Mutagenetix > Incidental Mutation

Incidental Mutation 'R2034:Casp12'

224337

Institutional Source

Beutler Lab

Gene Symbol

Casp12

Ensembl Gene

ENSMUSG00000025887

Gene Name

caspase 12

Synonyms

MMRRC Submission

040041-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2034 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

5345430-5373032 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 5346491 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 6 (T6I)

Ref Sequence

ENSEMBL: ENSMUSP00000121565 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027009] [ENSMUST00000151332] [ENSMUST00000151788]

AlphaFold

O08736

Predicted Effect

probably benign
Transcript: ENSMUST00000027009
AA Change: T6I

PolyPhen 2 Score 0.025 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000027009
Gene: ENSMUSG00000025887
AA Change: T6I

Domain	Start	End	E-Value	Type
CARD	1	83	3.54e-2	SMART
CASc	165	417	2.59e-132	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138308

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149520

Predicted Effect

probably benign
Transcript: ENSMUST00000151332
AA Change: T6I

PolyPhen 2 Score 0.044 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000122201
Gene: ENSMUSG00000025887
AA Change: T6I

Domain	Start	End	E-Value	Type
CASc	95	347	2.59e-132	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000151788
AA Change: T6I

PolyPhen 2 Score 0.971 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000121565
Gene: ENSMUSG00000025887
AA Change: T6I

Domain	Start	End	E-Value	Type
CARD	1	83	3.54e-2	SMART
Pfam:Peptidase_C14	176	230	1.1e-8	PFAM

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.2%

Validation Efficiency

100% (71/71)

MGI Phenotype

PHENOTYPE: Homozygous mice for some mutations of this gene display resistance to ER stress-induced apoptosis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810408A11Rik	T	C	11: 69,900,559	I65V	probably benign	Het
Abca13	A	G	11: 9,292,628	N1497S	possibly damaging	Het
Afmid	C	A	11: 117,835,235	N184K	probably benign	Het
Ampd2	A	T	3: 108,077,363	I459N	possibly damaging	Het
Anapc1	T	C	2: 128,648,458	D1018G	possibly damaging	Het
Ano9	T	A	7: 141,108,135	I223F	probably damaging	Het
B3gnt6	A	G	7: 98,194,018	L245P	possibly damaging	Het
Bag6	G	A	17: 35,144,692	R784Q	probably damaging	Het
Brca1	C	G	11: 101,489,849	S1786T	probably benign	Het
Btbd3	T	G	2: 138,278,983	S26A	probably benign	Het
Cacna1d	C	A	14: 30,089,863	V1277L	probably damaging	Het
Col7a1	T	C	9: 108,963,007	V1262A	unknown	Het
Crh	C	A	3: 19,694,098	G127C	probably damaging	Het
D5Ertd579e	A	T	5: 36,613,538	L64*	probably null	Het
Dab1	C	T	4: 104,731,751	A524V	probably benign	Het
Ddc	T	A	11: 11,880,456	I63L	probably benign	Het
Eif3a	C	T	19: 60,762,130		probably benign	Het
Fsip2	T	A	2: 82,989,494	N5190K	probably benign	Het
Gm5420	A	G	10: 21,691,613		noncoding transcript	Het
Grb14	A	G	2: 64,923,529		probably benign	Het
Gsap	A	T	5: 21,270,595	I545F	probably damaging	Het
Hectd1	A	T	12: 51,757,116		probably null	Het
Helz2	G	A	2: 181,232,578	P2041L	probably damaging	Het
Herc1	G	A	9: 66,441,972	A2038T	probably benign	Het
Il10	C	A	1: 131,024,185	Q152K	probably benign	Het
Klrg1	A	G	6: 122,279,637		probably null	Het
Lrig2	T	C	3: 104,494,092	T160A	probably benign	Het
Mmd2	A	T	5: 142,575,184		probably null	Het
Mmp2	C	T	8: 92,836,912	S338F	probably damaging	Het
Nalcn	T	G	14: 123,283,603	D1630A	probably benign	Het
Ncoa2	T	C	1: 13,164,983	S909G	probably benign	Het
Neb	A	T	2: 52,280,611	M1683K	possibly damaging	Het
Nfe2l3	A	G	6: 51,458,370	I637V	possibly damaging	Het
Npw	G	A	17: 24,658,268	S53F	probably damaging	Het
Nrbf2	A	T	10: 67,275,564		probably benign	Het
Nrros	C	T	16: 32,144,157	W311*	probably null	Het
Nup188	T	A	2: 30,310,085		probably benign	Het
Olfr1444	T	A	19: 12,861,787	M4K	possibly damaging	Het
Olfr726	T	C	14: 50,083,983	M233V	probably benign	Het
Parp4	A	T	14: 56,634,263	I1133F	probably damaging	Het
Pcdhb11	T	C	18: 37,422,493	V292A	probably benign	Het
Pcnx2	A	G	8: 125,818,667		probably null	Het
Phf2	A	G	13: 48,817,730	S489P	unknown	Het
Pik3r5	T	A	11: 68,493,577	N598K	probably damaging	Het
Pikfyve	A	T	1: 65,222,357	E432D	probably damaging	Het
Pink1	T	C	4: 138,318,032	I274V	possibly damaging	Het
Pkhd1	G	A	1: 20,200,669	T3220I	probably damaging	Het
Plxna2	A	G	1: 194,780,594	I890V	probably benign	Het
Pomgnt1	T	C	4: 116,157,927	V492A	possibly damaging	Het
Prp2	G	T	6: 132,595,984		probably null	Het
Rabl6	T	C	2: 25,585,432	E543G	possibly damaging	Het
Rgp1	T	A	4: 43,581,605		probably null	Het
Rps6kb2	T	C	19: 4,161,107	T140A	probably damaging	Het
S100a11	T	C	3: 93,526,122	I91T	probably benign	Het
Serpine2	A	G	1: 79,796,852	L230P	probably damaging	Het
Sh3tc2	A	G	18: 61,987,666	D370G	probably damaging	Het
Sim2	A	C	16: 94,085,942	I43L	probably damaging	Het
Skp2	C	A	15: 9,113,698	G376C	probably damaging	Het
Slc14a2	A	G	18: 78,183,583	L419P	probably damaging	Het
Srgap1	C	T	10: 121,792,746	E817K	probably damaging	Het
Stag3	A	G	5: 138,298,001	E442G	possibly damaging	Het
Sulf1	A	G	1: 12,820,421	N361S	probably damaging	Het
Tmco6	A	G	18: 36,737,856		probably null	Het
Tmem104	T	A	11: 115,243,547	I303N	probably benign	Het
Ttll6	G	T	11: 96,135,526	D86Y	probably damaging	Het
Vmn1r120	T	G	7: 21,052,958	E276A	possibly damaging	Het
Vmn1r64	A	G	7: 5,883,989	M185T	probably benign	Het
Vmn2r85	A	T	10: 130,426,373		probably benign	Het
Vwa3a	A	T	7: 120,782,645	K568*	probably null	Het
Zcchc11	C	T	4: 108,512,195	R651W	probably damaging	Het

