Incidental Mutation 'R2066:Vmn1r55'
ID 226678
Institutional Source Beutler Lab
Gene Symbol Vmn1r55
Ensembl Gene ENSMUSG00000074402
Gene Name vomeronasal 1 receptor 55
Synonyms LOC384522, V1rd5, LOC236535
MMRRC Submission 040071-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.054) question?
Stock # R2066 (G1)
Quality Score 225
Status Validated
Chromosome 7
Chromosomal Location 5149489-5150421 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 5150048 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 125 (V125A)
Ref Sequence ENSEMBL: ENSMUSP00000096443 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000098844]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000098844
AA Change: V125A

PolyPhen 2 Score 0.910 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000096443
Gene: ENSMUSG00000074402
AA Change: V125A

DomainStartEndE-ValueType
Pfam:TAS2R 1 286 3.7e-14 PFAM
Pfam:7tm_1 20 279 4e-8 PFAM
Pfam:V1R 31 286 5.5e-17 PFAM
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.6%
Validation Efficiency 100% (79/79)
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933436I01Rik T A X: 66,964,308 (GRCm39) I184L probably benign Het
9530002B09Rik T A 4: 122,583,115 (GRCm39) probably benign Het
Acadl C T 1: 66,880,905 (GRCm39) probably null Het
Acss1 G A 2: 150,510,051 (GRCm39) Q23* probably null Het
Afap1l1 A T 18: 61,872,193 (GRCm39) probably null Het
Akt3 A G 1: 176,930,551 (GRCm39) S136P possibly damaging Het
Amy2a1 T C 3: 113,324,217 (GRCm39) I108V probably benign Het
Ano5 T G 7: 51,235,134 (GRCm39) L639R probably damaging Het
Arhgap26 T C 18: 39,439,781 (GRCm39) S71P probably damaging Het
B3gnt2 A G 11: 22,786,735 (GRCm39) L151P probably damaging Het
Bach1 A T 16: 87,526,513 (GRCm39) K658N probably damaging Het
Bdnf C A 2: 109,554,247 (GRCm39) T207K probably damaging Het
Bod1l G T 5: 41,962,499 (GRCm39) T2746K probably damaging Het
Brwd1 A G 16: 95,847,665 (GRCm39) S652P probably benign Het
Ccnt1 A T 15: 98,449,823 (GRCm39) H156Q probably benign Het
Clasp2 T A 9: 113,735,225 (GRCm39) I1021N possibly damaging Het
Cnep1r1 G T 8: 88,845,445 (GRCm39) probably benign Het
Cntn6 C T 6: 104,838,783 (GRCm39) R946* probably null Het
Dnaaf3 T C 7: 4,526,798 (GRCm39) I426M possibly damaging Het
Dnajc13 A T 9: 104,098,640 (GRCm39) I471N probably benign Het
Ehd1 T C 19: 6,348,108 (GRCm39) L362P probably benign Het
Emx2 A G 19: 59,450,130 (GRCm39) N149S probably benign Het
Fbln7 G T 2: 128,719,386 (GRCm39) R61L probably damaging Het
Fgb C A 3: 82,956,996 (GRCm39) D25Y probably benign Het
Filip1 A G 9: 79,727,498 (GRCm39) S374P probably damaging Het
Fry T A 5: 150,293,584 (GRCm39) probably benign Het
Gm12695 T C 4: 96,657,963 (GRCm39) T69A probably benign Het
Gm2959 A G 14: 42,235,658 (GRCm39) noncoding transcript Het
Gm9912 T C 3: 148,890,795 (GRCm39) T113A unknown Het
Hdlbp A G 1: 93,349,602 (GRCm39) probably benign Het
Hunk G A 16: 90,278,133 (GRCm39) probably null Het
Ifnb1 T A 4: 88,440,996 (GRCm39) I6F possibly damaging Het
Il2rg A G X: 100,311,416 (GRCm39) L57P possibly damaging Het
Ints1 A G 5: 139,753,251 (GRCm39) V720A probably benign Het
Invs T A 4: 48,396,287 (GRCm39) L320Q probably damaging Het
Jpt2 G A 17: 25,167,713 (GRCm39) Q79* probably null Het
Lingo2 A G 4: 35,709,179 (GRCm39) L267P probably benign Het
Lonp2 A G 8: 87,392,403 (GRCm39) T490A probably damaging Het
Meiob G T 17: 25,037,290 (GRCm39) R56L probably damaging Het
Mindy3 A T 2: 12,424,060 (GRCm39) S2T probably damaging Het
Mrm3 A T 11: 76,141,147 (GRCm39) D385V probably damaging Het
Mrto4 T C 4: 139,076,334 (GRCm39) K86E probably benign Het
Naf1 A G 8: 67,340,432 (GRCm39) D414G probably damaging Het
