Mutagenetix > Incidental Mutations

Incidental Mutation 'R2073:Tsc22d4'

227326

Institutional Source

Beutler Lab

Gene Symbol

Tsc22d4

Ensembl Gene

ENSMUSG00000029723

Gene Name

TSC22 domain family, member 4

Synonyms

0610009M14Rik, 1700023B23Rik, Thg-1pit

MMRRC Submission

040078-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2073 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

137745730-137768450 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 137762487 bp

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 57 (K57E)

Ref Sequence

ENSEMBL: ENSMUSP00000106611 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031738] [ENSMUST00000100539] [ENSMUST00000100540] [ENSMUST00000110983] [ENSMUST00000110985] [ENSMUST00000141733]

Predicted Effect

probably benign
Transcript: ENSMUST00000031738
AA Change: K57E

PolyPhen 2 Score 0.226 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000031738
Gene: ENSMUSG00000029723
AA Change: K57E

Domain	Start	End	E-Value	Type
low complexity region	89	104	N/A	INTRINSIC
low complexity region	167	184	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000100539

SMART Domains

Protein: ENSMUSP00000098107
Gene: ENSMUSG00000029723

Domain	Start	End	E-Value	Type
low complexity region	31	61	N/A	INTRINSIC
low complexity region	111	123	N/A	INTRINSIC
low complexity region	190	199	N/A	INTRINSIC
low complexity region	277	291	N/A	INTRINSIC
low complexity region	292	311	N/A	INTRINSIC
Pfam:TSC22	318	377	5.9e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000100540
AA Change: K356E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000098108
Gene: ENSMUSG00000029723
AA Change: K356E

Domain	Start	End	E-Value	Type
low complexity region	31	61	N/A	INTRINSIC
low complexity region	111	123	N/A	INTRINSIC
low complexity region	190	199	N/A	INTRINSIC
low complexity region	277	291	N/A	INTRINSIC
low complexity region	292	311	N/A	INTRINSIC
Pfam:DUF4703	319	509	4.5e-82	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110983
AA Change: K57E

PolyPhen 2 Score 0.454 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000106611
Gene: ENSMUSG00000029723
AA Change: K57E

Domain	Start	End	E-Value	Type
Pfam:DUF4703	20	136	1.6e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000110985

SMART Domains

Protein: ENSMUSP00000106613
Gene: ENSMUSG00000029723

Domain	Start	End	E-Value	Type
Pfam:TSC22	99	158	9.1e-33	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129399