Other mutations in Casp12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00667:Casp12	APN	9	5352665	splice site	probably null
IGL00717:Casp12	APN	9	5352702	missense	probably damaging	1.00
IGL02326:Casp12	APN	9	5358317	missense	possibly damaging	0.92
R0016:Casp12	UTSW	9	5352844	missense	probably null	0.01
R0016:Casp12	UTSW	9	5352844	missense	probably null	0.01
R0329:Casp12	UTSW	9	5345534	splice site	probably benign
R0392:Casp12	UTSW	9	5348973	splice site	probably benign
R0584:Casp12	UTSW	9	5352268	missense	probably null	0.00
R0609:Casp12	UTSW	9	5346554	missense	probably damaging	1.00
R1099:Casp12	UTSW	9	5352204	missense	probably benign
R1951:Casp12	UTSW	9	5348959	critical splice donor site	probably null
R4208:Casp12	UTSW	9	5346629	missense	probably damaging	1.00
R4558:Casp12	UTSW	9	5352742	missense	probably damaging	1.00
R4592:Casp12	UTSW	9	5352923	intron	probably benign
R4597:Casp12	UTSW	9	5348941	missense	possibly damaging	0.55
R4913:Casp12	UTSW	9	5358726	missense	probably damaging	1.00
R4965:Casp12	UTSW	9	5352250	missense	probably benign	0.00
R5495:Casp12	UTSW	9	5353797	missense	possibly damaging	0.95
R5777:Casp12	UTSW	9	5354548	missense	probably benign	0.01
R6641:Casp12	UTSW	9	5354612	missense	probably benign
R7159:Casp12	UTSW	9	5353763	missense	possibly damaging	0.89
R7320:Casp12	UTSW	9	5348897	critical splice acceptor site	probably null
R7349:Casp12	UTSW	9	5345527	critical splice donor site	probably null
R7636:Casp12	UTSW	9	5358344	missense	probably benign	0.15
R7695:Casp12	UTSW	9	5353641	missense	probably damaging	0.99
R7819:Casp12	UTSW	9	5352805	missense	probably damaging	1.00
R8071:Casp12	UTSW	9	5346647	missense	probably damaging	1.00
R8417:Casp12	UTSW	9	5352263	missense	probably benign	0.00
R8503:Casp12	UTSW	9	5346739	splice site	probably benign
R8514:Casp12	UTSW	9	5352735	missense	probably damaging	1.00
R9573:Casp12	UTSW	9	5354629	missense	probably benign
Z1088:Casp12	UTSW	9	5354582	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- TCCCATCCTTAGGCAGTGAG -3'
(R):5'- GTTCCTGGGAATTGGCAATG -3'

Sequencing Primer
(F):5'- CCTTAGGCAGTGAGTATAATTCCC -3'
(R):5'- GTGGCCAGCAAATATTTTTCCTG -3'

Posted On

2014-08-25