Mutagenetix > Incidental Mutation

Incidental Mutation 'R0143:Dennd4b'

22425

Institutional Source

Beutler Lab

Gene Symbol

Dennd4b

Ensembl Gene

ENSMUSG00000042404

Gene Name

DENN domain containing 4B

Synonyms

MMRRC Submission

038428-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.200) question?

Stock #

R0143 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

90172492-90187976 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 90179671 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 643 (H643L)

Ref Sequence

ENSEMBL: ENSMUSP00000117354 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098914] [ENSMUST00000129564]

AlphaFold

Q3U1Y4

Predicted Effect

probably damaging
Transcript: ENSMUST00000098914
AA Change: H654L

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000096514
Gene: ENSMUSG00000042404
AA Change: H654L

Domain	Start	End	E-Value	Type
low complexity region	8	15	N/A	INTRINSIC
low complexity region	43	57	N/A	INTRINSIC
uDENN	183	290	1.15e-29	SMART
DENN	324	508	5.26e-70	SMART
dDENN	573	647	1.75e-25	SMART
low complexity region	672	690	N/A	INTRINSIC
low complexity region	740	752	N/A	INTRINSIC
coiled coil region	902	928	N/A	INTRINSIC
low complexity region	1022	1038	N/A	INTRINSIC
low complexity region	1086	1096	N/A	INTRINSIC
low complexity region	1114	1127	N/A	INTRINSIC
low complexity region	1131	1148	N/A	INTRINSIC
low complexity region	1338	1350	N/A	INTRINSIC
low complexity region	1424	1439	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000129564
AA Change: H643L

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000117354
Gene: ENSMUSG00000042404
AA Change: H643L

Domain	Start	End	E-Value	Type
low complexity region	32	46	N/A	INTRINSIC
uDENN	172	279	1.15e-29	SMART
DENN	313	497	5.26e-70	SMART
dDENN	562	636	1.75e-25	SMART
low complexity region	661	679	N/A	INTRINSIC
low complexity region	729	741	N/A	INTRINSIC
coiled coil region	891	917	N/A	INTRINSIC
low complexity region	1011	1027	N/A	INTRINSIC
low complexity region	1075	1085	N/A	INTRINSIC
low complexity region	1103	1116	N/A	INTRINSIC
low complexity region	1120	1137	N/A	INTRINSIC
low complexity region	1327	1339	N/A	INTRINSIC
low complexity region	1413	1428	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000138376

SMART Domains

Protein: ENSMUSP00000116003
Gene: ENSMUSG00000042404

Domain	Start	End	E-Value	Type
coiled coil region	29	55	N/A	INTRINSIC
low complexity region	148	164	N/A	INTRINSIC
low complexity region	212	222	N/A	INTRINSIC
low complexity region	240	253	N/A	INTRINSIC
low complexity region	257	264	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000151648

SMART Domains

Protein: ENSMUSP00000121350
Gene: ENSMUSG00000042404

Domain	Start	End	E-Value	Type
uDENN	2	57	3.71e-6	SMART
Pfam:DENN	91	157	2.9e-13	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000156358

SMART Domains

Protein: ENSMUSP00000118483
Gene: ENSMUSG00000042404

Domain	Start	End	E-Value	Type
low complexity region	24	38	N/A	INTRINSIC
Blast:uDENN	39	97	9e-6	BLAST
Blast:uDENN	164	207	1e-22	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183900

Meta Mutation Damage Score

0.2718

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.6%
20x: 93.6%

Validation Efficiency

97% (76/78)

