Mutagenetix > Incidental Mutation

Incidental Mutation 'R2056:Tgm4'

228202

Institutional Source

Beutler Lab

Gene Symbol

Tgm4

Ensembl Gene

ENSMUSG00000025787

Gene Name

transglutaminase 4 (prostate)

Synonyms

Eapa1, 9530008N10Rik, experimental autoimmune prostatitis antigen 1

MMRRC Submission

040061-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.063) question?

Stock #

R2056 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

122863806-122896623 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 122890835 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 54 (I54T)

Ref Sequence

ENSEMBL: ENSMUSP00000149120 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026893] [ENSMUST00000140497] [ENSMUST00000215247] [ENSMUST00000217607]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000026893
AA Change: I478T

PolyPhen 2 Score 0.936 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000026893
Gene: ENSMUSG00000025787
AA Change: I478T

Domain	Start	End	E-Value	Type
Pfam:Transglut_N	8	118	4e-26	PFAM
TGc	247	340	6.25e-42	SMART
Pfam:Transglut_C	573	670	3e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000140497

SMART Domains

Protein: ENSMUSP00000122604
Gene: ENSMUSG00000025786

Domain	Start	End	E-Value	Type
low complexity region	25	35	N/A	INTRINSIC
transmembrane domain	46	68	N/A	INTRINSIC
transmembrane domain	73	95	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000214552

