Mutagenetix > Incidental Mutation

Incidental Mutation 'R2002:Ddx6'

223208

Institutional Source

Beutler Lab

Gene Symbol

Ddx6

Ensembl Gene

ENSMUSG00000032097

Gene Name

DEAD-box helicase 6

Synonyms

1110001P04Rik, HLR2, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, rck, C430015D01Rik, mRCK/P54, p54, E230023J21Rik

MMRRC Submission

040012-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2002 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

44516189-44552028 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 44518831 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 48 (T48A)

Ref Sequence

ENSEMBL: ENSMUSP00000149620 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000170489] [ENSMUST00000217034]

AlphaFold

P54823

Predicted Effect

probably benign
Transcript: ENSMUST00000170489
AA Change: T48A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000128421
Gene: ENSMUSG00000032097
AA Change: T48A

Domain	Start	End	E-Value	Type
low complexity region	30	41	N/A	INTRINSIC
Blast:DEXDc	42	88	7e-18	BLAST
DEXDc	115	312	3.67e-52	SMART
HELICc	348	429	1.59e-29	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000213697

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000214898

Predicted Effect

probably benign
Transcript: ENSMUST00000217034
AA Change: T48A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Meta Mutation Damage Score

0.0580

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.2%
20x: 91.6%

Validation Efficiency

97% (72/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the DEAD box protein family. The protein is an RNA helicase found in P-bodies and stress granules, and functions in translation suppression and mRNA degradation. It is required for microRNA-induced gene silencing. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Mar 2012]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930548G14Rik	T	C	15: 46,489,002 (GRCm39)		noncoding transcript	Het
Abcb4	T	A	5: 8,955,989 (GRCm39)	S98T	probably benign	Het
Acan	T	C	7: 78,750,541 (GRCm39)	S1771P	probably damaging	Het
Acvr1c	T	A	2: 58,205,987 (GRCm39)	Q41L	probably benign	Het
Ak2	T	A	4: 128,902,022 (GRCm39)	S232T	probably benign	Het
Akr1e1	T	A	13: 4,657,564 (GRCm39)		probably benign	Het
Ano7	T	C	1: 93,328,303 (GRCm39)		probably benign	Het
Aox1	T	A	1: 58,086,300 (GRCm39)	H68Q	possibly damaging	Het
Apaf1	A	G	10: 90,897,676 (GRCm39)	V269A	possibly damaging	Het
Apba2	A	T	7: 64,383,290 (GRCm39)	I368F	probably damaging	Het
Armc3	A	G	2: 19,293,747 (GRCm39)	M513V	probably benign	Het
Asb5	G	A	8: 55,036,655 (GRCm39)	V116M	probably damaging	Het
Atg16l2	A	G	7: 100,944,127 (GRCm39)	S280P	possibly damaging	Het
Atp6v0c	G	T	17: 24,383,835 (GRCm39)	T40K	probably damaging	Het
Cdk2ap2	A	G	19: 4,147,903 (GRCm39)	M57V	possibly damaging	Het
Cip2a	T	C	16: 48,826,214 (GRCm39)		probably benign	Het
Ctnnd1	T	C	2: 84,450,704 (GRCm39)	N172S	probably benign	Het
Ddx55	T	A	5: 124,704,503 (GRCm39)	V370E	probably damaging	Het
Dnah10	C	T	5: 124,911,052 (GRCm39)	R4490W	probably damaging	Het
Dspp	T	A	5: 104,326,425 (GRCm39)	S929R	unknown	Het
Erbb3	T	C	10: 128,422,094 (GRCm39)	Y50C	probably benign	Het
Fam209	C	A	2: 172,314,689 (GRCm39)	N59K	probably benign	Het