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim3	A	T	18: 61,988,288 (GRCm39)	I145N	probably benign	Het
Ankrd1	G	A	19: 36,096,713 (GRCm39)	A38V	probably benign	Het
Ankrd34b	A	G	13: 92,576,268 (GRCm39)	E500G	probably damaging	Het
Arhgef12	T	C	9: 42,916,890 (GRCm39)	T419A	probably damaging	Het
B3galt2	A	T	1: 143,523,072 (GRCm39)	N403Y	possibly damaging	Het
Bbx	C	T	16: 50,100,755 (GRCm39)	E47K	probably benign	Het
C4b	G	A	17: 34,953,193 (GRCm39)		probably benign	Het
Cacna1e	A	T	1: 154,324,693 (GRCm39)		probably null	Het
Cdh3	T	C	8: 107,237,857 (GRCm39)	V17A	probably benign	Het
Cog7	A	T	7: 121,550,387 (GRCm39)	L379Q	probably damaging	Het
Cul9	T	C	17: 46,837,336 (GRCm39)	N1044S	possibly damaging	Het
Cyp4b1	C	T	4: 115,493,071 (GRCm39)	D258N	probably damaging	Het
Ddx39a	T	C	8: 84,447,179 (GRCm39)	V113A	probably benign	Het
Dpy19l3	T	C	7: 35,413,640 (GRCm39)	T334A	probably benign	Het
Dsg3	T	C	18: 20,669,882 (GRCm39)	L632S	probably damaging	Het
Dtx4	G	A	19: 12,463,846 (GRCm39)	T312I	probably damaging	Het
Dusp18	C	T	11: 3,847,243 (GRCm39)	R78C	probably benign	Het
Fes	A	C	7: 80,033,643 (GRCm39)	F203V	probably benign	Het
Fhad1	C	A	4: 141,656,957 (GRCm39)		probably benign	Het
Gjb2	T	C	14: 57,337,526 (GRCm39)		silent	Het
Gm5828	T	C	1: 16,838,579 (GRCm39)		noncoding transcript	Het
Gsdma	A	C	11: 98,557,080 (GRCm39)	E65A	probably damaging	Het
Hck	T	A	2: 152,976,140 (GRCm39)		probably null	Het
Henmt1	A	T	3: 108,861,118 (GRCm39)	H47L	probably damaging	Het
Hivep2	T	C	10: 14,005,099 (GRCm39)	F566L	probably damaging	Het
Hnrnpl	T	C	7: 28,513,617 (GRCm39)		probably benign	Het
Igsf3	T	C	3: 101,342,917 (GRCm39)	I518T	probably damaging	Het
Ireb2	T	C	9: 54,793,193 (GRCm39)	F223L	probably benign	Het
Isoc2a	T	C	7: 4,894,331 (GRCm39)		probably null	Het
Krt73	T	A	15: 101,709,208 (GRCm39)	R200W	probably damaging	Het
Lgals9	T	A	11: 78,854,361 (GRCm39)	I308F	probably damaging	Het
Lrp1	A	G	10: 127,429,811 (GRCm39)	F420L	probably damaging	Het
Mep1b	T	C	18: 21,228,164 (GRCm39)		probably benign	Het
Mex3a	G	T	3: 88,443,562 (GRCm39)	A213S	probably benign	Het
