Mutagenetix > Incidental Mutation

Incidental Mutation 'R2018:Nhsl3'

223375

Institutional Source

Beutler Lab

Gene Symbol

Nhsl3

Ensembl Gene

ENSMUSG00000050390

Gene Name

NHS like 3

Synonyms

C77080

MMRRC Submission

040027-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.120) question?

Stock #

R2018 (G1)

Quality Score

148

Status

Not validated

Chromosome

Chromosomal Location

129113371-129155194 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 129116148 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 884 (S884P)

Ref Sequence

ENSEMBL: ENSMUSP00000062395 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000052602] [ENSMUST00000097873] [ENSMUST00000106051] [ENSMUST00000106054] [ENSMUST00000145261] [ENSMUST00000146376]

AlphaFold

A2A7S8

Predicted Effect

probably damaging
Transcript: ENSMUST00000052602
AA Change: S884P

PolyPhen 2 Score 0.958 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000062395
Gene: ENSMUSG00000050390
AA Change: S884P

Domain	Start	End	E-Value	Type
low complexity region	2	30	N/A	INTRINSIC
low complexity region	39	80	N/A	INTRINSIC
low complexity region	209	215	N/A	INTRINSIC
low complexity region	273	286	N/A	INTRINSIC
low complexity region	365	382	N/A	INTRINSIC
low complexity region	393	418	N/A	INTRINSIC
low complexity region	449	464	N/A	INTRINSIC
low complexity region	492	499	N/A	INTRINSIC
low complexity region	532	550	N/A	INTRINSIC
low complexity region	555	588	N/A	INTRINSIC
low complexity region	621	634	N/A	INTRINSIC
low complexity region	657	690	N/A	INTRINSIC
low complexity region	724	739	N/A	INTRINSIC
low complexity region	743	773	N/A	INTRINSIC
low complexity region	810	833	N/A	INTRINSIC
low complexity region	916	930	N/A	INTRINSIC
low complexity region	988	1020	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000097873
AA Change: S839P

PolyPhen 2 Score 0.823 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000095483
Gene: ENSMUSG00000050390
AA Change: S839P

Domain	Start	End	E-Value	Type
low complexity region	164	170	N/A	INTRINSIC
low complexity region	228	241	N/A	INTRINSIC
low complexity region	320	337	N/A	INTRINSIC
low complexity region	348	373	N/A	INTRINSIC
low complexity region	404	419	N/A	INTRINSIC
low complexity region	447	454	N/A	INTRINSIC
low complexity region	487	505	N/A	INTRINSIC
low complexity region	510	543	N/A	INTRINSIC
low complexity region	576	589	N/A	INTRINSIC
low complexity region	612	645	N/A	INTRINSIC
low complexity region	679	694	N/A	INTRINSIC
low complexity region	698	728	N/A	INTRINSIC
low complexity region	765	788	N/A	INTRINSIC
low complexity region	871	885	N/A	INTRINSIC
low complexity region	943	975	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000106051
AA Change: S827P

PolyPhen 2 Score 0.827 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000101666
Gene: ENSMUSG00000050390
AA Change: S827P

Domain	Start	End	E-Value	Type
low complexity region	152	158	N/A	INTRINSIC
low complexity region	216	229	N/A	INTRINSIC
low complexity region	308	325	N/A	INTRINSIC
low complexity region	336	361	N/A	INTRINSIC
low complexity region	392	407	N/A	INTRINSIC
low complexity region	435	442	N/A	INTRINSIC
low complexity region	475	493	N/A	INTRINSIC
low complexity region	498	531	N/A	INTRINSIC
low complexity region	564	577	N/A	INTRINSIC
low complexity region	600	633	N/A	INTRINSIC
low complexity region	667	682	N/A	INTRINSIC
low complexity region	686	716	N/A	INTRINSIC
low complexity region	753	776	N/A	INTRINSIC
low complexity region	859	873	N/A	INTRINSIC
low complexity region	931	963	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106054

