Mutagenetix > Incidental Mutations

Incidental Mutation 'R2069:Sp100'

226903

Institutional Source

Beutler Lab

Gene Symbol

Sp100

Ensembl Gene

ENSMUSG00000026222

Gene Name

nuclear antigen Sp100

Synonyms

MMRRC Submission

040074-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.236) question?

Stock #

R2069 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

85649988-85709998 bp(+) (GRCm38)

Type of Mutation

splice site (3 bp from exon)

DNA Base Change (assembly)

A to G at 85681142 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000118481 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054279] [ENSMUST00000054279] [ENSMUST00000066427] [ENSMUST00000145440] [ENSMUST00000147552] [ENSMUST00000150967] [ENSMUST00000153574] [ENSMUST00000153574] [ENSMUST00000155094]

AlphaFold

O35892

Predicted Effect

probably null
Transcript: ENSMUST00000054279

SMART Domains

Protein: ENSMUSP00000051705
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	4.9e-47	PFAM
low complexity region	334	345	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000054279

SMART Domains

Protein: ENSMUSP00000051705
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	4.9e-47	PFAM
low complexity region	334	345	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000066427

SMART Domains

Protein: ENSMUSP00000066399
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	21	119	3.4e-40	PFAM
low complexity region	320	335	N/A	INTRINSIC
low complexity region	367	377	N/A	INTRINSIC
SAND	386	459	8.85e-38	SMART
BROMO	473	573	1.16e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129951

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140758

Predicted Effect

probably benign
Transcript: ENSMUST00000145440

SMART Domains

Protein: ENSMUSP00000120604
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	3.7e-47	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000147552

SMART Domains

Protein: ENSMUSP00000116942
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	2.5e-46	PFAM
low complexity region	305	319	N/A	INTRINSIC
low complexity region	349	359	N/A	INTRINSIC
SAND	368	441	8.85e-38	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000150967

SMART Domains

Protein: ENSMUSP00000122899
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	2.1e-46	PFAM
low complexity region	324	334	N/A	INTRINSIC
SAND	343	416	8.85e-38	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000153574

SMART Domains

Protein: ENSMUSP00000122670
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	9.2e-47	PFAM
low complexity region	342	352	N/A	INTRINSIC
SAND	361	434	8.85e-38	SMART
Blast:BROMO	453	476	9e-6	BLAST

Predicted Effect

probably null
Transcript: ENSMUST00000153574

SMART Domains

Protein: ENSMUSP00000122670
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	9.2e-47	PFAM
low complexity region	342	352	N/A	INTRINSIC
SAND	361	434	8.85e-38	SMART
Blast:BROMO	453	476	9e-6	BLAST

Predicted Effect

probably null
Transcript: ENSMUST00000155094

SMART Domains

Protein: ENSMUSP00000118481
Gene: ENSMUSG00000026222

Domain	Start	End	E-Value	Type
Pfam:Sp100	19	122	1.6e-46	PFAM
low complexity region	320	335	N/A	INTRINSIC
low complexity region	367	377	N/A	INTRINSIC
SAND	386	459	8.85e-38	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.4%

Validation Efficiency

100% (104/104)