Mmp13	T	C	9: 7,276,558 (GRCm39)	F218L	probably damaging	Het
Ncf1	G	T	5: 134,255,991 (GRCm39)		probably benign	Het
Notch2	A	G	3: 98,053,433 (GRCm39)	D2032G	probably damaging	Het
Or10h28	T	C	17: 33,488,471 (GRCm39)	S258P	probably damaging	Het
Or5p1	A	G	7: 107,916,202 (GRCm39)	I34V	probably benign	Het
Or9i1b	A	C	19: 13,896,614 (GRCm39)	I77L	probably damaging	Het
Pex16	G	A	2: 92,210,802 (GRCm39)	G312D	probably damaging	Het
Pex5	A	T	6: 124,375,448 (GRCm39)	W525R	probably damaging	Het
Plcb4	T	A	2: 135,818,131 (GRCm39)	I799N	probably damaging	Het
Poldip3	G	A	15: 83,012,144 (GRCm39)	L372F	probably damaging	Het
Polg2	C	A	11: 106,668,352 (GRCm39)	V174L	probably benign	Het
Prrt4	C	G	6: 29,170,670 (GRCm39)	G594A	probably damaging	Het
Prss1	A	G	6: 41,440,522 (GRCm39)	D199G	probably damaging	Het
Rbms2	T	A	10: 127,973,823 (GRCm39)	Q207L	probably benign	Het
Retreg2	A	G	1: 75,123,074 (GRCm39)	D334G	possibly damaging	Het
Slc6a15	T	G	10: 103,253,929 (GRCm39)	C622G	probably benign	Het
Spdya	T	A	17: 71,865,635 (GRCm39)	D84E	probably damaging	Het
Stat3	A	T	11: 100,785,982 (GRCm39)	S432T	possibly damaging	Het
Tiam1	A	T	16: 89,695,088 (GRCm39)	V123E	probably benign	Het
Tnpo3	A	G	6: 29,565,651 (GRCm39)		probably benign	Het
Tnrc6c	A	C	11: 117,643,811 (GRCm39)	N1481H	probably damaging	Het
Top3b	T	C	16: 16,701,389 (GRCm39)	S234P	probably damaging	Het
Tor1aip2	A	T	1: 155,935,294 (GRCm39)	T10S	probably benign	Het
Tpsab1	T	A	17: 25,562,418 (GRCm39)	H303L	probably benign	Het
Traf3	T	A	12: 111,228,010 (GRCm39)	V407D	probably damaging	Het
Trim33	T	A	3: 103,259,417 (GRCm39)	D1035E	probably benign	Het
Ttc38	T	C	15: 85,737,920 (GRCm39)	V402A	possibly damaging	Het
Ube4b	C	T	4: 149,439,914 (GRCm39)	R646H	possibly damaging	Het
Usp8	C	A	2: 126,597,009 (GRCm39)		probably benign	Het
Zdbf2	A	T	1: 63,347,233 (GRCm39)	I1871F	probably benign	Het
Zfp345	T	A	2: 150,314,475 (GRCm39)	Q354L	probably benign	Het
Zfp462	C	A	4: 55,023,402 (GRCm39)		probably benign	Het
Zfp81	G	A	17: 33,554,095 (GRCm39)	H240Y	possibly damaging	Het
Zfp830	A	G	11: 82,655,994 (GRCm39)	D266G	possibly damaging	Het