Fgd3	T	C	13: 49,449,931 (GRCm39)	E106G	probably benign	Het
Frmd4a	A	C	2: 4,577,176 (GRCm39)	K344T	probably damaging	Het
Gbe1	A	G	16: 70,325,814 (GRCm39)	E617G	probably damaging	Het
Gm5089	T	A	14: 122,673,686 (GRCm39)	I12F	unknown	Het
Gm7052	T	A	17: 22,258,920 (GRCm39)		probably benign	Het
Gria1	A	T	11: 56,902,930 (GRCm39)	N24I	possibly damaging	Het
Grin2b	T	C	6: 135,710,243 (GRCm39)	E1101G	probably damaging	Het
Hjurp	GT	GTT	1: 88,194,246 (GRCm39)		probably null	Het
Kcnma1	A	C	14: 23,387,097 (GRCm39)	S982A	probably damaging	Het
Khdrbs3	T	A	15: 68,885,328 (GRCm39)		probably benign	Het
Kif23	A	T	9: 61,834,666 (GRCm39)	C426*	probably null	Het
Lmo7	G	T	14: 102,124,497 (GRCm39)	A319S	probably benign	Het
Ly6c1	T	A	15: 74,920,342 (GRCm39)	T7S	possibly damaging	Het
Magel2	G	A	7: 62,028,844 (GRCm39)	V583I	unknown	Het
Mamdc4	A	T	2: 25,457,244 (GRCm39)	W548R	probably damaging	Het
Mfsd2a	C	T	4: 122,850,609 (GRCm39)	R88Q	probably damaging	Het
Mkrn1	T	C	6: 39,382,737 (GRCm39)	T158A	probably benign	Het
Mroh2b	G	T	15: 4,955,166 (GRCm39)	D720Y	probably damaging	Het
Mycbp2	A	G	14: 103,485,839 (GRCm39)	V1041A	probably damaging	Het
Ncam2	A	T	16: 81,386,586 (GRCm39)	H655L	possibly damaging	Het
Npas2	T	C	1: 39,377,276 (GRCm39)	V546A	probably benign	Het
Nrxn3	G	A	12: 90,299,089 (GRCm39)	A400T	probably damaging	Het
Oog3	G	T	4: 143,884,675 (GRCm39)	H420Q	possibly damaging	Het
Or3a10	A	T	11: 73,935,865 (GRCm39)	S78R	possibly damaging	Het
Or5ap2	T	A	2: 85,680,744 (GRCm39)	V316E	probably benign	Het
Or8k28	T	C	2: 86,285,817 (GRCm39)	H266R	probably benign	Het
Pak5	T	A	2: 135,958,557 (GRCm39)	H177L	probably benign	Het
Pcca	A	G	14: 123,124,477 (GRCm39)	I683V	probably benign	Het
Pea15a	T	C	1: 172,026,252 (GRCm39)	I90V	probably benign	Het
Plagl1	C	A	10: 13,004,402 (GRCm39)		probably benign	Het
Prmt1	A	G	7: 44,628,148 (GRCm39)	V237A	probably damaging	Het
Ptprz1	T	A	6: 23,027,833 (GRCm39)	Y910*	probably null	Het
Rasal3	T	A	17: 32,612,585 (GRCm39)	T757S	probably damaging	Het
Rbbp8	T	C	18: 11,860,223 (GRCm39)		probably benign	Het
S1pr1	A	G	3: 115,506,544 (GRCm39)	S17P	probably benign	Het
Scel	G	A	14: 103,779,421 (GRCm39)	V131M	probably damaging	Het
Scn2a	G	A	2: 65,512,427 (GRCm39)	R188Q	probably null	Het
Snap29	T	A	16: 17,224,190 (GRCm39)	Y68*	probably null	Het
Spdl1	T	C	11: 34,713,473 (GRCm39)	T199A	probably benign	Het
Srbd1	T	C	17: 86,449,828 (GRCm39)	N14D	probably benign	Het
Ston1	G	A	17: 88,942,957 (GRCm39)	G121D	probably benign	Het
Syt16	G	A	12: 74,281,977 (GRCm39)	G367E	possibly damaging	Het
Tdpoz1	T	C	3: 93,578,710 (GRCm39)	T25A	possibly damaging	Het
Tmem182	T	A	1: 40,845,355 (GRCm39)	Y77N	probably damaging	Het
Tmprss11f	A	T	5: 86,687,627 (GRCm39)		probably benign	Het
Trp73	T	C	4: 154,165,902 (GRCm39)	T56A	probably damaging	Het
Trpm3	A	G	19: 22,959,947 (GRCm39)	K1194R	probably damaging	Het
Ttc39c	T	A	18: 12,830,935 (GRCm39)		probably null	Het
Ube4b	T	C	4: 149,468,254 (GRCm39)	D174G	probably benign	Het
Vmn1r211	A	T	13: 23,035,953 (GRCm39)	M238K	probably damaging	Het
Wsb2	T	A	5: 117,508,798 (GRCm39)	N77K	probably benign	Het
Xkr4	C	T	1: 3,741,318 (GRCm39)	R85Q	probably benign	Het
Zmynd11	T	A	13: 9,739,514 (GRCm39)		probably null	Het

