Mutagenetix > Incidental Mutation

Incidental Mutation 'R2075:Vmn1r199'

227558

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r199

Ensembl Gene

ENSMUSG00000069292

Gene Name

vomeronasal 1 receptor 199

Synonyms

V1rh4

MMRRC Submission

040080-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R2075 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

22566708-22567811 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 22567435 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 243 (Y243F)

Ref Sequence

ENSEMBL: ENSMUSP00000153918 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000091732] [ENSMUST00000227685] [ENSMUST00000227689] [ENSMUST00000227846]

AlphaFold

Q8R280

Predicted Effect

probably damaging
Transcript: ENSMUST00000091732
AA Change: Y243F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000089326
Gene: ENSMUSG00000069292
AA Change: Y243F

Domain	Start	End	E-Value	Type
low complexity region	26	37	N/A	INTRINSIC
Pfam:TAS2R	43	338	3.3e-7	PFAM
Pfam:V1R	75	340	1.6e-33	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000120663

Predicted Effect

probably damaging
Transcript: ENSMUST00000227685
AA Change: Y243F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000227689
AA Change: Y200F

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

Predicted Effect

probably damaging
Transcript: ENSMUST00000227846
AA Change: Y200F

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	T	C	11: 9,472,382 (GRCm39)	F4263L	probably damaging	Het
Aebp2	G	A	6: 140,579,420 (GRCm39)	S219N	probably benign	Het
Anln	C	A	9: 22,244,464 (GRCm39)	W1083L	probably benign	Het
Atic	T	A	1: 71,615,286 (GRCm39)	D438E	probably benign	Het
Bahcc1	G	A	11: 120,162,515 (GRCm39)	C271Y	probably damaging	Het
Btbd17	A	T	11: 114,682,778 (GRCm39)		probably null	Het
Ccdc122	T	C	14: 77,306,391 (GRCm39)		probably null	Het
Ccdc149	A	G	5: 52,596,510 (GRCm39)	L34P	probably damaging	Het
Cd22	C	G	7: 30,569,123 (GRCm39)	C637S	probably damaging	Het
Ces1a	T	A	8: 93,774,703 (GRCm39)	N12Y	probably benign	Het
Chmp1a	A	T	8: 123,934,761 (GRCm39)	M65K	probably damaging	Het
Clec16a	G	A	16: 10,559,480 (GRCm39)	A918T	probably benign	Het
Clec2m	C	T	6: 129,303,666 (GRCm39)	E100K	probably benign	Het
Cnot1	G	T	8: 96,466,461 (GRCm39)	T1592K	possibly damaging	Het
Ddx10	A	T	9: 53,151,805 (GRCm39)	D73E	probably benign	Het
Dhx32	T	C	7: 133,323,021 (GRCm39)	N731S	probably benign	Het
Dmd	G	C	X: 83,356,089 (GRCm39)	A2257P	probably benign	Het
Dna2	A	G	10: 62,805,601 (GRCm39)	Q946R	probably benign	Het
Dnai4	G	A	4: 102,907,390 (GRCm39)	T632M	probably damaging	Het
Duox2	T	A	2: 122,125,639 (GRCm39)	S323C	probably damaging	Het
Esr2	A	G	12: 76,212,221 (GRCm39)		probably null	Het
Fbxo9	G	T	9: 77,991,798 (GRCm39)	H397N	possibly damaging	Het
Fsip2	T	A	2: 82,818,923 (GRCm39)	N4885K	possibly damaging	Het
Gm12695	T	C	4: 96,612,182 (GRCm39)	Y527C	possibly damaging	Het
Hivep1	A	G	13: 42,309,794 (GRCm39)	D678G	probably damaging	Het
Hmcn1	T	A	1: 150,453,074 (GRCm39)	I5414F	possibly damaging	Het
Hspb2	T	C	9: 50,662,646 (GRCm39)	Y67C	probably benign	Het
Kbtbd8	T	A	6: 95,103,664 (GRCm39)	C438S	possibly damaging	Het
Kif5a	T	C	10: 127,081,238 (GRCm39)	D232G	probably damaging	Het
Ky	A	G	9: 102,419,945 (GRCm39)	S651G	probably damaging	Het
Lgals12	T	C	19: 7,576,210 (GRCm39)	D238G	possibly damaging	Het
Lpcat3	T	A	6: 124,680,066 (GRCm39)	Y380N	probably damaging	Het
Mdn1	A	G	4: 32,716,058 (GRCm39)	H2080R	probably benign	Het
Mex3c	C	T	18: 73,722,840 (GRCm39)	S311L	probably benign	Het
Mlh3	A	T	12: 85,315,915 (GRCm39)	Y90*	probably null	Het
Mpped2	T	A	2: 106,575,147 (GRCm39)	Y77*	probably null	Het
Myo5a	A	T	9: 75,097,200 (GRCm39)	T49S	probably benign	Het
Nsd1	T	C	13: 55,458,313 (GRCm39)	V2142A	possibly damaging	Het
Or4a74	A	G	2: 89,439,822 (GRCm39)	V208A	probably benign	Het
Or51b17	T	A	7: 103,542,127 (GRCm39)	I272F	probably damaging	Het
Or51i2	T	A	7: 103,689,180 (GRCm39)	M59K	probably damaging	Het
Or5ac19	T	C	16: 59,089,274 (GRCm39)	Y252C	possibly damaging	Het
Pdgfra	T	C	5: 75,348,609 (GRCm39)	I883T	probably damaging	Het
Pdzd2	A	G	15: 12,385,905 (GRCm39)	L955P	probably damaging	Het
Phf24	A	G	4: 42,939,507 (GRCm39)	Y333C	possibly damaging	Het
Phlpp2	T	C	8: 110,655,124 (GRCm39)	S605P	possibly damaging	Het
Piezo2	C	T	18: 63,214,805 (GRCm39)	E1263K	probably damaging	Het
Pitrm1	A	G	13: 6,605,419 (GRCm39)	T149A	probably damaging	Het
Pkhd1l1	G	T	15: 44,422,035 (GRCm39)	A3102S	probably damaging	Het
Plch2	A	T	4: 155,074,366 (GRCm39)	L754Q	probably damaging	Het
Polr2c	A	G	8: 95,590,195 (GRCm39)	I267V	probably benign	Het
Potefam1	T	C	2: 111,030,763 (GRCm39)	E382G	probably damaging	Het
Prss8	C	A	7: 127,526,266 (GRCm39)	R148L	possibly damaging	Het
Ptpn2	T	A	18: 67,814,545 (GRCm39)	T155S	probably damaging	Het
Ptprn2	G	A	12: 117,211,337 (GRCm39)	V839I	probably benign	Het
Sbp	A	G	17: 24,164,132 (GRCm39)		probably null	Het
Sec16a	A	G	2: 26,330,251 (GRCm39)	I588T	probably damaging	Het
Six2	A	G	17: 85,994,933 (GRCm39)	S150P	probably damaging	Het
Slc5a5	C	T	8: 71,345,083 (GRCm39)	G75R	possibly damaging	Het
Slc6a20b	T	A	9: 123,424,099 (GRCm39)	T623S	probably benign	Het
Sqle	T	A	15: 59,195,750 (GRCm39)	V342E	probably damaging	Het
Stk3	T	C	15: 34,959,195 (GRCm39)	M256V	possibly damaging	Het
Tek	A	G	4: 94,715,966 (GRCm39)	I463V	probably benign	Het
Tex10	C	T	4: 48,456,800 (GRCm39)	R637Q	probably benign	Het
Tnc	G	A	4: 63,913,903 (GRCm39)	T1303M	possibly damaging	Het
Traf6	A	C	2: 101,527,398 (GRCm39)	I383L	probably benign	Het
Tubb3	C	T	8: 124,148,009 (GRCm39)	A314V	probably damaging	Het
Vmn2r111	A	C	17: 22,778,043 (GRCm39)	N545K	probably damaging	Het
Vmn2r27	T	A	6: 124,177,510 (GRCm39)	Q498L	possibly damaging	Het
Vstm4	A	T	14: 32,639,811 (GRCm39)	S229C	probably damaging	Het
Wdr12	C	T	1: 60,130,222 (GRCm39)	R63Q	possibly damaging	Het
Wrn	T	A	8: 33,812,357 (GRCm39)	I187L	probably benign	Het
Xirp2	A	T	2: 67,340,545 (GRCm39)	I929L	probably benign	Het
Ywhae	T	A	11: 75,655,486 (GRCm39)	D252E	probably benign	Het
Zfp944	A	T	17: 22,558,178 (GRCm39)	C356*	probably null	Het

