Mutagenetix > Incidental Mutation

Incidental Mutation 'R2051:Ror1'

226401

Institutional Source

Beutler Lab

Gene Symbol

Ror1

Ensembl Gene

ENSMUSG00000035305

Gene Name

receptor tyrosine kinase-like orphan receptor 1

Synonyms

2810404D04Rik, Ntrkr1

MMRRC Submission

040058-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2051 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

100095791-100444765 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 100407868 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 180 (R180*)

Ref Sequence

ENSEMBL: ENSMUSP00000048171 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039630]

AlphaFold

Q9Z139

Predicted Effect

probably null
Transcript: ENSMUST00000039630
AA Change: R180*

SMART Domains

Protein: ENSMUSP00000048171
Gene: ENSMUSG00000035305
AA Change: R180*

Domain	Start	End	E-Value	Type
signal peptide	1	29	N/A	INTRINSIC
IGc2	70	138	8.37e-15	SMART
Pfam:Fz	170	290	4.9e-13	PFAM
KR	311	393	7.57e-47	SMART
transmembrane domain	404	426	N/A	INTRINSIC
TyrKc	473	746	2.46e-137	SMART
low complexity region	753	762	N/A	INTRINSIC
low complexity region	817	828	N/A	INTRINSIC
low complexity region	849	864	N/A	INTRINSIC