Other mutations in Ddx6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02561:Ddx6	APN	9	44,545,465 (GRCm39)	missense	probably damaging	0.96
IGL02880:Ddx6	APN	9	44,524,194 (GRCm39)	splice site	probably benign
R0278:Ddx6	UTSW	9	44,542,722 (GRCm39)	missense	probably damaging	1.00
R1330:Ddx6	UTSW	9	44,539,070 (GRCm39)	splice site	probably benign
R2001:Ddx6	UTSW	9	44,518,831 (GRCm39)	missense	probably benign
R2124:Ddx6	UTSW	9	44,535,816 (GRCm39)	nonsense	probably null
R2177:Ddx6	UTSW	9	44,539,028 (GRCm39)	missense	probably damaging	1.00
R2347:Ddx6	UTSW	9	44,518,888 (GRCm39)	missense	probably benign	0.00
R2863:Ddx6	UTSW	9	44,525,553 (GRCm39)	missense	probably damaging	1.00
R2865:Ddx6	UTSW	9	44,525,553 (GRCm39)	missense	probably damaging	1.00
R4584:Ddx6	UTSW	9	44,535,784 (GRCm39)	missense	probably damaging	1.00
R4915:Ddx6	UTSW	9	44,524,170 (GRCm39)	missense	probably damaging	1.00
R5476:Ddx6	UTSW	9	44,518,753 (GRCm39)	missense	possibly damaging	0.67
R6213:Ddx6	UTSW	9	44,539,990 (GRCm39)	missense	probably damaging	0.99
R6264:Ddx6	UTSW	9	44,540,049 (GRCm39)	missense	probably damaging	1.00
R6368:Ddx6	UTSW	9	44,547,073 (GRCm39)	missense	probably damaging	1.00
R6525:Ddx6	UTSW	9	44,534,926 (GRCm39)	missense	probably damaging	1.00
R6994:Ddx6	UTSW	9	44,540,020 (GRCm39)	missense	probably damaging	0.98
R7252:Ddx6	UTSW	9	44,535,050 (GRCm39)	splice site	probably null
R7463:Ddx6	UTSW	9	44,540,026 (GRCm39)	missense	probably damaging	1.00
R7706:Ddx6	UTSW	9	44,538,939 (GRCm39)	missense	probably damaging	1.00
R7752:Ddx6	UTSW	9	44,538,960 (GRCm39)	missense	probably damaging	1.00
R7784:Ddx6	UTSW	9	44,541,439 (GRCm39)	critical splice donor site	probably null
RF004:Ddx6	UTSW	9	44,535,789 (GRCm39)	missense	possibly damaging	0.76

Predicted Primers

PCR Primer
(F):5'- TTTGGAAGAGACACCTGTGCAG -3'
(R):5'- GGGTCGATTACAATGGCAGG -3'

Sequencing Primer
(F):5'- GAGACACCTGTGCAGCTAAC -3'
(R):5'- TGGCAGGTCACACACTACTTG -3'

Posted On

2014-08-25