Allele List at MGI

Other mutations in this stock

Total: 104 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930519G04Rik	T	C	5: 114,874,280	V86A	probably benign	Het
Abcc3	A	T	11: 94,364,417	I601N	probably damaging	Het
Abl2	T	A	1: 156,620,827		probably null	Het
Adgrf4	C	T	17: 42,666,898	R518Q	possibly damaging	Het
Ahi1	C	T	10: 20,959,996	T76I	probably damaging	Het
Arhgap42	C	T	9: 9,035,600	G247D	probably damaging	Het
Arid2	C	T	15: 96,362,590	L407F	probably damaging	Het
Atp13a1	T	C	8: 69,799,773	F606L	probably benign	Het
Avl9	T	A	6: 56,736,435		probably benign	Het
B3glct	C	T	5: 149,709,380	A65V	probably damaging	Het
Bcorl1	T	C	X: 48,401,917		probably benign	Het
Bdp1	T	C	13: 100,050,988	T1624A	probably benign	Het
Bmp15	A	G	X: 6,316,021	M263T	probably benign	Het
Brd8	T	C	18: 34,614,479	K110E	probably damaging	Het
Cachd1	A	G	4: 100,990,844	D1052G	probably damaging	Het
Capn9	G	A	8: 124,605,711	G430R	possibly damaging	Het
Ccdc113	G	A	8: 95,557,296	E333K	probably benign	Het
Ccnl2	A	T	4: 155,812,481		probably null	Het
Ccr9	T	C	9: 123,779,364	F37S	probably benign	Het
Cdh7	A	T	1: 110,138,159	D721V	probably damaging	Het
Ceacam10	A	T	7: 24,778,372	N104I	probably damaging	Het
Cenpk	T	A	13: 104,236,176		probably benign	Het
Cfi	A	G	3: 129,858,804		probably null	Het
Chd1	T	C	17: 15,742,294	F771S	probably damaging	Het
Chil4	G	A	3: 106,219,455	L4F	probably benign	Het
Cilp	G	A	9: 65,278,090	R489Q	possibly damaging	Het
Cntnap5b	G	A	1: 100,358,725	G402R	probably benign	Het
Coq8b	A	G	7: 27,257,377	E485G	probably damaging	Het
Cse1l	A	G	2: 166,941,492	S733G	probably benign	Het
Dnah5	G	A	15: 28,312,388		probably null	Het
Dnmt3l	T	C	10: 78,052,732	V156A	probably damaging	Het
Duox1	A	T	2: 122,333,062	T792S	probably benign	Het
Duox2	T	C	2: 122,287,108	D915G	probably benign	Het
Efcab5	A	T	11: 77,172,321	M115K	probably benign	Het
Eif2s1	G	A	12: 78,877,185	D139N	probably benign	Het
Erg	A	G	16: 95,361,078	F390L	probably damaging	Het
Fam193b	A	T	13: 55,542,998	S650R	probably damaging	Het
Fbp2	T	A	13: 62,854,061	K113N	possibly damaging	Het
Fnbp4	T	G	2: 90,758,372	S496A	probably damaging	Het
Gab3	C	A	X: 75,000,095	R475L	probably damaging	Het
Gm7534	T	G	4: 134,201,941	N351T	possibly damaging	Het
Gsap	T	C	5: 21,226,839		probably benign	Het
Gucy1a2	C	T	9: 3,582,697	L160F	probably damaging	Het
Hivep1	C	T	13: 42,183,786	A2447V	possibly damaging	Het
Hrasls5	T	C	19: 7,612,638	S10P	possibly damaging	Het
Insc	G	T	7: 114,804,593		probably null	Het
Jph2	A	G	2: 163,339,685	S520P	possibly damaging	Het
Kidins220	T	A	12: 24,987,006		probably benign	Het
Krtap29-1	A	G	11: 99,978,612	S148P	probably damaging	Het
Ltbp2	A	C	12: 84,793,733	C1000G	probably damaging	Het
Map2k3	T	C	11: 60,950,027	F294S	probably damaging	Het
Map4k2	C	A	19: 6,342,738		probably benign	Het
Mboat2	T	C	12: 24,951,443	V281A	probably benign	Het
Mdga2	G	A	12: 66,568,917	R570*	probably null	Het
Mlxipl	A	G	5: 135,107,005	D28G	probably damaging	Het
Morc2b	T	C	17: 33,136,760	I679M	probably benign	Het
Myh4	T	C	11: 67,246,366		probably benign	Het
Nfib	A	C	4: 82,498,615	L61R	probably damaging	Het
Noc2l	C	A	4: 156,241,450	Y227*	probably null	Het
Nrde2	A	G	12: 100,142,232	S367P	probably damaging	Het
Nup93	C	A	8: 94,243,739	P89T	probably damaging	Het
Obsl1	G	A	1: 75,486,756	T1764M	probably benign	Het
Olfr1240	C	T	2: 89,439,583	R232H	probably benign	Het
Olfr1283	A	G	2: 111,369,095	I154M	probably benign	Het
Olfr6	A	T	7: 106,956,287	Y216*	probably null	Het
Olfr714	A	T	7: 107,074,619	K264*	probably null	Het
Olfr749	T	A	14: 50,736,576	E195D	possibly damaging	Het
Olfr824	A	G	10: 130,126,205	I284T	possibly damaging	Het
Oxct1	G	T	15: 4,092,525	A319S	probably null	Het
P2ry10	A	G	X: 107,103,253	S265G	probably benign	Het
Peak1	A	T	9: 56,258,759	N628K	probably damaging	Het
Pkdrej	T	A	15: 85,821,231	Q168L	probably benign	Het
Plec	A	G	15: 76,188,926	M604T	probably benign	Het
Pmfbp1	A	T	8: 109,532,103	N680I	possibly damaging	Het
Pnmal2	T	C	7: 16,945,789	W233R	probably damaging	Het
Pxn	A	G	5: 115,545,667	N186S	probably benign	Het
Rsad1	A	C	11: 94,549,125		probably benign	Het
Runx2	A	G	17: 44,735,342	I112T	probably benign	Het
S1pr2	A	T	9: 20,967,494	L346Q	probably damaging	Het
Skint6	A	G	4: 113,238,132	I110T	probably damaging	Het
Slc36a4	T	A	9: 15,726,980	F234Y	probably damaging	Het
Slitrk2	T	A	X: 66,654,629	V242D	probably damaging	Het
Spryd3	A	C	15: 102,118,181	L352V	probably benign	Het
Ssc4d	A	C	5: 135,970,317	W11G	possibly damaging	Het
Stx17	T	A	4: 48,158,870	D83E	probably damaging	Het
Tlk2	A	T	11: 105,240,440	Q204L	probably benign	Het
Tnfrsf21	A	T	17: 43,037,938	H147L	possibly damaging	Het
Tnrc18	A	T	5: 142,766,087	D1154E	unknown	Het
Trap1	A	G	16: 4,068,336	S86P	probably benign	Het
Trim32	T	A	4: 65,614,776	C523*	probably null	Het
Ttc38	G	T	15: 85,838,788	D146Y	probably damaging	Het
Ttc9	T	A	12: 81,631,796	L131Q	probably damaging	Het
Ttn	T	C	2: 76,726,848		probably benign	Het
Ttn	C	T	2: 76,813,339	G11436R	probably damaging	Het
Ubash3b	G	A	9: 41,043,573	P92S	possibly damaging	Het
Ube4a	T	C	9: 44,948,099	N367S	probably damaging	Het
Ubr4	T	A	4: 139,479,540	H4899Q	possibly damaging	Het
Ufl1	C	T	4: 25,269,036	G265D	possibly damaging	Het
Vmn2r27	T	A	6: 124,224,483	I172F	probably damaging	Het
Vmn2r6	A	T	3: 64,556,098	H438Q	possibly damaging	Het
Vmn2r61	A	G	7: 42,300,001	D615G	probably benign	Het
Wdr24	T	A	17: 25,826,282	D330E	probably damaging	Het
Zbbx	A	T	3: 75,078,412	N444K	probably benign	Het
Zc3h7b	A	T	15: 81,792,328	Q757L	probably damaging	Het