Coding Region Coverage

1x: 99.1%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a receptor tyrosine kinase that has been implicated in nervous system development, specifically in the maintenance of neural progenitor cell fate, neurite extension and synapse formation. The encoded protein, likely a pseudokinase that lacks catalytic activity, may also regulate adipogenesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2015]
PHENOTYPE: Mice homozygous for some disruptions in this gene die within the first day after birth from respiratory defects. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 99 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700123K08Rik	G	A	5: 138,564,185 (GRCm38)	T98M	probably damaging	Het
4932414N04Rik	G	T	2: 68,711,048 (GRCm38)	K10N	possibly damaging	Het
Aadat	T	A	8: 60,507,139 (GRCm38)	S40T	probably benign	Het
Abca13	A	G	11: 9,328,098 (GRCm38)	I3093V	probably benign	Het
Acacb	A	T	5: 114,245,890 (GRCm38)	Q2160L	probably damaging	Het
Acp6	G	T	3: 97,168,017 (GRCm38)	S189I	probably benign	Het
Actr5	A	T	2: 158,632,293 (GRCm38)	M339L	probably benign	Het
Adcy1	A	T	11: 7,161,885 (GRCm38)	K917*	probably null	Het
Adgrg5	C	T	8: 94,942,067 (GRCm38)	R504C	probably benign	Het
Ago1	T	C	4: 126,460,453 (GRCm38)	H188R	probably benign	Het
Akap9	T	A	5: 3,975,685 (GRCm38)	C23*	probably null	Het
Ank3	T	C	10: 69,898,090 (GRCm38)	I728T	probably damaging	Het
Ankrd50	A	G	3: 38,454,493 (GRCm38)	S1242P	probably benign	Het
Arhgap29	G	A	3: 121,981,860 (GRCm38)	R84H	probably benign	Het
Arhgef10	A	G	8: 14,945,320 (GRCm38)	D7G	probably null	Het
Arid4b	A	G	13: 14,187,645 (GRCm38)	E898G	probably damaging	Het
Atrnl1	A	G	19: 57,691,849 (GRCm38)	N727S	probably benign	Het
Baalc	G	T	15: 38,933,234 (GRCm38)		probably benign	Het
Cdc25c	G	C	18: 34,738,239 (GRCm38)	L275V	probably damaging	Het
Chpf2	G	T	5: 24,591,276 (GRCm38)	V407L	probably benign	Het
Chrnb3	C	A	8: 27,386,811 (GRCm38)	N84K	probably damaging	Het
Cnot1	A	G	8: 95,724,593 (GRCm38)	F2171L	possibly damaging	Het
Csmd3	C	T	15: 48,621,993 (GRCm38)		probably null	Het
Cux1	T	A	5: 136,332,658 (GRCm38)	Q138L	probably damaging	Het
Cyp2c65	A	G	19: 39,082,231 (GRCm38)	N286S	probably benign	Het
Dclre1b	T	C	3: 103,809,040 (GRCm38)	S17G	possibly damaging	Het
Dlgap5	A	G	14: 47,411,484 (GRCm38)	S221P	probably benign	Het
Dnah1	T	G	14: 31,279,123 (GRCm38)	T2422P	probably damaging	Het
Enpp1	A	G	10: 24,711,804 (GRCm38)		probably null	Het
Erbb2	T	C	11: 98,420,172 (GRCm38)	C53R	probably damaging	Het
Exoc8	A	G	8: 124,895,480 (GRCm38)	V716A	probably benign	Het
Fam193a	T	A	5: 34,462,150 (GRCm38)	D766E	probably benign	Het
Fbxo43	C	A	15: 36,162,132 (GRCm38)	G310W	probably damaging	Het
Fcgbp	C	T	7: 28,120,360 (GRCm38)	T2504I	probably damaging	Het
Fnbp4	C	T	2: 90,757,532 (GRCm38)	P418L	probably benign	Het
Gjd2	T	C	2: 114,011,058 (GRCm38)	T313A	probably damaging	Het
Gm12695	T	A	4: 96,769,771 (GRCm38)	R54W	probably damaging	Het
Gm128	T	C	3: 95,240,740 (GRCm38)	D81G	possibly damaging	Het
Gm21834	A	G	17: 57,741,768 (GRCm38)	V151A	possibly damaging	Het
Grhl1	T	A	12: 24,586,152 (GRCm38)		probably null	Het
Hcn1	C	T	13: 117,976,083 (GRCm38)	T861I	probably damaging	Het
Herc6	C	A	6: 57,625,976 (GRCm38)	Q547K	probably benign	Het
Iqgap3	T	C	3: 88,120,167 (GRCm38)	L699P	probably damaging	Het
Kank4	T	C	4: 98,780,102 (GRCm38)	D36G	probably damaging	Het