SMART Domains

Protein: ENSMUSP00000101669
Gene: ENSMUSG00000028811

Domain	Start	End	E-Value	Type
low complexity region	5	26	N/A	INTRINSIC
Pfam:tRNA-synt_1b	67	358	1e-78	PFAM
Pfam:tRNA_bind	406	502	7.1e-36	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137591

Predicted Effect

probably benign
Transcript: ENSMUST00000145261

Predicted Effect

probably benign
Transcript: ENSMUST00000146376

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 93.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 111 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610028H24Rik	C	A	10: 76,293,899 (GRCm39)	F252L	possibly damaging	Het
4930447A16Rik	T	G	15: 37,440,742 (GRCm39)		probably benign	Het
Abca14	A	T	7: 119,815,408 (GRCm39)	M219L	probably benign	Het
Abi3bp	A	G	16: 56,498,159 (GRCm39)	T918A	probably damaging	Het
Acss3	C	T	10: 106,772,068 (GRCm39)	S669N	probably benign	Het
Adamts16	G	A	13: 70,927,637 (GRCm39)		probably benign	Het
Adamtsl4	A	G	3: 95,588,412 (GRCm39)	Y559H	probably damaging	Het
Adgrg5	T	A	8: 95,661,108 (GRCm39)	M106K	probably damaging	Het
Akt1	T	C	12: 112,626,059 (GRCm39)	N71S	probably damaging	Het
Amer2	A	C	14: 60,615,894 (GRCm39)	K30Q	probably damaging	Het
Anapc5	T	C	5: 122,938,587 (GRCm39)	K383E	probably damaging	Het
Ano1	A	G	7: 144,207,987 (GRCm39)	L258P	probably damaging	Het
Arb2a	A	G	13: 78,147,756 (GRCm39)	T321A	possibly damaging	Het
Arhgef10l	A	G	4: 140,271,695 (GRCm39)	S560P	probably damaging	Het
Arhgef40	T	A	14: 52,241,162 (GRCm39)	L1395Q	probably damaging	Het
Arid1a	A	T	4: 133,409,145 (GRCm39)	D1787E	unknown	Het
Ces2h	T	C	8: 105,745,030 (GRCm39)	L388P	probably damaging	Het
Cfap54	T	A	10: 92,852,466 (GRCm39)	N880I	probably benign	Het
Cryz	T	C	3: 154,327,320 (GRCm39)	V116A	probably damaging	Het
Csrp1	G	A	1: 135,678,366 (GRCm39)	A159T	probably damaging	Het
Cttnbp2	A	G	6: 18,434,517 (GRCm39)	F447S	probably damaging	Het
Cyp4a12a	A	T	4: 115,184,702 (GRCm39)	I328F	probably damaging	Het
Cyth4	T	G	15: 78,492,371 (GRCm39)	H133Q	probably damaging	Het
Ddah2	A	G	17: 35,279,402 (GRCm39)	I88V	possibly damaging	Het
Dmbt1	T	G	7: 130,712,718 (GRCm39)	I1563S	possibly damaging	Het
Dnajc22	T	C	15: 98,999,114 (GRCm39)	S100P	probably benign	Het
Fancl	T	A	11: 26,372,459 (GRCm39)	D123E	probably damaging	Het
Fbxo30	A	G	10: 11,166,772 (GRCm39)	Q498R	probably damaging	Het
Fgd4	T	C	16: 16,253,824 (GRCm39)	H581R	probably benign	Het
Gm2663	T	C	6: 40,974,900 (GRCm39)	Q57R	probably benign	Het
