Incidental Mutation 'R2069:Bcorl1'
ID227004
Institutional Source Beutler Lab
Gene Symbol Bcorl1
Ensembl Gene ENSMUSG00000036959
Gene NameBCL6 co-repressor-like 1
Synonyms6720425J07Rik
MMRRC Submission 040074-MU
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.426) question?
Stock #R2069 (G1)
Quality Score222
Status Validated
ChromosomeX
Chromosomal Location48341358-48408049 bp(+) (GRCm38)
Type of Mutationsplice site
DNA Base Change (assembly) T to C at 48401917 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000122000 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000037596] [ENSMUST00000136348]
Predicted Effect probably benign
Transcript: ENSMUST00000037596
SMART Domains Protein: ENSMUSP00000039898
Gene: ENSMUSG00000036959

DomainStartEndE-ValueType
low complexity region 205 218 N/A INTRINSIC
low complexity region 237 260 N/A INTRINSIC
low complexity region 268 301 N/A INTRINSIC
low complexity region 333 365 N/A INTRINSIC
low complexity region 368 410 N/A INTRINSIC
low complexity region 521 531 N/A INTRINSIC
low complexity region 1110 1138 N/A INTRINSIC
low complexity region 1248 1263 N/A INTRINSIC
low complexity region 1316 1324 N/A INTRINSIC
low complexity region 1328 1339 N/A INTRINSIC
ANK 1493 1523 3.44e1 SMART
ANK 1527 1556 7.02e-5 SMART
ANK 1560 1589 1.25e-1 SMART
Pfam:PUFD 1663 1780 3.7e-54 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000114972
SMART Domains Protein: ENSMUSP00000110623
Gene: ENSMUSG00000036959

DomainStartEndE-ValueType
low complexity region 191 204 N/A INTRINSIC
low complexity region 223 246 N/A INTRINSIC
low complexity region 254 287 N/A INTRINSIC
low complexity region 319 351 N/A INTRINSIC
low complexity region 354 396 N/A INTRINSIC
low complexity region 507 517 N/A INTRINSIC
low complexity region 1096 1124 N/A INTRINSIC
low complexity region 1234 1249 N/A INTRINSIC
low complexity region 1302 1310 N/A INTRINSIC
low complexity region 1314 1325 N/A INTRINSIC
ANK 1439 1468 7.02e-5 SMART
ANK 1472 1501 1.25e-1 SMART
Pfam:PUFD 1575 1692 1.4e-54 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000136348
SMART Domains Protein: ENSMUSP00000122000
Gene: ENSMUSG00000036959

DomainStartEndE-ValueType
low complexity region 205 218 N/A INTRINSIC
low complexity region 237 260 N/A INTRINSIC
low complexity region 268 301 N/A INTRINSIC
low complexity region 333 365 N/A INTRINSIC
low complexity region 368 410 N/A INTRINSIC
low complexity region 521 531 N/A INTRINSIC
low complexity region 1110 1138 N/A INTRINSIC
low complexity region 1248 1263 N/A INTRINSIC
low complexity region 1316 1324 N/A INTRINSIC
low complexity region 1328 1339 N/A INTRINSIC
ANK 1493 1523 3.44e1 SMART
ANK 1527 1556 7.02e-5 SMART
ANK 1560 1589 1.25e-1 SMART
PDB:4HPM|C 1663 1781 1e-68 PDB
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.4%
Validation Efficiency 100% (104/104)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a transcriptional corepressor that is found tethered to promoter regions by DNA-binding proteins. The encoded protein can interact with several different class II histone deacetylases to repress transcription. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2010]
Allele List at MGI
Other mutations in this stock
