Mutagenetix > Incidental Mutations

Incidental Mutation 'R2073:Pak6'

227304

Institutional Source

Beutler Lab

Gene Symbol

Pak6

Ensembl Gene

ENSMUSG00000074923

Gene Name

p21 (RAC1) activated kinase 6

Synonyms

MMRRC Submission

040078-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2073 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

118663303-118698020 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 118688851 bp

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Threonine at position 17 (N17T)

Ref Sequence

ENSEMBL: ENSMUSP00000106477 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000099557] [ENSMUST00000110853]

Predicted Effect

probably damaging
Transcript: ENSMUST00000099557
AA Change: N17T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000097153
Gene: ENSMUSG00000074923
AA Change: N17T

Domain	Start	End	E-Value	Type
PBD	12	47	4.47e-11	SMART
S_TKc	408	659	2.38e-89	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000110853
AA Change: N17T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000106477
Gene: ENSMUSG00000074923
AA Change: N17T

Domain	Start	End	E-Value	Type
PBD	12	47	4.47e-11	SMART
S_TKc	408	659	2.38e-89	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132577

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of p21-stimulated serine/threonine protein kinases, which contain an amino-terminal Cdc42/Rac interactive binding (CRIB) domain and a carboxyl-terminal kinase domain. These kinases function in a number of cellular processes, including cytoskeleton rearrangement, apoptosis, and the mitogen-activated protein (MAP) kinase signaling pathway. The protein encoded by this gene interacts with androgen receptor (AR) and translocates to the nucleus, where it is involved in transcriptional regulation. Changes in expression of this gene have been linked to prostate cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]
PHENOTYPE: Mice homozygous for a null allele do not exhibit any abnormal phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110017D15Rik	A	G	4: 41,507,519		probably null	Het
2310057M21Rik	T	C	7: 131,357,513	R153G	probably benign	Het
4930430A15Rik	T	C	2: 111,200,418	E382G	probably damaging	Het
5730596B20Rik	C	A	6: 52,178,982	Y9*	probably null	Het
9130011E15Rik	A	T	19: 45,965,381	I188K	probably damaging	Het
Aco1	G	A	4: 40,183,605	G508S	probably damaging	Het
Acot3	A	G	12: 84,053,456	H2R	possibly damaging	Het
Adamts13	T	A	2: 27,006,314	C1240S	probably damaging	Het
Adra1b	T	C	11: 43,835,871	N73S	probably damaging	Het
Aebp2	G	A	6: 140,633,694	S219N	probably benign	Het
Akap8l	C	T	17: 32,332,483	R511H	probably damaging	Het
Ank	T	C	15: 27,565,022	S270P	probably benign	Het
Ankle1	G	A	8: 71,409,329	R492H	possibly damaging	Het
Ankub1	G	A	3: 57,692,292	H19Y	possibly damaging	Het
Anln	C	A	9: 22,333,168	W1083L	probably benign	Het
Apaf1	G	T	10: 91,031,694	S763*	probably null	Het
Apba3	A	G	10: 81,269,294	T134A	probably benign	Het
Bod1l	C	T	5: 41,819,189	S1594N	probably benign	Het
C7	T	C	15: 4,990,428	M746V	probably benign	Het
Cdkn2a	T	A	4: 89,294,493	I11F	possibly damaging	Het
Cideb	T	C	14: 55,755,160	M100V	possibly damaging	Het
Cntnap5c	T	C	17: 58,305,552	L862P	possibly damaging	Het
Coch	A	T	12: 51,602,689	D261V	probably benign	Het
Cyp2ab1	A	G	16: 20,313,889	F220L	possibly damaging	Het
Ddx10	A	T	9: 53,240,505	D73E	probably benign	Het
Dgkg	A	G	16: 22,565,317	F462S	probably damaging	Het
Dlgap3	C	T	4: 127,195,366	H252Y	probably damaging	Het
Dmd	G	C	X: 84,312,483	A2257P	probably benign	Het
Dtnb	A	G	12: 3,781,273	T658A	probably benign	Het
Duox2	T	A	2: 122,295,158	S323C	probably damaging	Het
Dync1h1	T	A	12: 110,614,592	I251N	probably damaging	Het
Eml5	A	G	12: 98,802,446	S1457P	probably damaging	Het
Fam114a1	T	A	5: 64,995,904		probably null	Het
Fcho1	A	T	8: 71,710,489	L632Q	probably damaging	Het
Gm12695	T	C	4: 96,723,945	Y527C	possibly damaging	Het
Gm16223	T	C	5: 42,214,599	C111R	unknown	Het
H2-Q4	T	A	17: 35,380,402	S154T	possibly damaging	Het
Hhat	A	G	1: 192,727,379	F125L	possibly damaging	Het
Ier5l	T	A	2: 30,473,056	D319V	probably damaging	Het
Kif5a	T	C	10: 127,245,369	D232G	probably damaging	Het
M1ap	A	G	6: 82,981,882	I165V	probably benign	Het
Map2k4	A	C	11: 65,693,456	F334V	probably damaging	Het
Mmp19	G	A	10: 128,794,979	R156H	probably damaging	Het
Mpped2	T	A	2: 106,744,802	Y77*	probably null	Het
Nhs	T	A	X: 161,842,721	H544L	probably damaging	Het
Nr4a1	C	A	15: 101,274,067	H541N	probably damaging	Het
Olfr1247	A	G	2: 89,609,478	V208A	probably benign	Het
Olfr1484	A	T	19: 13,585,601	Q99L	probably damaging	Het
Pcnt	T	A	10: 76,380,380	T2225S	possibly damaging	Het
Pdzd2	A	G	15: 12,385,819	L955P	probably damaging	Het
Phf21a	A	G	2: 92,348,036	D357G	probably damaging	Het
Pih1d3	A	G	1: 31,222,996	S20G	probably benign	Het
Pkhd1l1	G	T	15: 44,558,639	A3102S	probably damaging	Het
Plch2	A	T	4: 154,989,909	L754Q	probably damaging	Het
Plekhd1	A	G	12: 80,721,292	N335D	probably benign	Het
Pole	C	A	5: 110,325,551	T1737N	probably damaging	Het
Pramel6	G	A	2: 87,508,744	S96N	probably damaging	Het
Prdm14	A	C	1: 13,125,730	Y36D	possibly damaging	Het
Psg27	T	C	7: 18,560,417	D355G	probably damaging	Het
Rfc1	A	T	5: 65,301,939	D225E	probably damaging	Het
Sec16a	A	G	2: 26,440,239	I588T	probably damaging	Het
Setd6	G	A	8: 95,716,788	V60M	probably damaging	Het
Sgk3	A	G	1: 9,891,424	I432V	probably benign	Het
Six2	A	G	17: 85,687,505	S150P	probably damaging	Het
Slc1a6	T	C	10: 78,800,130	V343A	possibly damaging	Het
Slc43a3	T	C	2: 84,944,612		probably null	Het
Smc3	A	G	19: 53,631,533	D620G	probably benign	Het
Smg6	C	G	11: 74,930,294	P464A	probably damaging	Het
Sox11	T	C	12: 27,342,279	T44A	possibly damaging	Het
Spata22	A	G	11: 73,336,226	R89G	possibly damaging	Het
Stk3	T	C	15: 34,959,049	M256V	possibly damaging	Het
Syne2	A	G	12: 76,015,579	D4226G	possibly damaging	Het
Tecpr2	T	C	12: 110,968,429	S1370P	possibly damaging	Het
Tek	A	G	4: 94,827,729	I463V	probably benign	Het
Trib1	T	A	15: 59,654,340	I253N	probably damaging	Het
Triobp	G	T	15: 78,973,895	G1232V	probably damaging	Het
Trpm6	G	A	19: 18,876,042	V1809M	probably damaging	Het
Tsc22d4	A	G	5: 137,762,487	K57E	possibly damaging	Het
Vmn2r109	T	A	17: 20,564,712	K15N	probably benign	Het
Wdr78	G	A	4: 103,050,193	T632M	probably damaging	Het
Wnt9a	A	G	11: 59,331,229	N318D	probably damaging	Het
Wwp1	A	G	4: 19,662,181	V138A	possibly damaging	Het
Zfp37	A	T	4: 62,191,708	M411K	probably damaging	Het
Zfp715	T	A	7: 43,311,120	T16S	probably benign	Het
Zfp932	A	G	5: 110,009,818	T461A	possibly damaging	Het
Zscan29	A	T	2: 121,160,855	C817*	probably null	Het

