Mutagenetix > Incidental Mutation

Incidental Mutation 'R2000:Lgals9'

225852

Institutional Source

Beutler Lab

Gene Symbol

Lgals9

Ensembl Gene

ENSMUSG00000001123

Gene Name

lectin, galactose binding, soluble 9

Synonyms

LGALS35, gal-9, Lgals5, galectin-9

MMRRC Submission

040010-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.082) question?

Stock #

R2000 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

78853805-78875750 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 78863996 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Aspartic acid at position 50 (N50D)

Ref Sequence

ENSEMBL: ENSMUSP00000103903 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000073001] [ENSMUST00000108268] [ENSMUST00000108269]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000073001
AA Change: N50D

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000072764
Gene: ENSMUSG00000001123
AA Change: N50D

Domain	Start	End	E-Value	Type
GLECT	15	147	6.58e-55	SMART
Gal-bind_lectin	21	146	5.24e-55	SMART
GLECT	222	352	5.38e-60	SMART
Gal-bind_lectin	228	352	1.33e-65	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000108268
AA Change: N50D

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000103903
Gene: ENSMUSG00000001123
AA Change: N50D

Domain	Start	End	E-Value	Type
GLECT	15	147	6.58e-55	SMART
Gal-bind_lectin	21	146	5.24e-55	SMART
GLECT	192	322	5.38e-60	SMART
Gal-bind_lectin	198	322	1.33e-65	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000108269
AA Change: N50D

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000103904
Gene: ENSMUSG00000001123
AA Change: N50D

Domain	Start	End	E-Value	Type
GLECT	15	147	6.58e-55	SMART
Gal-bind_lectin	21	146	5.24e-55	SMART
GLECT	223	353	5.38e-60	SMART
Gal-bind_lectin	229	353	1.33e-65	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140073

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.2%
20x: 95.0%

Validation Efficiency

98% (62/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was initially thought to represent a pseudogene of galectin 9; however, this transcript has good exon-intron structure and encodes a predicted protein of the same size as and highly similar to galectin 9. This gene is one of two similar loci on chromosome 17p similar to galectin 9 and now thought to be protein-encoding. This gene is the more centromeric gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit increased susceptibility to collagen-induced arthritis, increased T-helper 1 cells and decreased regulatory T cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Atf2	T	C	2: 73,693,584 (GRCm39)		probably null	Het
Atrn	T	C	2: 130,777,508 (GRCm39)	Y186H	probably damaging	Het
Birc6	T	C	17: 74,911,614 (GRCm39)	V1528A	possibly damaging	Het
Brpf3	A	C	17: 29,040,531 (GRCm39)	E984A	probably benign	Het
Btnl9	T	C	11: 49,059,948 (GRCm39)	N600S	probably benign	Het
Camk1d	A	T	2: 5,366,836 (GRCm39)	Y126*	probably null	Het
Casp8ap2	T	A	4: 32,634,874 (GRCm39)	L136H	probably damaging	Het
Cd46	A	G	1: 194,760,012 (GRCm39)	I280T	probably benign	Het
Cip2a	A	T	16: 48,835,332 (GRCm39)	Q699L	probably damaging	Het
Crebbp	A	T	16: 3,902,116 (GRCm39)	H2374Q	probably damaging	Het
Dock3	A	G	9: 106,870,160 (GRCm39)		probably benign	Het
Dph7	T	A	2: 24,861,653 (GRCm39)	D355E	probably benign	Het
Dync1li1	C	A	9: 114,542,631 (GRCm39)	F264L	probably benign	Het
Fer1l6	G	A	15: 58,474,160 (GRCm39)		probably benign	Het
Flt3	T	C	5: 147,278,048 (GRCm39)	D842G	probably damaging	Het
Fosl1	A	G	19: 5,500,383 (GRCm39)		probably benign	Het
Gabrr2	T	A	4: 33,084,400 (GRCm39)	I162N	probably damaging	Het
Gata6	T	C	18: 11,054,113 (GRCm39)	F14S	probably benign	Het
Gm15446	T	C	5: 110,090,677 (GRCm39)	S310P	possibly damaging	Het
Gmppa	A	C	1: 75,418,172 (GRCm39)	D190A	probably damaging	Het
Gpr108	C	T	17: 57,543,712 (GRCm39)	G455S	probably benign	Het
Gstm1	A	G	3: 107,922,127 (GRCm39)	F170S	probably damaging	Het
Gvin-ps6	G	A	7: 106,022,438 (GRCm39)	S188L	probably benign	Het
Gzf1	T	C	2: 148,526,531 (GRCm39)	I334T	probably benign	Het
Hadh	A	T	3: 131,038,888 (GRCm39)	I156K	probably benign	Het
Htr5a	G	A	5: 28,055,887 (GRCm39)	V293M	possibly damaging	Het
Ice1	C	T	13: 70,750,546 (GRCm39)	V47M	possibly damaging	Het
Ifnl3	G	T	7: 28,222,354 (GRCm39)	A32S	possibly damaging	Het
Itsn2	T	A	12: 4,716,176 (GRCm39)	Y978*	probably null	Het
Kif1a	G	T	1: 92,982,051 (GRCm39)	T792N	probably damaging	Het
Lrp2	A	G	2: 69,297,434 (GRCm39)	Y3176H	probably damaging	Het
Lvrn	A	T	18: 47,038,374 (GRCm39)	N976I	probably benign	Het
Magea10	A	T	X: 71,426,379 (GRCm39)	I205K	probably benign	Het
Myo1c	A	T	11: 75,561,405 (GRCm39)	M820L	probably damaging	Het
Neb	A	T	2: 52,102,982 (GRCm39)	C4222*	probably null	Het
Nkain2	T	A	10: 32,766,281 (GRCm39)		probably benign	Het
Or10g6	A	G	9: 39,933,985 (GRCm39)	I99V	probably benign	Het
Or3a1b	A	G	11: 74,012,406 (GRCm39)	Y97C	probably benign	Het
Or5d16	G	A	2: 87,773,490 (GRCm39)	L161F	probably benign	Het
Parp4	C	T	14: 56,851,181 (GRCm39)	T728M	probably damaging	Het
Pnma8a	T	A	7: 16,694,964 (GRCm39)	V273D	probably benign	Het
Ppp1r9b	A	G	11: 94,887,446 (GRCm39)	E486G	probably damaging	Het
Pth2	C	A	7: 44,831,146 (GRCm39)	R98S	possibly damaging	Het
Ramacl	A	T	13: 67,056,214 (GRCm39)	N69I	possibly damaging	Het
Rif1	T	A	2: 51,971,310 (GRCm39)	F263I	probably damaging	Het
Rnf213	A	T	11: 119,326,848 (GRCm39)	I1613F	probably damaging	Het
Rsbn1l	G	A	5: 21,107,368 (GRCm39)	H549Y	probably damaging	Het
Rtl1	C	A	12: 109,560,321 (GRCm39)	W506L	probably damaging	Het
Slc4a4	C	T	5: 89,176,206 (GRCm39)	P59L	probably damaging	Het
Smarcad1	A	G	6: 65,050,200 (GRCm39)	E273G	probably damaging	Het
Tectb	C	G	19: 55,169,431 (GRCm39)		probably benign	Het
Ttf1	T	A	2: 28,955,197 (GRCm39)	L187Q	possibly damaging	Het
Ttn	A	T	2: 76,800,047 (GRCm39)	I387N	probably damaging	Het
Ufsp1	T	C	5: 137,293,166 (GRCm39)		probably null	Het
Uox	A	C	3: 146,316,154 (GRCm39)	K30Q	possibly damaging	Het
Ush1c	A	G	7: 45,870,857 (GRCm39)	S327P	probably damaging	Het
Wwc1	A	T	11: 35,767,374 (GRCm39)	L419Q	probably damaging	Het
Xrn1	C	T	9: 95,927,616 (GRCm39)	Q1463*	probably null	Het
Yeats2	G	A	16: 20,005,141 (GRCm39)	A393T	probably benign	Het
Zfp101	C	T	17: 33,600,491 (GRCm39)	A422T	possibly damaging	Het