Gm7247	A	T	14: 51,602,804 (GRCm39)	M47L	possibly damaging	Het
Gsdmc2	T	A	15: 63,699,975 (GRCm39)		probably null	Het
Hc	A	C	2: 34,903,540 (GRCm39)	F1038C	probably damaging	Het
Heatr1	C	A	13: 12,429,359 (GRCm39)	Q890K	possibly damaging	Het
Hipk4	C	A	7: 27,228,429 (GRCm39)	T293K	probably damaging	Het
Hp1bp3	C	A	4: 137,948,943 (GRCm39)	A2E	probably damaging	Het
Il6	T	C	5: 30,219,945 (GRCm39)		probably null	Het
Itga6	A	G	2: 71,648,828 (GRCm39)	D104G	probably benign	Het
Krt24	A	G	11: 99,173,277 (GRCm39)	S293P	probably damaging	Het
Krt4	C	T	15: 101,829,086 (GRCm39)	R309Q	probably damaging	Het
Krt40	A	T	11: 99,430,913 (GRCm39)	W199R	probably damaging	Het
Lamc1	T	C	1: 153,118,378 (GRCm39)	E931G	probably benign	Het
Lamp3	A	T	16: 19,519,961 (GRCm39)	M74K	probably benign	Het
Lgalsl2	A	G	7: 5,362,573 (GRCm39)	D68G	probably benign	Het
Magel2	G	A	7: 62,028,844 (GRCm39)	V583I	unknown	Het
Marchf7	T	A	2: 60,059,384 (GRCm39)	Y37*	probably null	Het
Mrpl36	A	G	13: 73,479,687 (GRCm39)	K66E	probably damaging	Het
Mrps35	G	T	6: 146,962,982 (GRCm39)	E229*	probably null	Het
Mtmr6	T	C	14: 60,536,441 (GRCm39)	M557T	probably benign	Het
Myocd	A	T	11: 65,077,854 (GRCm39)	I647N	probably damaging	Het
Myom2	A	C	8: 15,181,151 (GRCm39)	L1350F	probably damaging	Het
Nosip	T	A	7: 44,726,033 (GRCm39)	S197T	probably benign	Het
Npat	A	G	9: 53,473,791 (GRCm39)	K528E	probably benign	Het
Nyap2	A	G	1: 81,169,587 (GRCm39)	T115A	probably benign	Het
Obi1	T	A	14: 104,759,978 (GRCm39)	K24M	probably damaging	Het
Or10al6	A	G	17: 38,083,467 (GRCm39)	R317G	probably benign	Het
Or4a72	A	G	2: 89,405,737 (GRCm39)	V111A	probably damaging	Het
Or4c109	G	T	2: 88,818,489 (GRCm39)	P19Q	probably benign	Het
Or51b6	T	A	7: 103,556,249 (GRCm39)	V201D	possibly damaging	Het
Or5m3	A	T	2: 85,838,567 (GRCm39)	Y149F	probably damaging	Het
Or8g55	A	G	9: 39,785,354 (GRCm39)	Q261R	probably benign	Het
Orc1	T	C	4: 108,447,897 (GRCm39)	V48A	possibly damaging	Het
Pde6d	T	C	1: 86,474,438 (GRCm39)	E69G	probably damaging	Het
Pdgfrb	A	T	18: 61,216,406 (GRCm39)	D1088V	possibly damaging	Het
Peg12	A	G	7: 62,113,386 (GRCm39)	V237A	probably benign	Het
Phf8-ps	T	C	17: 33,285,941 (GRCm39)	N287S	probably benign	Het
Piezo1	A	G	8: 123,209,451 (GRCm39)	F2371L	probably benign	Het
Podn	T	A	4: 107,880,570 (GRCm39)	S27C	probably damaging	Het
Pom121l2	A	G	13: 22,166,904 (GRCm39)	M392V	possibly damaging	Het
Ppm1b	A	G	17: 85,301,630 (GRCm39)	K170R	probably damaging	Het
Rab18	A	T	18: 6,770,113 (GRCm39)		probably null	Het