Predicted Effect

probably benign
Transcript: ENSMUST00000141733

SMART Domains

Protein: ENSMUSP00000120835
Gene: ENSMUSG00000029723

Domain	Start	End	E-Value	Type
Pfam:TSC22	27	82	6.6e-32	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] TSC22D4 is a member of the TSC22 domain family of leucine zipper transcriptional regulators (see TSC22D3; MIM 300506) (Kester et al., 1999 [PubMed 10488076]; Fiorenza et al., 2001 [PubMed 11707329]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110017D15Rik	A	G	4: 41,507,519		probably null	Het
2310057M21Rik	T	C	7: 131,357,513	R153G	probably benign	Het
4930430A15Rik	T	C	2: 111,200,418	E382G	probably damaging	Het
5730596B20Rik	C	A	6: 52,178,982	Y9*	probably null	Het
9130011E15Rik	A	T	19: 45,965,381	I188K	probably damaging	Het
Aco1	G	A	4: 40,183,605	G508S	probably damaging	Het
Acot3	A	G	12: 84,053,456	H2R	possibly damaging	Het
Adamts13	T	A	2: 27,006,314	C1240S	probably damaging	Het
Adra1b	T	C	11: 43,835,871	N73S	probably damaging	Het
Aebp2	G	A	6: 140,633,694	S219N	probably benign	Het
Akap8l	C	T	17: 32,332,483	R511H	probably damaging	Het
Ank	T	C	15: 27,565,022	S270P	probably benign	Het
Ankle1	G	A	8: 71,409,329	R492H	possibly damaging	Het
Ankub1	G	A	3: 57,692,292	H19Y	possibly damaging	Het
Anln	C	A	9: 22,333,168	W1083L	probably benign	Het
Apaf1	G	T	10: 91,031,694	S763*	probably null	Het
Apba3	A	G	10: 81,269,294	T134A	probably benign	Het
Bod1l	C	T	5: 41,819,189	S1594N	probably benign	Het
C7	T	C	15: 4,990,428	M746V	probably benign	Het
Cdkn2a	T	A	4: 89,294,493	I11F	possibly damaging	Het
Cideb	T	C	14: 55,755,160	M100V	possibly damaging	Het
Cntnap5c	T	C	17: 58,305,552	L862P	possibly damaging	Het
Coch	A	T	12: 51,602,689	D261V	probably benign	Het
Cyp2ab1	A	G	16: 20,313,889	F220L	possibly damaging	Het
Ddx10	A	T	9: 53,240,505	D73E	probably benign	Het
Dgkg	A	G	16: 22,565,317	F462S	probably damaging	Het
Dlgap3	C	T	4: 127,195,366	H252Y	probably damaging	Het
Dmd	G	C	X: 84,312,483	A2257P	probably benign	Het
Dtnb	A	G	12: 3,781,273	T658A	probably benign	Het
Duox2	T	A	2: 122,295,158	S323C	probably damaging	Het
Dync1h1	T	A	12: 110,614,592	I251N	probably damaging	Het
Eml5	A	G	12: 98,802,446	S1457P	probably damaging	Het
Fam114a1	T	A	5: 64,995,904		probably null	Het
Fcho1	A	T	8: 71,710,489	L632Q	probably damaging	Het
Gm12695	T	C	4: 96,723,945	Y527C	possibly damaging	Het
Gm16223	T	C	5: 42,214,599	C111R	unknown	Het
H2-Q4	T	A	17: 35,380,402	S154T	possibly damaging	Het
Hhat	A	G	1: 192,727,379	F125L	possibly damaging	Het
Ier5l	T	A	2: 30,473,056	D319V	probably damaging	Het
Kif5a	T	C	10: 127,245,369	D232G	probably damaging	Het
M1ap	A	G	6: 82,981,882	I165V	probably benign	Het
Map2k4	A	C	11: 65,693,456	F334V	probably damaging	Het
Mmp19	G	A	10: 128,794,979	R156H	probably damaging	Het
Mpped2	T	A	2: 106,744,802	Y77*	probably null	Het
Nhs	T	A	X: 161,842,721	H544L	probably damaging	Het
Nr4a1	C	A	15: 101,274,067	H541N	probably damaging	Het
Olfr1247	A	G	2: 89,609,478	V208A	probably benign	Het
Olfr1484	A	T	19: 13,585,601	Q99L	probably damaging	Het
Pak6	A	C	2: 118,688,851	N17T	probably damaging	Het
Pcnt	T	A	10: 76,380,380	T2225S	possibly damaging	Het
Pdzd2	A	G	15: 12,385,819	L955P	probably damaging	Het
Phf21a	A	G	2: 92,348,036	D357G	probably damaging	Het
Pih1d3	A	G	1: 31,222,996	S20G	probably benign	Het
Pkhd1l1	G	T	15: 44,558,639	A3102S	probably damaging	Het
Plch2	A	T	4: 154,989,909	L754Q	probably damaging	Het
Plekhd1	A	G	12: 80,721,292	N335D	probably benign	Het
Pole	C	A	5: 110,325,551	T1737N	probably damaging	Het
Pramel6	G	A	2: 87,508,744	S96N	probably damaging	Het
Prdm14	A	C	1: 13,125,730	Y36D	possibly damaging	Het
Psg27	T	C	7: 18,560,417	D355G	probably damaging	Het
Rfc1	A	T	5: 65,301,939	D225E	probably damaging	Het
Sec16a	A	G	2: 26,440,239	I588T	probably damaging	Het
Setd6	G	A	8: 95,716,788	V60M	probably damaging	Het
Sgk3	A	G	1: 9,891,424	I432V	probably benign	Het
Six2	A	G	17: 85,687,505	S150P	probably damaging	Het
Slc1a6	T	C	10: 78,800,130	V343A	possibly damaging	Het
Slc43a3	T	C	2: 84,944,612		probably null	Het
Smc3	A	G	19: 53,631,533	D620G	probably benign	Het
Smg6	C	G	11: 74,930,294	P464A	probably damaging	Het
Sox11	T	C	12: 27,342,279	T44A	possibly damaging	Het
Spata22	A	G	11: 73,336,226	R89G	possibly damaging	Het
Stk3	T	C	15: 34,959,049	M256V	possibly damaging	Het
Syne2	A	G	12: 76,015,579	D4226G	possibly damaging	Het
Tecpr2	T	C	12: 110,968,429	S1370P	possibly damaging	Het
Tek	A	G	4: 94,827,729	I463V	probably benign	Het
Trib1	T	A	15: 59,654,340	I253N	probably damaging	Het
Triobp	G	T	15: 78,973,895	G1232V	probably damaging	Het
Trpm6	G	A	19: 18,876,042	V1809M	probably damaging	Het
Vmn2r109	T	A	17: 20,564,712	K15N	probably benign	Het
Wdr78	G	A	4: 103,050,193	T632M	probably damaging	Het
Wnt9a	A	G	11: 59,331,229	N318D	probably damaging	Het
Wwp1	A	G	4: 19,662,181	V138A	possibly damaging	Het
Zfp37	A	T	4: 62,191,708	M411K	probably damaging	Het
Zfp715	T	A	7: 43,311,120	T16S	probably benign	Het
Zfp932	A	G	5: 110,009,818	T461A	possibly damaging	Het
Zscan29	A	T	2: 121,160,855	C817*	probably null	Het

