Mutagenetix > Incidental Mutation

Incidental Mutation 'R2037:Vmn1r6'

224774

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r6

Ensembl Gene

ENSMUSG00000115701

Gene Name

vomeronasal 1 receptor 6

Synonyms

V1rc20

MMRRC Submission

040044-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.131) question?

Stock #

R2037 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

56979340-56980251 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 56980109 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 235 (Y235F)

Ref Sequence

ENSEMBL: ENSMUSP00000154199 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079669] [ENSMUST00000226689] [ENSMUST00000227131] [ENSMUST00000227188] [ENSMUST00000227631] [ENSMUST00000227847] [ENSMUST00000228285]

AlphaFold

Q8R2D4

Predicted Effect

probably damaging
Transcript: ENSMUST00000079669
AA Change: Y257F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000078611
Gene: ENSMUSG00000115701
AA Change: Y257F

Domain	Start	End	E-Value	Type
Pfam:V1R	28	293	4.9e-54	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000226689
AA Change: Y257F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000227131
AA Change: Y257F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000227188
AA Change: Y235F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000227631
AA Change: Y235F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000227847
AA Change: Y257F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000228285
AA Change: Y257F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca8a	A	T	11: 109,980,810 (GRCm39)		probably null	Het
AI987944	T	C	7: 41,023,815 (GRCm39)	Y391C	probably benign	Het
Ankfn1	A	T	11: 89,346,946 (GRCm39)	S296T	probably benign	Het
Apob	A	G	12: 8,057,488 (GRCm39)	D1957G	probably benign	Het
Baz1a	G	T	12: 54,976,431 (GRCm39)	P415Q	probably damaging	Het
Brca2	T	A	5: 150,464,134 (GRCm39)	H1299Q	probably benign	Het
C7	G	T	15: 5,063,720 (GRCm39)	S227*	probably null	Het
Catsperb	A	T	12: 101,474,221 (GRCm39)	R306S	probably damaging	Het
Cbx3	T	A	6: 51,448,793 (GRCm39)		probably null	Het
Ccnt2	A	G	1: 127,731,136 (GRCm39)	Y671C	probably damaging	Het
Crocc	A	G	4: 140,774,253 (GRCm39)		probably null	Het
Ctr9	G	A	7: 110,646,014 (GRCm39)	V669I	probably benign	Het
Dck	T	G	5: 88,920,576 (GRCm39)	Y99D	probably damaging	Het
Ddx52	T	A	11: 83,835,432 (GRCm39)	D119E	probably benign	Het
Dnah10	A	T	5: 124,823,768 (GRCm39)	K596N	probably benign	Het
Dnah7a	A	T	1: 53,621,741 (GRCm39)	V1128E	probably benign	Het
Dph1	A	T	11: 75,076,679 (GRCm39)		probably null	Het
Enah	G	A	1: 181,749,537 (GRCm39)	P415L	probably damaging	Het
Enthd1	A	G	15: 80,444,550 (GRCm39)	S2P	possibly damaging	Het
Erc1	A	C	6: 119,699,216 (GRCm39)	V802G	possibly damaging	Het
F8	ATCTCTCTC	ATCTCTC	X: 74,366,604 (GRCm39)		probably null	Het
Fam169a	C	A	13: 97,243,600 (GRCm39)	A210E	probably benign	Het
Fcmr	A	G	1: 130,806,070 (GRCm39)	D342G	possibly damaging	Het
Fgfr4	T	G	13: 55,315,702 (GRCm39)	V743G	possibly damaging	Het
Fsip2	A	G	2: 82,808,856 (GRCm39)	D1725G	probably damaging	Het
Heatr5b	A	T	17: 79,136,934 (GRCm39)	C195*	probably null	Het
Herc2	G	A	7: 55,855,709 (GRCm39)	A3882T	probably damaging	Het
Il20	T	A	1: 130,836,115 (GRCm39)	N143Y	probably damaging	Het
Inpp5b	A	G	4: 124,692,092 (GRCm39)	S892G	probably damaging	Het
Ipo13	A	T	4: 117,761,858 (GRCm39)	Y447*	probably null	Het
Itprid1	A	G	6: 55,874,860 (GRCm39)	N270S	probably benign	Het
Kbtbd12	A	T	6: 88,594,779 (GRCm39)	N350K	probably benign	Het
Kiz	T	C	2: 146,811,880 (GRCm39)	F663S	probably damaging	Het
Matn2	A	G	15: 34,433,263 (GRCm39)	D870G	probably benign	Het
Methig1	C	T	15: 100,251,467 (GRCm39)	A126V	probably benign	Het
Mme	A	G	3: 63,235,681 (GRCm39)	D209G	probably null	Het
Mroh4	A	G	15: 74,481,610 (GRCm39)	F811L	possibly damaging	Het
Myo9b	G	T	8: 71,743,510 (GRCm39)	K190N	probably damaging	Het
Ncf1	T	C	5: 134,258,406 (GRCm39)	I6V	probably damaging	Het
Nmt2	T	C	2: 3,310,618 (GRCm39)	F121L	probably damaging	Het
Nol10	A	G	12: 17,411,152 (GRCm39)	D183G	probably benign	Het
Nsun7	T	C	5: 66,418,429 (GRCm39)	V53A	probably benign	Het
Or10u4	T	C	10: 129,802,009 (GRCm39)	I187V	probably benign	Het
Or8j3	T	C	2: 86,028,176 (GRCm39)	S307G	probably benign	Het
Or8k22	T	C	2: 86,162,774 (GRCm39)	N309D	probably benign	Het
Pappa2	A	T	1: 158,784,214 (GRCm39)	Y265*	probably null	Het
Pigg	G	A	5: 108,486,518 (GRCm39)	A724T	probably damaging	Het
Pik3r4	C	T	9: 105,527,534 (GRCm39)	R296C	probably benign	Het
Pkhd1l1	A	G	15: 44,431,617 (GRCm39)		probably null	Het
Pld4	A	G	12: 112,734,992 (GRCm39)	D483G	probably damaging	Het
Ppip5k1	C	T	2: 121,173,674 (GRCm39)	R399H	probably damaging	Het
Qrfpr	A	T	3: 36,236,806 (GRCm39)	H198Q	probably damaging	Het
Rasgrf2	A	T	13: 92,050,748 (GRCm39)	D883E	probably damaging	Het
Retnlg	T	C	16: 48,694,615 (GRCm39)	C88R	probably damaging	Het
Sin3a	C	T	9: 57,004,109 (GRCm39)	T287I	probably benign	Het
Slc44a1	GCC	GCCCCC	4: 53,563,243 (GRCm39)		probably benign	Het
Sppl2c	G	C	11: 104,077,307 (GRCm39)	V36L	probably benign	Het
Srp72	T	A	5: 77,124,338 (GRCm39)	I68N	probably damaging	Het
Srrm3	T	A	5: 135,883,231 (GRCm39)	S195R	probably damaging	Het
Srrm4	T	A	5: 116,605,887 (GRCm39)		probably benign	Het
Ssb	A	G	2: 69,699,163 (GRCm39)	S199G	probably benign	Het
Sult2a6	T	A	7: 13,988,634 (GRCm39)	Y42F	probably damaging	Het
Syne2	A	G	12: 76,072,343 (GRCm39)	T120A	probably benign	Het
Tas1r1	A	G	4: 152,112,627 (GRCm39)	F809L	probably damaging	Het
Tead3	A	G	17: 28,555,544 (GRCm39)	S117P	probably damaging	Het
Tefm	C	T	11: 80,031,056 (GRCm39)	R60H	probably damaging	Het
Tmem104	G	A	11: 115,092,221 (GRCm39)	R110H	possibly damaging	Het
Tnxb	G	A	17: 34,918,179 (GRCm39)	G2364D	probably damaging	Het
Vmn1r211	T	A	13: 23,036,134 (GRCm39)	I178F	probably damaging	Het
Xrcc5	C	A	1: 72,385,529 (GRCm39)	T540K	probably benign	Het