Total: 104 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930519G04Rik T C 5: 114,874,280 V86A probably benign Het
Abcc3 A T 11: 94,364,417 I601N probably damaging Het
Abl2 T A 1: 156,620,827 probably null Het
Adgrf4 C T 17: 42,666,898 R518Q possibly damaging Het
Ahi1 C T 10: 20,959,996 T76I probably damaging Het
Arhgap42 C T 9: 9,035,600 G247D probably damaging Het
Arid2 C T 15: 96,362,590 L407F probably damaging Het
Atp13a1 T C 8: 69,799,773 F606L probably benign Het
Avl9 T A 6: 56,736,435 probably benign Het
B3glct C T 5: 149,709,380 A65V probably damaging Het
Bdp1 T C 13: 100,050,988 T1624A probably benign Het
Bmp15 A G X: 6,316,021 M263T probably benign Het
Brd8 T C 18: 34,614,479 K110E probably damaging Het
Cachd1 A G 4: 100,990,844 D1052G probably damaging Het
Capn9 G A 8: 124,605,711 G430R possibly damaging Het
Ccdc113 G A 8: 95,557,296 E333K probably benign Het
Ccnl2 A T 4: 155,812,481 probably null Het
Ccr9 T C 9: 123,779,364 F37S probably benign Het
Cdh7 A T 1: 110,138,159 D721V probably damaging Het
Ceacam10 A T 7: 24,778,372 N104I probably damaging Het
Cenpk T A 13: 104,236,176 probably benign Het
Cfi A G 3: 129,858,804 probably null Het
Chd1 T C 17: 15,742,294 F771S probably damaging Het
Chil4 G A 3: 106,219,455 L4F probably benign Het
Cilp G A 9: 65,278,090 R489Q possibly damaging Het
Cntnap5b G A 1: 100,358,725 G402R probably benign Het
Coq8b A G 7: 27,257,377 E485G probably damaging Het
Cse1l A G 2: 166,941,492 S733G probably benign Het
Dnah5 G A 15: 28,312,388 probably null Het
Dnmt3l T C 10: 78,052,732 V156A probably damaging Het
Duox1 A T 2: 122,333,062 T792S probably benign Het
Duox2 T C 2: 122,287,108 D915G probably benign Het
Efcab5 A T 11: 77,172,321 M115K probably benign Het
Eif2s1 G A 12: 78,877,185 D139N probably benign Het
Erg A G 16: 95,361,078 F390L probably damaging Het
Fam193b A T 13: 55,542,998 S650R probably damaging Het
Fbp2 T A 13: 62,854,061 K113N possibly damaging Het
Fnbp4 T G 2: 90,758,372 S496A probably damaging Het
Gab3 C A X: 75,000,095 R475L probably damaging Het
Gm7534 T G 4: 134,201,941 N351T possibly damaging Het
Gsap T C 5: 21,226,839 probably benign Het
Gucy1a2 C T 9: 3,582,697 L160F probably damaging Het
Hivep1 C T 13: 42,183,786 A2447V possibly damaging Het
Hrasls5 T C 19: 7,612,638 S10P possibly damaging Het
Insc G T 7: 114,804,593 probably null Het
Jph2 A G 2: 163,339,685 S520P possibly damaging Het
Kidins220 T A 12: 24,987,006 probably benign Het
Krtap29-1 A G 11: 99,978,612 S148P probably damaging Het
Ltbp2 A C 12: 84,793,733 C1000G probably damaging Het
Map2k3 T C 11: 60,950,027 F294S probably damaging Het
Map4k2 C A 19: 6,342,738 probably benign Het
Mboat2 T C 12: 24,951,443 V281A probably benign Het
Mdga2 G A 12: 66,568,917 R570* probably null Het
Mlxipl A G 5: 135,107,005 D28G probably damaging Het
Morc2b T C 17: 33,136,760 I679M probably benign Het
Myh4 T C 11: 67,246,366 probably benign Het
Nfib A C 4: 82,498,615 L61R probably damaging Het
Noc2l C A 4: 156,241,450 Y227* probably null Het
Nrde2 A G 12: 100,142,232 S367P probably damaging Het
Nup93 C A 8: 94,243,739 P89T probably damaging Het
Obsl1 G A 1: 75,486,756 T1764M probably benign Het
Olfr1240 C T 2: 89,439,583 R232H probably benign Het