Kcnk5	A	T	14: 20,142,209 (GRCm38)	S295T	probably damaging	Het
Krt18	T	C	15: 102,029,500 (GRCm38)	V144A	probably benign	Het
Krtap9-5	A	G	11: 99,949,204 (GRCm38)	I244V	unknown	Het
Leng1	T	G	7: 3,665,401 (GRCm38)	N16T	probably damaging	Het
Lss	A	G	10: 76,531,878 (GRCm38)	K15E	possibly damaging	Het
Mastl	G	T	2: 23,132,824 (GRCm38)	A629E	possibly damaging	Het
Mavs	G	C	2: 131,240,450 (GRCm38)	A85P	possibly damaging	Het
Nav3	T	C	10: 109,824,675 (GRCm38)	D678G	probably damaging	Het
Nsd3	T	G	8: 25,691,089 (GRCm38)	S906A	probably damaging	Het
Nsfl1c	A	G	2: 151,503,082 (GRCm38)	N118S	probably damaging	Het
Nup205	T	A	6: 35,230,516 (GRCm38)	M1501K	probably benign	Het
Olfr1178	C	T	2: 88,391,538 (GRCm38)	T97M	possibly damaging	Het
Olfr429	T	A	1: 174,089,219 (GRCm38)	Y60N	possibly damaging	Het
Pax8	A	G	2: 24,436,508 (GRCm38)	S281P	probably benign	Het
Pds5b	T	G	5: 150,748,190 (GRCm38)	I433R	probably damaging	Het
Peg3	T	C	7: 6,712,721 (GRCm38)	N117D	probably damaging	Het
Pfkm	A	T	15: 98,131,692 (GRCm38)	D728V	probably benign	Het
Phkb	T	C	8: 86,049,821 (GRCm38)		probably null	Het
Pkp4	T	C	2: 59,334,904 (GRCm38)	V704A	probably benign	Het
Ppfia2	T	A	10: 106,837,299 (GRCm38)	S501T	probably damaging	Het
Ptpru	T	C	4: 131,819,087 (GRCm38)	E284G	possibly damaging	Het
Ryr3	T	A	2: 112,756,641 (GRCm38)	Y2666F	probably damaging	Het
Sec23a	C	A	12: 58,990,968 (GRCm38)		probably null	Het
Sertad3	C	T	7: 27,476,269 (GRCm38)	Q43*	probably null	Het
Setd2	C	T	9: 110,550,890 (GRCm38)	H1258Y	probably benign	Het
Sharpin	A	G	15: 76,348,207 (GRCm38)	S177P	probably benign	Het
Skap1	T	C	11: 96,541,463 (GRCm38)	F86S	possibly damaging	Het
Slc8a2	T	C	7: 16,141,015 (GRCm38)	I396T	probably damaging	Het
Slc9a2	T	C	1: 40,726,437 (GRCm38)	F329S	probably damaging	Het
Slx4ip	C	T	2: 137,066,205 (GRCm38)	L161F	possibly damaging	Het
Sox4	A	G	13: 28,952,781 (GRCm38)	S81P	probably damaging	Het
Ssc4d	G	T	5: 135,970,264 (GRCm38)	S28R	probably benign	Het
St8sia2	C	T	7: 73,943,202 (GRCm38)	G369S	possibly damaging	Het
Swt1	T	C	1: 151,372,330 (GRCm38)	Y836C	probably damaging	Het
Taar7d	A	G	10: 24,028,006 (GRCm38)	D262G	probably benign	Het
Taar8b	T	A	10: 24,091,314 (GRCm38)	L327F	probably benign	Het
Tars	A	T	15: 11,393,194 (GRCm38)	L138*	probably null	Het
Tbcd	A	T	11: 121,453,670 (GRCm38)	D75V	probably damaging	Het
Tesc	A	G	5: 118,046,329 (GRCm38)	I25V	probably damaging	Het
Tmem132e	G	T	11: 82,440,438 (GRCm38)	S407I	probably damaging	Het
Tmem50b	C	A	16: 91,580,292 (GRCm38)	A95S	possibly damaging	Het
Tnr	T	C	1: 159,892,033 (GRCm38)	I960T	probably benign	Het
Tns2	C	T	15: 102,108,934 (GRCm38)	R281C	probably damaging	Het
Tpcn1	G	C	5: 120,543,388 (GRCm38)	P532A	probably damaging	Het
Tpsb2	T	C	17: 25,366,565 (GRCm38)		probably benign	Het
Triobp	C	A	15: 79,004,540 (GRCm38)	H1948Q	probably damaging	Het
Tshb	T	C	3: 102,777,541 (GRCm38)	I116V	probably benign	Het
Ttc13	A	T	8: 124,672,211 (GRCm38)		probably null	Het
Usp34	A	T	11: 23,464,468 (GRCm38)	T2804S	probably damaging	Het
Vmn2r18	A	T	5: 151,562,551 (GRCm38)	C493S	possibly damaging	Het
Vmn2r2	T	C	3: 64,117,345 (GRCm38)	K605R	possibly damaging	Het
Vmn2r37	T	C	7: 9,217,793 (GRCm38)	Y357C	probably damaging	Het
Zc3h6	T	G	2: 129,015,618 (GRCm38)	S686A	possibly damaging	Het
Zfp608	G	A	18: 54,988,314 (GRCm38)	P67L	probably benign	Het
Zyg11a	T	C	4: 108,192,047 (GRCm38)		probably benign	Het