Other mutations in Vmn1r199

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00930:Vmn1r199	APN	13	22,567,029 (GRCm39)	missense	possibly damaging	0.64
IGL01959:Vmn1r199	APN	13	22,567,290 (GRCm39)	missense	probably benign	0.07
IGL02270:Vmn1r199	APN	13	22,567,176 (GRCm39)	missense	probably damaging	1.00
IGL02687:Vmn1r199	APN	13	22,566,961 (GRCm39)	missense	possibly damaging	0.91
IGL03143:Vmn1r199	APN	13	22,567,299 (GRCm39)	missense	probably damaging	1.00
R0528:Vmn1r199	UTSW	13	22,566,736 (GRCm39)	missense	probably benign
R1411:Vmn1r199	UTSW	13	22,567,671 (GRCm39)	missense	probably benign	0.01
R5057:Vmn1r199	UTSW	13	22,567,575 (GRCm39)	missense	possibly damaging	0.93
R5824:Vmn1r199	UTSW	13	22,567,748 (GRCm39)	missense	probably benign
R5977:Vmn1r199	UTSW	13	22,567,416 (GRCm39)	missense	probably benign	0.08
R6019:Vmn1r199	UTSW	13	22,566,769 (GRCm39)	missense	possibly damaging	0.85
R6419:Vmn1r199	UTSW	13	22,567,777 (GRCm39)	missense	possibly damaging	0.66
R7624:Vmn1r199	UTSW	13	22,566,906 (GRCm39)	missense	probably benign	0.00
R7637:Vmn1r199	UTSW	13	22,566,845 (GRCm39)	missense	probably benign	0.05
R8505:Vmn1r199	UTSW	13	22,567,317 (GRCm39)	missense	probably benign	0.01
R8692:Vmn1r199	UTSW	13	22,567,809 (GRCm39)	makesense	probably null
R8735:Vmn1r199	UTSW	13	22,567,537 (GRCm39)	missense	probably damaging	1.00
R8791:Vmn1r199	UTSW	13	22,567,687 (GRCm39)	missense	probably damaging	1.00
R9054:Vmn1r199	UTSW	13	22,567,724 (GRCm39)	missense	possibly damaging	0.95
R9258:Vmn1r199	UTSW	13	22,566,822 (GRCm39)	missense	possibly damaging	0.53
R9586:Vmn1r199	UTSW	13	22,567,716 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TCAGGCCAAAGTCTGCATGG -3'
(R):5'- CAAGGGTCAGAAGTTCTCGAGG -3'

Sequencing Primer
(F):5'- TGGCACATCCTTCCATTCTTC -3'
(R):5'- GTCAGAAGTTCTCGAGGATTTACC -3'

Posted On

2014-09-17