Olfr1283 A G 2: 111,369,095 I154M probably benign Het
Olfr6 A T 7: 106,956,287 Y216* probably null Het
Olfr714 A T 7: 107,074,619 K264* probably null Het
Olfr749 T A 14: 50,736,576 E195D possibly damaging Het
Olfr824 A G 10: 130,126,205 I284T possibly damaging Het
Oxct1 G T 15: 4,092,525 A319S probably null Het
P2ry10 A G X: 107,103,253 S265G probably benign Het
Peak1 A T 9: 56,258,759 N628K probably damaging Het
Pkdrej T A 15: 85,821,231 Q168L probably benign Het
Plec A G 15: 76,188,926 M604T probably benign Het
Pmfbp1 A T 8: 109,532,103 N680I possibly damaging Het
Pnmal2 T C 7: 16,945,789 W233R probably damaging Het
Pxn A G 5: 115,545,667 N186S probably benign Het
Rsad1 A C 11: 94,549,125 probably benign Het
Runx2 A G 17: 44,735,342 I112T probably benign Het
S1pr2 A T 9: 20,967,494 L346Q probably damaging Het
Skint6 A G 4: 113,238,132 I110T probably damaging Het
Slc36a4 T A 9: 15,726,980 F234Y probably damaging Het
Slitrk2 T A X: 66,654,629 V242D probably damaging Het
Sp100 A G 1: 85,681,142 probably null Het
Spryd3 A C 15: 102,118,181 L352V probably benign Het
Ssc4d A C 5: 135,970,317 W11G possibly damaging Het
Stx17 T A 4: 48,158,870 D83E probably damaging Het
Tlk2 A T 11: 105,240,440 Q204L probably benign Het
Tnfrsf21 A T 17: 43,037,938 H147L possibly damaging Het
Tnrc18 A T 5: 142,766,087 D1154E unknown Het
Trap1 A G 16: 4,068,336 S86P probably benign Het
Trim32 T A 4: 65,614,776 C523* probably null Het
Ttc38 G T 15: 85,838,788 D146Y probably damaging Het
Ttc9 T A 12: 81,631,796 L131Q probably damaging Het
Ttn T C 2: 76,726,848 probably benign Het
Ttn C T 2: 76,813,339 G11436R probably damaging Het
Ubash3b G A 9: 41,043,573 P92S possibly damaging Het
Ube4a T C 9: 44,948,099 N367S probably damaging Het
Ubr4 T A 4: 139,479,540 H4899Q possibly damaging Het
Ufl1 C T 4: 25,269,036 G265D possibly damaging Het
Vmn2r27 T A 6: 124,224,483 I172F probably damaging Het
Vmn2r6 A T 3: 64,556,098 H438Q possibly damaging Het
Vmn2r61 A G 7: 42,300,001 D615G probably benign Het
Wdr24 T A 17: 25,826,282 D330E probably damaging Het
Zbbx A T 3: 75,078,412 N444K probably benign Het
Zc3h7b A T 15: 81,792,328 Q757L probably damaging Het
Other mutations in Bcorl1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00488:Bcorl1 APN X 48406042 missense probably damaging 1.00
IGL00491:Bcorl1 APN X 48406042 missense probably damaging 1.00
IGL00502:Bcorl1 APN X 48406042 missense probably damaging 1.00
IGL00504:Bcorl1 APN X 48406042 missense probably damaging 1.00
IGL00803:Bcorl1 APN X 48369552 missense probably damaging 1.00
IGL02227:Bcorl1 APN X 48369360 missense probably benign 0.04
R0696:Bcorl1 UTSW X 48406018 missense probably damaging 1.00
R1514:Bcorl1 UTSW X 48405944 missense probably damaging 1.00
R2102:Bcorl1 UTSW X 48369204 missense probably benign 0.00
R2418:Bcorl1 UTSW X 48370541 missense probably damaging 1.00
R2419:Bcorl1 UTSW X 48370541 missense probably damaging 1.00
R3404:Bcorl1 UTSW X 48371007 missense probably benign 0.02
R3405:Bcorl1 UTSW X 48371007 missense probably benign 0.02
Predicted Primers PCR Primer
(F):5'- TGTGCTTGTAGCTGATGCCC -3'
(R):5'- GGCCTGGAAATGCATCAAGTTG -3'

Sequencing Primer
(F):5'- GTAGCTGATGCCCCATGTTC -3'
(R):5'- CCTGGAAATGCATCAAGTTGATAGC -3'
Posted On2014-09-17