Raet1d	G	A	10: 22,246,911 (GRCm39)	A80T	probably damaging	Het
Rfx7	T	A	9: 72,524,967 (GRCm39)	V719E	probably benign	Het
Ror1	C	T	4: 100,265,038 (GRCm39)	Q171*	probably null	Het
Rufy4	G	A	1: 74,180,106 (GRCm39)	V454M	possibly damaging	Het
Ryr2	C	T	13: 11,866,074 (GRCm39)	G292D	possibly damaging	Het
Ryr3	G	T	2: 112,611,410 (GRCm39)	N2257K	probably benign	Het
Saal1	A	G	7: 46,348,913 (GRCm39)	F306S	possibly damaging	Het
Sap18	A	G	14: 58,036,021 (GRCm39)	N69S	probably damaging	Het
Sar1b	A	T	11: 51,670,514 (GRCm39)		probably null	Het
Serpina3n	G	T	12: 104,375,473 (GRCm39)	V182L	probably damaging	Het
Setd3	A	T	12: 108,084,513 (GRCm39)	H279Q	probably damaging	Het
Slc18a2	C	A	19: 59,264,937 (GRCm39)	A307E	possibly damaging	Het
Slc4a10	A	T	2: 62,064,725 (GRCm39)	D193V	probably damaging	Het
Spire2	T	C	8: 124,059,657 (GRCm39)	C52R	probably damaging	Het
Syne2	A	T	12: 76,121,353 (GRCm39)	I5940F	probably damaging	Het
Sytl1	C	T	4: 132,983,471 (GRCm39)	S355N	probably damaging	Het
Tarbp1	C	T	8: 127,154,853 (GRCm39)	V1424I	probably damaging	Het
Tatdn3	A	T	1: 190,781,477 (GRCm39)		probably null	Het
Tbpl1	T	A	10: 22,583,576 (GRCm39)	E131D	probably damaging	Het
Telo2	A	T	17: 25,324,382 (GRCm39)	M501K	probably damaging	Het
Terb1	A	G	8: 105,179,331 (GRCm39)	V619A	probably benign	Het
Tmem132e	A	G	11: 82,335,989 (GRCm39)	T1024A	probably benign	Het
Tmem30a	T	C	9: 79,681,500 (GRCm39)	D223G	probably damaging	Het
Tmprss11d	A	G	5: 86,487,413 (GRCm39)	V19A	probably damaging	Het
Tnks	A	T	8: 35,318,260 (GRCm39)	S872T	probably damaging	Het
Tnxb	A	G	17: 34,890,724 (GRCm39)	S356G	probably benign	Het
Tob2	T	C	15: 81,735,400 (GRCm39)	K190E	probably damaging	Het
Togaram1	T	C	12: 65,049,433 (GRCm39)	V1240A	possibly damaging	Het
Trim13	T	A	14: 61,842,335 (GRCm39)	C117*	probably null	Het
Trpv4	G	A	5: 114,772,666 (GRCm39)	R308C	probably damaging	Het
Ttn	C	G	2: 76,585,676 (GRCm39)	D21987H	probably damaging	Het
Ttn	C	A	2: 76,656,418 (GRCm39)		probably null	Het
Upp1	A	T	11: 9,083,240 (GRCm39)	M111L	possibly damaging	Het
Vmn1r206	A	T	13: 22,804,358 (GRCm39)	V283E	probably damaging	Het
Vmn2r79	G	T	7: 86,651,634 (GRCm39)	L344F	probably benign	Het
Vmn2r93	T	G	17: 18,546,324 (GRCm39)	I732S	probably damaging	Het
Vmn2r96	G	T	17: 18,804,263 (GRCm39)	M504I	probably benign	Het
Vps39	T	C	2: 120,173,708 (GRCm39)	Y147C	probably damaging	Het
Zbtb20	T	A	16: 43,398,015 (GRCm39)	C35S	possibly damaging	Het
Zfp871	A	T	17: 32,993,751 (GRCm39)	C475S	probably damaging	Het