Other mutations in Vmn1r6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00905:Vmn1r6	APN	6	56,979,789 (GRCm39)	missense	probably damaging	1.00
IGL01011:Vmn1r6	APN	6	56,979,529 (GRCm39)	missense	probably benign	0.00
IGL01147:Vmn1r6	APN	6	56,979,626 (GRCm39)	missense	probably damaging	1.00
IGL01475:Vmn1r6	APN	6	56,979,896 (GRCm39)	missense	probably damaging	1.00
IGL01638:Vmn1r6	APN	6	56,980,177 (GRCm39)	nonsense	probably null
IGL01860:Vmn1r6	APN	6	56,979,674 (GRCm39)	nonsense	probably null
IGL01876:Vmn1r6	APN	6	56,979,446 (GRCm39)	missense	probably benign	0.12
IGL01988:Vmn1r6	APN	6	56,979,650 (GRCm39)	missense	probably damaging	0.99
R0531:Vmn1r6	UTSW	6	56,979,583 (GRCm39)	missense	probably benign	0.00
R1495:Vmn1r6	UTSW	6	56,980,058 (GRCm39)	missense	possibly damaging	0.58
R1733:Vmn1r6	UTSW	6	56,979,607 (GRCm39)	missense	probably damaging	1.00
R3625:Vmn1r6	UTSW	6	56,979,920 (GRCm39)	missense	probably damaging	0.96
R4353:Vmn1r6	UTSW	6	56,979,677 (GRCm39)	missense	possibly damaging	0.63
R4484:Vmn1r6	UTSW	6	56,980,174 (GRCm39)	missense	probably benign
R4854:Vmn1r6	UTSW	6	56,979,683 (GRCm39)	missense	probably benign	0.00
R5237:Vmn1r6	UTSW	6	56,980,179 (GRCm39)	missense	probably damaging	1.00
R5341:Vmn1r6	UTSW	6	56,979,789 (GRCm39)	missense	probably damaging	1.00
R5611:Vmn1r6	UTSW	6	56,979,362 (GRCm39)	missense	probably damaging	1.00
R6795:Vmn1r6	UTSW	6	56,979,422 (GRCm39)	missense	possibly damaging	0.85
R8423:Vmn1r6	UTSW	6	56,979,495 (GRCm39)	missense	probably benign	0.30
R9249:Vmn1r6	UTSW	6	56,979,760 (GRCm39)	missense	probably benign
R9582:Vmn1r6	UTSW	6	56,979,925 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GGAGCCATGCTAACCACAAG -3'
(R):5'- TGCACTATAGAATAAACCGTGTGC -3'

Sequencing Primer
(F):5'- ATACATGGTGATTATCTTGTCCCGAC -3'
(R):5'- GACTGAAGGTTTTTCAGCATA -3'

Posted On

2014-08-25