Other mutations in Lgals9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01410:Lgals9	APN	11	78,863,977 (GRCm39)	missense	probably damaging	1.00
IGL01415:Lgals9	APN	11	78,863,977 (GRCm39)	missense	probably damaging	1.00
IGL02194:Lgals9	APN	11	78,857,746 (GRCm39)	critical splice acceptor site	probably null
IGL02390:Lgals9	APN	11	78,854,361 (GRCm39)	missense	probably damaging	1.00
IGL02987:Lgals9	APN	11	78,858,303 (GRCm39)	missense	possibly damaging	0.93
IGL03288:Lgals9	APN	11	78,875,626 (GRCm39)	missense	probably benign	0.01
IGL03388:Lgals9	APN	11	78,854,247 (GRCm39)	missense	probably damaging	0.99
R0057:Lgals9	UTSW	11	78,862,262 (GRCm39)	splice site	probably benign
R0143:Lgals9	UTSW	11	78,854,361 (GRCm39)	missense	probably damaging	1.00
R0325:Lgals9	UTSW	11	78,854,274 (GRCm39)	missense	probably damaging	0.99
R0522:Lgals9	UTSW	11	78,856,638 (GRCm39)	missense	possibly damaging	0.95
R0542:Lgals9	UTSW	11	78,860,546 (GRCm39)	missense	possibly damaging	0.68
R0673:Lgals9	UTSW	11	78,856,679 (GRCm39)	missense	probably damaging	1.00
R1312:Lgals9	UTSW	11	78,867,443 (GRCm39)	nonsense	probably null
R4083:Lgals9	UTSW	11	78,860,589 (GRCm39)	missense	possibly damaging	0.63
R4084:Lgals9	UTSW	11	78,860,589 (GRCm39)	missense	possibly damaging	0.63
R4157:Lgals9	UTSW	11	78,863,933 (GRCm39)	missense	possibly damaging	0.88
R4204:Lgals9	UTSW	11	78,860,642 (GRCm39)	splice site	probably benign
R4892:Lgals9	UTSW	11	78,856,909 (GRCm39)	missense	probably benign	0.00
R5650:Lgals9	UTSW	11	78,863,980 (GRCm39)	missense	probably damaging	0.97
R6155:Lgals9	UTSW	11	78,854,331 (GRCm39)	missense	probably benign	0.16
R6166:Lgals9	UTSW	11	78,862,184 (GRCm39)	missense	probably benign	0.14
R6405:Lgals9	UTSW	11	78,862,211 (GRCm39)	missense	probably benign	0.42
R6853:Lgals9	UTSW	11	78,856,832 (GRCm39)	missense	probably benign	0.16
R8035:Lgals9	UTSW	11	78,854,302 (GRCm39)	nonsense	probably null
R8862:Lgals9	UTSW	11	78,860,716 (GRCm39)	intron	probably benign

Predicted Primers

PCR Primer
(F):5'- AATGTGGTTTGCCCAGGGAG -3'
(R):5'- GCAAAATGCGGTAACTGCAC -3'

Sequencing Primer
(F):5'- TTGAACTCTGACCTCTGCACCAG -3'
(R):5'- TGCGGTAACTGCACAAAATG -3'

Posted On

2014-08-25