Other mutations in Nhsl3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01530:Nhsl3	APN	4	129,116,589 (GRCm39)	splice site	probably null
IGL02654:Nhsl3	APN	4	129,116,112 (GRCm39)	missense	probably damaging	1.00
IGL02797:Nhsl3	APN	4	129,117,104 (GRCm39)	missense	probably damaging	0.99
IGL03231:Nhsl3	APN	4	129,117,474 (GRCm39)	missense	possibly damaging	0.73
IGL03134:Nhsl3	UTSW	4	129,116,280 (GRCm39)	missense	possibly damaging	0.53
R0078:Nhsl3	UTSW	4	129,121,516 (GRCm39)	splice site	probably null
R0418:Nhsl3	UTSW	4	129,117,477 (GRCm39)	missense	probably damaging	1.00
R1374:Nhsl3	UTSW	4	129,116,082 (GRCm39)	missense	possibly damaging	0.83
R1632:Nhsl3	UTSW	4	129,116,459 (GRCm39)	missense	possibly damaging	0.94
R1735:Nhsl3	UTSW	4	129,117,370 (GRCm39)	missense	probably damaging	1.00
R1970:Nhsl3	UTSW	4	129,119,810 (GRCm39)	splice site	probably benign
R2157:Nhsl3	UTSW	4	129,117,917 (GRCm39)	missense	possibly damaging	0.76
R2201:Nhsl3	UTSW	4	129,116,432 (GRCm39)	missense	probably benign
R2316:Nhsl3	UTSW	4	129,117,540 (GRCm39)	missense	probably damaging	1.00
R3751:Nhsl3	UTSW	4	129,118,115 (GRCm39)	unclassified	probably benign
R4648:Nhsl3	UTSW	4	129,115,733 (GRCm39)	missense	probably benign	0.00
R4790:Nhsl3	UTSW	4	129,117,095 (GRCm39)	missense	probably damaging	1.00
R4885:Nhsl3	UTSW	4	129,118,238 (GRCm39)	missense	probably damaging	1.00
R5217:Nhsl3	UTSW	4	129,116,478 (GRCm39)	missense	probably damaging	0.99
R5270:Nhsl3	UTSW	4	129,118,005 (GRCm39)	missense	possibly damaging	0.48
R5272:Nhsl3	UTSW	4	129,118,005 (GRCm39)	missense	possibly damaging	0.48
R5273:Nhsl3	UTSW	4	129,118,005 (GRCm39)	missense	possibly damaging	0.48
R5314:Nhsl3	UTSW	4	129,118,005 (GRCm39)	missense	possibly damaging	0.48
R5548:Nhsl3	UTSW	4	129,117,773 (GRCm39)	frame shift	probably null
R5752:Nhsl3	UTSW	4	129,117,773 (GRCm39)	frame shift	probably null
R5908:Nhsl3	UTSW	4	129,115,941 (GRCm39)	missense	probably damaging	0.98
R5960:Nhsl3	UTSW	4	129,115,865 (GRCm39)	missense	probably damaging	0.99
R7024:Nhsl3	UTSW	4	129,119,201 (GRCm39)	missense	probably null	0.73
R7296:Nhsl3	UTSW	4	129,119,211 (GRCm39)	missense	probably damaging	1.00
R7447:Nhsl3	UTSW	4	129,115,835 (GRCm39)	missense	possibly damaging	0.63
R7638:Nhsl3	UTSW	4	129,115,734 (GRCm39)	missense	probably benign
R7689:Nhsl3	UTSW	4	129,117,566 (GRCm39)	missense	probably benign	0.25
R7819:Nhsl3	UTSW	4	129,116,276 (GRCm39)	missense	probably benign	0.31
R8213:Nhsl3	UTSW	4	129,115,252 (GRCm39)	missense	possibly damaging	0.64
R8219:Nhsl3	UTSW	4	129,141,946 (GRCm39)	missense	possibly damaging	0.55
R8348:Nhsl3	UTSW	4	129,117,699 (GRCm39)	missense	probably damaging	1.00
R8360:Nhsl3	UTSW	4	129,117,995 (GRCm39)	missense	possibly damaging	0.89
R8788:Nhsl3	UTSW	4	129,119,743 (GRCm39)	missense	probably benign
R9252:Nhsl3	UTSW	4	129,117,269 (GRCm39)	missense	probably benign	0.01
R9652:Nhsl3	UTSW	4	129,117,962 (GRCm39)	missense	possibly damaging	0.90
Z1088:Nhsl3	UTSW	4	129,116,091 (GRCm39)	missense	probably damaging	1.00
Z1176:Nhsl3	UTSW	4	129,117,497 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGCCCTTGGAGAAGATGAAG -3'
(R):5'- CCACCTCCTAGTTCTGGATCAG -3'

Sequencing Primer
(F):5'- ATGAAGCTGGCCTTGGAGG -3'
(R):5'- TCTGGATCAGAACCTCTGGC -3'

Posted On

2014-08-25