het
Vmn2r71	T	A	7: 85,620,637 (GRCm38)	M452K	probably benign	Het
Vps13b	T	C	15: 35,607,142 (GRCm38)	S1074P	probably damaging	Het
Vwde	C	A	6: 13,208,338 (GRCm38)	G182C	possibly damaging	Het
Wdfy3	A	C	5: 101,860,486 (GRCm38)	S2778A	probably null	Het
Zbtb2	T	A	10: 4,369,757 (GRCm38)	I90F	possibly damaging	Het
Zfp518b	C	A	5: 38,672,002 (GRCm38)	V887F	probably benign	Het
Zfp790	A	G	7: 29,828,861 (GRCm38)	T324A	probably benign	Het
Zup1	A	G	10: 33,929,824 (GRCm38)	V437A	possibly damaging	Het

Other mutations in Unc5d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00093:Unc5d	APN	8	28,719,826 (GRCm38)	missense	probably damaging	0.97
IGL00687:Unc5d	APN	8	28,715,813 (GRCm38)	splice site	probably benign
IGL00970:Unc5d	APN	8	28,696,428 (GRCm38)	missense	probably benign	0.15
IGL01992:Unc5d	APN	8	28,652,791 (GRCm38)	missense	probably damaging	0.98
IGL02024:Unc5d	APN	8	28,652,827 (GRCm38)	missense	probably benign	0.08
IGL02080:Unc5d	APN	8	28,891,288 (GRCm38)	splice site	probably null
IGL02902:Unc5d	APN	8	28,875,606 (GRCm38)	missense	probably damaging	1.00
IGL02982:Unc5d	APN	8	28,652,853 (GRCm38)	missense	probably damaging	1.00
R0071:Unc5d	UTSW	8	28,719,826 (GRCm38)	missense	possibly damaging	0.62
R0071:Unc5d	UTSW	8	28,719,826 (GRCm38)	missense	possibly damaging	0.62
R0761:Unc5d	UTSW	8	28,696,532 (GRCm38)	splice site	probably null
R0941:Unc5d	UTSW	8	28,759,027 (GRCm38)	missense	possibly damaging	0.85
R1086:Unc5d	UTSW	8	28,875,630 (GRCm38)	missense	possibly damaging	0.87
R1625:Unc5d	UTSW	8	28,683,206 (GRCm38)	missense	probably damaging	1.00
R1635:Unc5d	UTSW	8	28,760,749 (GRCm38)	missense	probably benign	0.14
R1682:Unc5d	UTSW	8	28,759,081 (GRCm38)	missense	probably damaging	1.00
R1698:Unc5d	UTSW	8	28,696,478 (GRCm38)	missense	probably damaging	0.99
R2132:Unc5d	UTSW	8	28,875,529 (GRCm38)	missense	possibly damaging	0.50
R2174:Unc5d	UTSW	8	28,694,540 (GRCm38)	missense	probably damaging	0.99
R2210:Unc5d	UTSW	8	28,761,797 (GRCm38)	missense	probably damaging	0.97
R3684:Unc5d	UTSW	8	28,694,592 (GRCm38)	missense	probably damaging	1.00
R3734:Unc5d	UTSW	8	28,761,798 (GRCm38)	missense	probably benign	0.02
R4093:Unc5d	UTSW	8	28,844,837 (GRCm38)	missense	possibly damaging	0.87
R4287:Unc5d	UTSW	8	28,719,796 (GRCm38)	missense	probably benign	0.00
R4888:Unc5d	UTSW	8	28,666,899 (GRCm38)	missense	probably benign	0.02
R5000:Unc5d	UTSW	8	28,715,747 (GRCm38)	missense	possibly damaging	0.90
R5060:Unc5d	UTSW	8	28,719,695 (GRCm38)	missense	probably benign	0.00
R5076:Unc5d	UTSW	8	28,694,676 (GRCm38)	missense	possibly damaging	0.88
R5696:Unc5d	UTSW	8	28,666,842 (GRCm38)	missense	probably benign	0.06
R6024:Unc5d	UTSW	8	28,875,511 (GRCm38)	missense	possibly damaging	0.96
R6077:Unc5d	UTSW	8	28,675,307 (GRCm38)	missense	possibly damaging	0.94
R6259:Unc5d	UTSW	8	28,666,792 (GRCm38)	missense	probably benign	0.00
R6387:Unc5d	UTSW	8	28,875,526 (GRCm38)	nonsense	probably null
R7038:Unc5d	UTSW	8	28,715,721 (GRCm38)	critical splice donor site	probably null
R7577:Unc5d	UTSW	8	28,891,421 (GRCm38)	missense	probably damaging	1.00
R7641:Unc5d	UTSW	8	28,719,975 (GRCm38)	missense	probably damaging	1.00
R8175:Unc5d	UTSW	8	28,844,827 (GRCm38)	missense	probably damaging	1.00
R8426:Unc5d	UTSW	8	28,719,988 (GRCm38)	missense	probably damaging	1.00
R8465:Unc5d	UTSW	8	28,666,849 (GRCm38)	missense	probably damaging	1.00
R8748:Unc5d	UTSW	8	28,696,425 (GRCm38)	missense	probably benign	0.15
R9228:Unc5d	UTSW	8	28,675,420 (GRCm38)	missense	probably damaging	1.00
R9234:Unc5d	UTSW	8	28,760,849 (GRCm38)	missense	probably damaging	0.98
R9257:Unc5d	UTSW	8	28,725,146 (GRCm38)	critical splice donor site	probably null
R9338:Unc5d	UTSW	8	29,219,443 (GRCm38)	unclassified	probably benign
R9524:Unc5d	UTSW	8	28,875,611 (GRCm38)	missense	probably damaging	1.00
R9732:Unc5d	UTSW	8	28,891,291 (GRCm38)	critical splice donor site	probably null
R9738:Unc5d	UTSW	8	28,724,304 (GRCm38)	missense	probably benign	0.07
R9742:Unc5d	UTSW	8	28,666,764 (GRCm38)	critical splice donor site	probably null
R9743:Unc5d	UTSW	8	28,719,773 (GRCm38)	missense	possibly damaging	0.84
X0058:Unc5d	UTSW	8	28,760,730 (GRCm38)	missense	probably benign	0.12
X0060:Unc5d	UTSW	8	28,694,676 (GRCm38)	missense	possibly damaging	0.88
Z1176:Unc5d	UTSW	8	28,759,053 (GRCm38)	missense	probably damaging	1.00
Z1177:Unc5d	UTSW	8	28,891,308 (GRCm38)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- GAACTCAGATGCTTTGCAGC -3'
(R):5'- GGTGAGCCTTCCTATAGCTG -3'

Sequencing Primer
(F):5'- ATATATATGTGTGTGTGTGTGTGTG -3'
(R):5'- CCTATAGCTGCTGATTCTTGGTAATG -3'

Posted On

2014-08-25