Other mutations in Pak6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00229:Pak6	APN	2	118689845	missense	possibly damaging	0.58
IGL00979:Pak6	APN	2	118696482	missense	probably damaging	1.00
IGL01577:Pak6	APN	2	118693648	missense	probably benign	0.00
IGL01928:Pak6	APN	2	118689864	missense	probably damaging	1.00
IGL01951:Pak6	APN	2	118693260	missense	probably benign
IGL02387:Pak6	APN	2	118693233	missense	probably benign
IGL03302:Pak6	APN	2	118693303	missense	probably benign
bedamned	UTSW	2	118694007	splice site	probably benign
bequeathed	UTSW	2	118693522	missense	probably damaging	0.96
R0126:Pak6	UTSW	2	118690332	missense	possibly damaging	0.86
R0883:Pak6	UTSW	2	118693687	missense	probably damaging	1.00
R1128:Pak6	UTSW	2	118696509	missense	probably benign	0.00
R2508:Pak6	UTSW	2	118694569	nonsense	probably null
R2920:Pak6	UTSW	2	118694007	splice site	probably benign
R3118:Pak6	UTSW	2	118689741	missense	probably damaging	1.00
R3689:Pak6	UTSW	2	118693440	nonsense	probably null
R3762:Pak6	UTSW	2	118696477	missense	probably damaging	0.99
R4589:Pak6	UTSW	2	118696540	missense	probably damaging	1.00
R4976:Pak6	UTSW	2	118694548	missense	probably damaging	1.00
R5119:Pak6	UTSW	2	118694548	missense	probably damaging	1.00
R5206:Pak6	UTSW	2	118693303	missense	probably benign
R5683:Pak6	UTSW	2	118693912	missense	probably damaging	1.00
R7232:Pak6	UTSW	2	118693522	missense	probably damaging	0.96
R7236:Pak6	UTSW	2	118693428	missense	probably benign	0.26
R7292:Pak6	UTSW	2	118693591	missense	possibly damaging	0.95
R7623:Pak6	UTSW	2	118694587	missense	probably damaging	1.00
R7823:Pak6	UTSW	2	118695312	missense	probably benign	0.02
R8190:Pak6	UTSW	2	118690097	nonsense	probably null
R8374:Pak6	UTSW	2	118693996	missense	probably benign	0.02
R8515:Pak6	UTSW	2	118689997	missense	probably benign	0.10

Predicted Primers

PCR Primer
(F):5'- GAAAAGCCCTTGGGCTAGAG -3'
(R):5'- GTCTCACAGACAGCTTCCTG -3'

Sequencing Primer
(F):5'- GTAGTTATGCTAAGGGAGATCCACAC -3'
(R):5'- TGAACGTGGCTGCAAGC -3'

Posted On

2014-09-17