Other mutations in Dennd4b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00321:Dennd4b	APN	3	90,178,514 (GRCm39)	missense	possibly damaging	0.83
IGL00834:Dennd4b	APN	3	90,186,993 (GRCm39)	critical splice donor site	probably null
IGL01124:Dennd4b	APN	3	90,176,381 (GRCm39)	missense	possibly damaging	0.61
IGL01792:Dennd4b	APN	3	90,187,152 (GRCm39)	missense	probably damaging	0.96
IGL01895:Dennd4b	APN	3	90,182,874 (GRCm39)	missense	probably benign	0.00
IGL02533:Dennd4b	APN	3	90,179,617 (GRCm39)	missense	probably benign	0.02
IGL02630:Dennd4b	APN	3	90,180,284 (GRCm39)	missense	probably benign	0.00
R0107:Dennd4b	UTSW	3	90,180,043 (GRCm39)	missense	possibly damaging	0.92
R1079:Dennd4b	UTSW	3	90,178,485 (GRCm39)	missense	probably benign
R1306:Dennd4b	UTSW	3	90,178,472 (GRCm39)	missense	probably benign	0.00
R1525:Dennd4b	UTSW	3	90,178,177 (GRCm39)	missense	probably damaging	0.97
R1756:Dennd4b	UTSW	3	90,178,912 (GRCm39)	missense	probably damaging	1.00
R1959:Dennd4b	UTSW	3	90,176,080 (GRCm39)	missense	probably damaging	1.00
R1976:Dennd4b	UTSW	3	90,180,362 (GRCm39)	missense	probably damaging	1.00
R2184:Dennd4b	UTSW	3	90,182,847 (GRCm39)	missense	probably damaging	1.00
R2296:Dennd4b	UTSW	3	90,182,821 (GRCm39)	missense	probably damaging	1.00
R2406:Dennd4b	UTSW	3	90,182,795 (GRCm39)	missense	probably damaging	1.00
R2408:Dennd4b	UTSW	3	90,178,882 (GRCm39)	nonsense	probably null
R4691:Dennd4b	UTSW	3	90,179,619 (GRCm39)	missense	probably damaging	1.00
R5376:Dennd4b	UTSW	3	90,185,363 (GRCm39)	missense	probably benign	0.00
R5466:Dennd4b	UTSW	3	90,175,807 (GRCm39)	splice site	probably null
R5555:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5556:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5557:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5605:Dennd4b	UTSW	3	90,175,675 (GRCm39)	missense	probably damaging	1.00
R5617:Dennd4b	UTSW	3	90,182,933 (GRCm39)	missense	probably benign
R5692:Dennd4b	UTSW	3	90,185,090 (GRCm39)	missense	probably damaging	1.00
R5790:Dennd4b	UTSW	3	90,184,757 (GRCm39)	missense	probably damaging	1.00
R5957:Dennd4b	UTSW	3	90,178,272 (GRCm39)	missense	probably damaging	1.00
R6130:Dennd4b	UTSW	3	90,183,566 (GRCm39)	missense	probably damaging	1.00
R6183:Dennd4b	UTSW	3	90,182,875 (GRCm39)	utr 3 prime	probably benign
R6505:Dennd4b	UTSW	3	90,174,918 (GRCm39)	missense	probably damaging	1.00
R6631:Dennd4b	UTSW	3	90,185,039 (GRCm39)	splice site	probably null
R6801:Dennd4b	UTSW	3	90,176,086 (GRCm39)	missense	probably damaging	0.98
R7409:Dennd4b	UTSW	3	90,181,259 (GRCm39)	missense	probably benign	0.15
R7457:Dennd4b	UTSW	3	90,176,622 (GRCm39)	missense	probably benign
R7650:Dennd4b	UTSW	3	90,176,056 (GRCm39)	nonsense	probably null
R8196:Dennd4b	UTSW	3	90,178,904 (GRCm39)	missense	probably damaging	1.00
R8208:Dennd4b	UTSW	3	90,178,278 (GRCm39)	missense	possibly damaging	0.78
R8444:Dennd4b	UTSW	3	90,181,259 (GRCm39)	missense	probably benign	0.27
R8502:Dennd4b	UTSW	3	90,181,165 (GRCm39)	missense	probably damaging	0.98
R8735:Dennd4b	UTSW	3	90,185,172 (GRCm39)	missense	probably damaging	1.00
R8933:Dennd4b	UTSW	3	90,186,523 (GRCm39)	missense	probably benign	0.05
R9031:Dennd4b	UTSW	3	90,178,188 (GRCm39)	missense	probably benign
R9335:Dennd4b	UTSW	3	90,175,611 (GRCm39)	missense	probably damaging	1.00
R9456:Dennd4b	UTSW	3	90,178,515 (GRCm39)	missense	probably damaging	1.00
R9747:Dennd4b	UTSW	3	90,177,828 (GRCm39)	missense	possibly damaging	0.76
X0024:Dennd4b	UTSW	3	90,178,278 (GRCm39)	missense	possibly damaging	0.78
Z1176:Dennd4b	UTSW	3	90,186,802 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CTGTGAGCAGAGAGCTGTGGTAAC -3'
(R):5'- AGATGGCTTCTCCCAGAGACACAC -3'

Sequencing Primer
(F):5'- ACAAGCTGTACTCTCAGCTG -3'
(R):5'- AGTCCTAGAGATCTATCTGGAGG -3'

Posted On

2013-04-16