Nav1 C T 1: 135,376,742 (GRCm39) R1694Q probably damaging Het
Nbea A G 3: 55,875,567 (GRCm39) V1701A probably damaging Het
Nipal4 T G 11: 46,047,622 (GRCm39) D104A probably damaging Het
Npas4 A G 19: 5,037,442 (GRCm39) V284A probably damaging Het
Nup133 C A 8: 124,641,314 (GRCm39) D869Y probably damaging Het
Obscn G A 11: 59,026,558 (GRCm39) A215V possibly damaging Het
Or4c113 A G 2: 88,885,243 (GRCm39) Y176H probably damaging Het
Or8b12i G T 9: 20,082,850 (GRCm39) Q6K probably benign Het
Or8g24 T C 9: 38,989,510 (GRCm39) Y177C probably damaging Het
Pgs1 G A 11: 117,905,396 (GRCm39) probably benign Het
Phc2 T C 4: 128,640,929 (GRCm39) F672S probably damaging Het
Phldb2 A T 16: 45,591,121 (GRCm39) L970Q probably damaging Het
Plxnb3 T A X: 72,815,357 (GRCm39) Y1845* probably null Het
Ppip5k1 A G 2: 121,173,352 (GRCm39) probably benign Het
Prune2 A G 19: 17,098,042 (GRCm39) D1182G possibly damaging Het
Psg25 G A 7: 18,263,487 (GRCm39) T112I probably damaging Het
Sec61g T C 11: 16,458,124 (GRCm39) T24A probably benign Het
Skint1 T A 4: 111,882,730 (GRCm39) V258D probably benign Het
Sorbs1 T C 19: 40,353,472 (GRCm39) probably null Het
Sox2 C A 3: 34,705,456 (GRCm39) Q298K possibly damaging Het
Spatc1 T A 15: 76,167,737 (GRCm39) probably null Het
Szt2 T C 4: 118,231,177 (GRCm39) M2529V unknown Het
Thrap3 T C 4: 126,069,189 (GRCm39) Y654C possibly damaging Het
Tpp2 T G 1: 44,017,598 (GRCm39) I734S possibly damaging Het
Troap T C 15: 98,980,344 (GRCm39) L508P probably benign Het
Ttc28 C A 5: 111,373,799 (GRCm39) F1078L probably benign Het
Ttn T C 2: 76,544,717 (GRCm39) N32795S probably damaging Het
Ubap2 C T 4: 41,199,872 (GRCm39) A752T probably benign Het
Ugt2b36 T C 5: 87,240,100 (GRCm39) E95G probably benign Het
Vstm2a A T 11: 16,211,483 (GRCm39) I98F probably benign Het
Zdhhc13 T A 7: 48,466,175 (GRCm39) V284D probably benign Het
Zfp668 C A 7: 127,466,203 (GRCm39) R327L probably damaging Het
Zgrf1 T C 3: 127,406,999 (GRCm39) C1589R probably damaging Het
Other mutations in Vmn1r55
AlleleSourceChrCoordTypePredicted EffectPPH Score
R1771:Vmn1r55 UTSW 7 5,149,919 (GRCm39) missense probably benign 0.01
R2063:Vmn1r55 UTSW 7 5,150,048 (GRCm39) missense possibly damaging 0.91
R2064:Vmn1r55 UTSW 7 5,150,048 (GRCm39) missense possibly damaging 0.91
R2068:Vmn1r55 UTSW 7 5,150,048 (GRCm39) missense possibly damaging 0.91
R3737:Vmn1r55 UTSW 7 5,150,195 (GRCm39) missense probably damaging 0.99
R4409:Vmn1r55 UTSW 7 5,150,075 (GRCm39) missense probably benign 0.40
R4410:Vmn1r55 UTSW 7 5,150,075 (GRCm39) missense probably benign 0.40
R4700:Vmn1r55 UTSW 7 5,149,587 (GRCm39) missense probably damaging 0.98
R4700:Vmn1r55 UTSW 7 5,149,586 (GRCm39) missense probably damaging 1.00
R4755:Vmn1r55 UTSW 7 5,150,025 (GRCm39) missense probably damaging 1.00
R4945:Vmn1r55 UTSW 7 5,150,105 (GRCm39) missense probably damaging 1.00
R5064:Vmn1r55 UTSW 7 5,149,928 (GRCm39) missense probably benign 0.00
R5186:Vmn1r55 UTSW 7 5,149,985 (GRCm39) missense probably damaging 0.99
R5394:Vmn1r55 UTSW 7 5,149,995 (GRCm39) missense probably damaging 1.00
R6487:Vmn1r55 UTSW 7 5,149,554 (GRCm39) missense probably benign 0.23
R7855:Vmn1r55 UTSW 7 5,149,623 (GRCm39) missense probably benign
R8204:Vmn1r55 UTSW 7 5,150,285 (GRCm39) missense possibly damaging 0.48
R8376:Vmn1r55 UTSW 7 5,149,869 (GRCm39) missense probably benign 0.00
R9586:Vmn1r55 UTSW 7 5,149,770 (GRCm39) missense probably benign 0.03
R9688:Vmn1r55 UTSW 7 5,149,669 (GRCm39) missense probably benign 0.44
Predicted Primers PCR Primer
(F):5'- CCAGACCATGATGCCAATGAATATG -3'
(R):5'- TTCTAATCAACTTGGCTGTGGC -3'

Sequencing Primer
(F):5'- CCATGATGCCAATGAATATGATGTC -3'
(R):5'- CTGTGGCCAATGCATTCATG -3'
Posted On 2014-09-17