Other mutations in Ror1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00838:Ror1	APN	4	100,333,743 (GRCm38)	missense	probably damaging	1.00
IGL00939:Ror1	APN	4	100,441,226 (GRCm38)	missense	probably benign	0.01
IGL01408:Ror1	APN	4	100,333,787 (GRCm38)	missense	probably damaging	1.00
IGL01678:Ror1	APN	4	100,425,968 (GRCm38)	missense	possibly damaging	0.68
IGL01700:Ror1	APN	4	100,409,771 (GRCm38)	missense	probably damaging	1.00
IGL01985:Ror1	APN	4	100,425,964 (GRCm38)	missense	possibly damaging	0.94
IGL02002:Ror1	APN	4	100,441,184 (GRCm38)	missense	probably damaging	1.00
IGL02634:Ror1	APN	4	100,426,110 (GRCm38)	missense	probably benign	0.00
IGL02995:Ror1	APN	4	100,334,525 (GRCm38)	splice site	probably benign
IGL03033:Ror1	APN	4	100,411,895 (GRCm38)	missense	possibly damaging	0.67
IGL03207:Ror1	APN	4	100,407,945 (GRCm38)	splice site	probably null
F5770:Ror1	UTSW	4	100,440,933 (GRCm38)	missense	probably damaging	0.99
R0256:Ror1	UTSW	4	100,409,745 (GRCm38)	missense	probably benign	0.20
R0417:Ror1	UTSW	4	100,412,000 (GRCm38)	missense	possibly damaging	0.94
R0525:Ror1	UTSW	4	100,441,520 (GRCm38)	missense	probably damaging	1.00
R1034:Ror1	UTSW	4	100,333,620 (GRCm38)	nonsense	probably null
R1278:Ror1	UTSW	4	100,441,878 (GRCm38)	missense	possibly damaging	0.69
R1368:Ror1	UTSW	4	100,441,137 (GRCm38)	missense	possibly damaging	0.94
R1437:Ror1	UTSW	4	100,412,109 (GRCm38)	missense	probably benign
R1441:Ror1	UTSW	4	100,440,983 (GRCm38)	missense	probably benign
R1544:Ror1	UTSW	4	100,441,986 (GRCm38)	missense	probably damaging	1.00
R1717:Ror1	UTSW	4	100,302,938 (GRCm38)	missense	probably benign
R1857:Ror1	UTSW	4	100,441,503 (GRCm38)	missense	probably damaging	1.00
R2018:Ror1	UTSW	4	100,407,841 (GRCm38)	nonsense	probably null
R2127:Ror1	UTSW	4	100,442,093 (GRCm38)	missense	probably benign
R2132:Ror1	UTSW	4	100,410,025 (GRCm38)	missense	probably benign	0.35
R2133:Ror1	UTSW	4	100,410,025 (GRCm38)	missense	probably benign	0.35
R2176:Ror1	UTSW	4	100,441,874 (GRCm38)	missense	probably damaging	0.99
R2431:Ror1	UTSW	4	100,441,155 (GRCm38)	missense	probably damaging	1.00
R2896:Ror1	UTSW	4	100,096,280 (GRCm38)	missense	unknown
R3005:Ror1	UTSW	4	100,441,764 (GRCm38)	missense	probably damaging	0.99
R3780:Ror1	UTSW	4	100,412,117 (GRCm38)	missense	probably benign	0.34
R3850:Ror1	UTSW	4	100,442,160 (GRCm38)	missense	possibly damaging	0.90
R3861:Ror1	UTSW	4	100,407,923 (GRCm38)	missense	possibly damaging	0.46
R4599:Ror1	UTSW	4	100,407,910 (GRCm38)	missense	probably damaging	0.99
R4863:Ror1	UTSW	4	100,409,804 (GRCm38)	missense	probably damaging	0.99
R4871:Ror1	UTSW	4	100,425,998 (GRCm38)	missense	probably benign
R4990:Ror1	UTSW	4	100,441,964 (GRCm38)	missense	probably benign
R5023:Ror1	UTSW	4	100,425,932 (GRCm38)	missense	probably benign	0.01
R5028:Ror1	UTSW	4	100,411,936 (GRCm38)	missense	possibly damaging	0.67
R5079:Ror1	UTSW	4	100,441,422 (GRCm38)	missense	probably damaging	1.00
R5294:Ror1	UTSW	4	100,425,938 (GRCm38)	missense	probably benign	0.00
R5538:Ror1	UTSW	4	100,441,011 (GRCm38)	missense	probably benign
R6339:Ror1	UTSW	4	100,411,931 (GRCm38)	missense	possibly damaging	0.91
R6491:Ror1	UTSW	4	100,409,912 (GRCm38)	missense	possibly damaging	0.94
R6632:Ror1	UTSW	4	100,442,106 (GRCm38)	missense	probably benign
R6733:Ror1	UTSW	4	100,426,055 (GRCm38)	missense	probably benign
R7022:Ror1	UTSW	4	100,407,911 (GRCm38)	missense	probably damaging	1.00
R7054:Ror1	UTSW	4	100,442,239 (GRCm38)	missense	probably benign	0.00
R7121:Ror1	UTSW	4	100,302,945 (GRCm38)	missense	probably benign	0.00
R7350:Ror1	UTSW	4	100,425,943 (GRCm38)	missense	probably benign	0.00
R7492:Ror1	UTSW	4	100,441,059 (GRCm38)	missense	probably benign	0.22
R7502:Ror1	UTSW	4	100,333,630 (GRCm38)	missense	probably benign	0.03
R7531:Ror1	UTSW	4	100,441,191 (GRCm38)	missense	probably damaging	1.00
R7661:Ror1	UTSW	4	100,441,490 (GRCm38)	missense	probably damaging	1.00
R7822:Ror1	UTSW	4	100,441,367 (GRCm38)	missense	probably damaging	1.00
R7831:Ror1	UTSW	4	100,441,098 (GRCm38)	missense	probably benign	0.01
R8366:Ror1	UTSW	4	100,409,998 (GRCm38)	missense	possibly damaging	0.91
R8539:Ror1	UTSW	4	100,441,887 (GRCm38)	missense	possibly damaging	0.71
R8757:Ror1	UTSW	4	100,440,883 (GRCm38)	missense	probably benign	0.01
R8862:Ror1	UTSW	4	100,334,518 (GRCm38)	critical splice donor site	probably null
R8913:Ror1	UTSW	4	100,407,830 (GRCm38)	missense	possibly damaging	0.89
R9382:Ror1	UTSW	4	100,334,512 (GRCm38)	missense	probably benign	0.00
V7580:Ror1	UTSW	4	100,440,933 (GRCm38)	missense	probably damaging	0.99
V7583:Ror1	UTSW	4	100,440,933 (GRCm38)	missense	probably damaging	0.99
X0020:Ror1	UTSW	4	100,426,090 (GRCm38)	missense	probably benign	0.02
Z1177:Ror1	UTSW	4	100,302,919 (GRCm38)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TTATATGGTGCCCAACTGCG -3'
(R):5'- GTAAATTCCAGAGCACAGAGATCAC -3'

Sequencing Primer
(F):5'- GCCCCCTTGTGACCATTTAGAG -3'
(R):5'- GAGCACAGAGATCACATCTTATGC -3'

Posted On

2014-09-17