Other mutations in Sp100

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01082:Sp100	APN	1	85670020	missense	possibly damaging	0.48
IGL01998:Sp100	APN	1	85666929	missense	probably benign	0.01
IGL02192:Sp100	APN	1	85708001	missense	probably damaging	0.99
IGL02809:Sp100	APN	1	85681124	missense	probably damaging	0.99
IGL03274:Sp100	APN	1	85707304	intron	probably benign
PIT4458001:Sp100	UTSW	1	85708116	missense	probably benign	0.10
R0115:Sp100	UTSW	1	85650131	splice site	probably benign
R0599:Sp100	UTSW	1	85681110	missense	possibly damaging	0.68
R0620:Sp100	UTSW	1	85659867	splice site	probably null
R0693:Sp100	UTSW	1	85667005	critical splice donor site	probably null
R0709:Sp100	UTSW	1	85694281	missense	probably damaging	0.96
R0744:Sp100	UTSW	1	85699744	missense	probably damaging	0.97
R0836:Sp100	UTSW	1	85699744	missense	probably damaging	0.97
R1175:Sp100	UTSW	1	85701420	missense	possibly damaging	0.83
R1496:Sp100	UTSW	1	85663521	splice site	probably benign
R1749:Sp100	UTSW	1	85699636	missense	possibly damaging	0.95
R2046:Sp100	UTSW	1	85709065	missense	possibly damaging	0.53
R2441:Sp100	UTSW	1	85703489	unclassified	probably benign
R3933:Sp100	UTSW	1	85681109	missense	probably benign	0.29
R4171:Sp100	UTSW	1	85706841	missense	probably benign	0.00
R4762:Sp100	UTSW	1	85701458	makesense	probably null
R4863:Sp100	UTSW	1	85705003	missense	probably benign	0.03
R5156:Sp100	UTSW	1	85673683	missense	probably damaging	1.00
R5273:Sp100	UTSW	1	85709104	missense	possibly damaging	0.86
R5635:Sp100	UTSW	1	85682264	intron	probably benign
R5810:Sp100	UTSW	1	85665285	missense	probably benign	0.12
R5910:Sp100	UTSW	1	85681140	critical splice donor site	probably null
R5931:Sp100	UTSW	1	85679083	missense	probably damaging	1.00
R7466:Sp100	UTSW	1	85707239	missense	possibly damaging	0.93
R7514:Sp100	UTSW	1	85681139	nonsense	probably null
R7647:Sp100	UTSW	1	85692043	missense	possibly damaging	0.91
R7851:Sp100	UTSW	1	85706926	missense	probably benign	0.12
R7908:Sp100	UTSW	1	85708067	missense	possibly damaging	0.51
R8064:Sp100	UTSW	1	85681139	nonsense	probably null
R8094:Sp100	UTSW	1	85697098	missense	possibly damaging	0.95
R8757:Sp100	UTSW	1	85662564	missense	possibly damaging	0.92
R8785:Sp100	UTSW	1	85699751	critical splice donor site	probably benign
R9382:Sp100	UTSW	1	85699615	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GGATCTCCATCCTGACAGAAAAG -3'
(R):5'- TCACTTAGGACCAACTTCATCC -3'

Sequencing Primer
(F):5'- TCTCCATCCTGACAGAAAAGATCATG -3'
(R):5'- CCTGTACTGGGCTTGTGC -3'

Posted On

2014-09-17