Other mutations in Tsc22d4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
mastodon	UTSW	5	137751370	critical splice donor site	probably null
R0103:Tsc22d4	UTSW	5	137747116	start codon destroyed	possibly damaging	0.79
R0570:Tsc22d4	UTSW	5	137762419	missense	possibly damaging	0.85
R0600:Tsc22d4	UTSW	5	137762655	missense	probably damaging	0.97
R0658:Tsc22d4	UTSW	5	137768021	missense	probably benign
R3772:Tsc22d4	UTSW	5	137759233	missense	possibly damaging	0.86
R4012:Tsc22d4	UTSW	5	137758328	missense	probably benign	0.02
R4232:Tsc22d4	UTSW	5	137751370	critical splice donor site	probably null
R5378:Tsc22d4	UTSW	5	137762464	missense	probably damaging	0.99
R5394:Tsc22d4	UTSW	5	137758774	intron	probably benign
R5677:Tsc22d4	UTSW	5	137747142	missense	probably damaging	1.00
R5765:Tsc22d4	UTSW	5	137758543	missense	probably benign	0.04
R6184:Tsc22d4	UTSW	5	137759089	missense	probably damaging	0.99
R6263:Tsc22d4	UTSW	5	137768179	missense	possibly damaging	0.85
R6700:Tsc22d4	UTSW	5	137758523	missense	probably benign	0.04
R6821:Tsc22d4	UTSW	5	137762644	missense	possibly damaging	0.92
R6877:Tsc22d4	UTSW	5	137762593	missense	possibly damaging	0.85
R7354:Tsc22d4	UTSW	5	137768109	missense	probably benign	0.12
R7376:Tsc22d4	UTSW	5	137758152	missense	unknown
R7499:Tsc22d4	UTSW	5	137747723	missense	probably benign	0.19
R7731:Tsc22d4	UTSW	5	137758694	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- ACATCGATGTCTTTACTGTGGG -3'
(R):5'- CGGACTGTAGCATGGAGAAC -3'

Sequencing Primer
(F):5'- CACAGACAACTTTTGGGAATCAG -3'
(R):5'- CATGAACATAGAGACTGAGTGAAC -3'

Posted On

2014-09-17