Predicted Effect

probably damaging
Transcript: ENSMUST00000215247
AA Change: I54T

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

Predicted Effect

probably benign
Transcript: ENSMUST00000217607

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.4%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit impaired copulatory plug formation, reduced fertilization and few litters sired. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg2	T	C	6: 58,667,525 (GRCm39)	V129A	probably benign	Het
Adh1	A	G	3: 137,992,676 (GRCm39)	D264G	probably damaging	Het
Ahnak2	T	A	12: 112,748,626 (GRCm39)	D407V	probably benign	Het
Alas1	T	C	9: 106,118,489 (GRCm39)	E211G	probably damaging	Het
Alkbh1	C	T	12: 87,490,520 (GRCm39)		probably benign	Het
Ankmy1	T	C	1: 92,809,553 (GRCm39)	I662V	possibly damaging	Het
Ano1	A	G	7: 144,201,789 (GRCm39)	V334A	probably damaging	Het
Apc	A	G	18: 34,449,481 (GRCm39)	R2092G	probably damaging	Het
Arhgap18	C	T	10: 26,730,904 (GRCm39)	T122I	probably benign	Het
Atp2b4	G	T	1: 133,654,275 (GRCm39)	Q777K	probably benign	Het
Brap	G	A	5: 121,801,529 (GRCm39)	G95S	probably damaging	Het
Cbfa2t2	G	A	2: 154,377,077 (GRCm39)	A587T	probably damaging	Het
Ccdc180	A	G	4: 45,932,477 (GRCm39)	I1308V	probably benign	Het
Ccser1	T	A	6: 61,399,936 (GRCm39)		probably null	Het
Cd84	A	G	1: 171,700,317 (GRCm39)	T145A	possibly damaging	Het
Cmtm4	A	C	8: 105,081,920 (GRCm39)	F156V	probably damaging	Het
Cntln	G	A	4: 84,967,911 (GRCm39)	R710K	probably benign	Het
Csn1s1	A	T	5: 87,819,387 (GRCm39)	T15S	possibly damaging	Het
Cul9	T	C	17: 46,854,298 (GRCm39)	T135A	probably benign	Het
Cyp2d10	T	A	15: 82,288,015 (GRCm39)	I363F	probably damaging	Het
Dhx38	G	T	8: 110,289,352 (GRCm39)		probably benign	Het
Dis3	A	T	14: 99,336,251 (GRCm39)	I85N	possibly damaging	Het
Dmbt1	G	A	7: 130,707,900 (GRCm39)	A1381T	possibly damaging	Het
Dscaml1	A	G	9: 45,661,430 (GRCm39)	D1776G	probably damaging	Het
Erbin	A	G	13: 103,966,824 (GRCm39)	S1209P	probably benign	Het
Fat4	T	A	3: 38,945,319 (GRCm39)	M1404K	possibly damaging	Het
Fbxo45	G	T	16: 32,057,346 (GRCm39)	Q183K	possibly damaging	Het
Frmd4b	C	T	6: 97,389,448 (GRCm39)		probably null	Het
Fzd7	A	G	1: 59,523,361 (GRCm39)	S415G	probably benign	Het
Gpd2	T	A	2: 57,229,025 (GRCm39)		probably null	Het
Gsk3b	T	A	16: 38,008,271 (GRCm39)	D192E	probably benign	Het
Gstcd	T	C	3: 132,787,814 (GRCm39)	I295V	probably benign	Het
Gucy1a1	A	G	3: 82,016,592 (GRCm39)	L132P	possibly damaging	Het
Il12b	A	C	11: 44,298,727 (GRCm39)	T61P	probably damaging	Het
Il7	A	T	3: 7,638,975 (GRCm39)	N130K	probably damaging	Het
Itih3	A	C	14: 30,631,481 (GRCm39)		probably null	Het
Kdm5b	T	A	1: 134,540,952 (GRCm39)	D681E	probably benign	Het
Kif11	A	G	19: 37,390,660 (GRCm39)	N408D	probably benign	Het
Kng2	TATGACCATGACCATGACCATGACCATGACCATGACCAT	TATGACCATGACCATGACCATGACCATGACCAT	16: 22,806,703 (GRCm39)		probably benign	Het
Kremen2	T	C	17: 23,961,691 (GRCm39)	E272G	possibly damaging	Het
Krt9	G	T	11: 100,082,321 (GRCm39)	N201K	probably damaging	Het
Lmbr1	G	A	5: 29,438,092 (GRCm39)	P304L	probably benign	Het
Lrrfip1	A	G	1: 91,043,539 (GRCm39)	N648S	probably benign	Het
Mab21l3	C	A	3: 101,722,469 (GRCm39)	V386L	possibly damaging	Het
Mamdc4	T	C	2: 25,454,180 (GRCm39)	Q1149R	probably benign	Het
Mast1	A	G	8: 85,646,995 (GRCm39)	F677L	possibly damaging	Het
Mcoln3	A	G	3: 145,833,979 (GRCm39)	D173G	probably benign	Het
Mmrn1	C	T	6: 60,921,789 (GRCm39)	T82I	probably benign	Het
Mtcl2	C	T	2: 156,864,747 (GRCm39)	G1154S	probably benign	Het
Muc5ac	A	G	7: 141,345,772 (GRCm39)	T203A	probably benign	Het
Myo9b	T	C	8: 71,812,334 (GRCm39)	I2035T	possibly damaging	Het
Ndst3	T	C	3: 123,465,534 (GRCm39)	N146S	probably damaging	Het
Neu4	A	G	1: 93,950,172 (GRCm39)	T21A	possibly damaging	Het
Nos1ap	G	A	1: 170,155,215 (GRCm39)	L267F	probably damaging	Het
Or14c40	A	T	7: 86,313,591 (GRCm39)	K240N	probably damaging	Het
Or3a4	A	T	11: 73,944,819 (GRCm39)	Y255*	probably null	Het
Or4p8	A	G	2: 88,727,105 (GRCm39)	F279L	probably damaging	Het
Phc1	T	C	6: 122,310,299 (GRCm39)	N136S	probably damaging	Het
Prkdc	A	G	16: 15,545,469 (GRCm39)	T1862A	probably benign	Het
Psd2	A	G	18: 36,139,744 (GRCm39)	D596G	possibly damaging	Het
Psmc3	T	C	2: 90,888,433 (GRCm39)	F315L	probably benign	Het
Rerg	G	A	6: 137,034,878 (GRCm39)	T42I	probably benign	Het
Rif1	T	A	2: 51,983,588 (GRCm39)	M577K	probably damaging	Het
Sap30	T	C	8: 57,940,282 (GRCm39)		probably null	Het
Scn2b	T	C	9: 45,036,815 (GRCm39)	Y108H	probably damaging	Het
Senp2	C	T	16: 21,832,949 (GRCm39)	T79I	probably damaging	Het
Serpinb2	T	C	1: 107,451,543 (GRCm39)	V232A	probably damaging	Het
Sgpp2	T	A	1: 78,393,588 (GRCm39)	L197Q	probably damaging	Het
Slc27a4	T	C	2: 29,700,953 (GRCm39)	W320R	probably damaging	Het
Spmip4	T	C	6: 50,550,725 (GRCm39)	R575G	possibly damaging	Het
Thbs4	T	A	13: 92,927,387 (GRCm39)	D34V	probably benign	Het
Tlcd4	T	G	3: 121,001,070 (GRCm39)	I188L	probably benign	Het
Tmem176b	G	A	6: 48,813,267 (GRCm39)	T64I	probably damaging	Het
Tmod2	T	C	9: 75,484,524 (GRCm39)	E248G	probably benign	Het
Ttc6	T	A	12: 57,784,479 (GRCm39)	D1849E	probably benign	Het
Ttn	T	C	2: 76,615,882 (GRCm39)	D8360G	possibly damaging	Het
Unc80	A	G	1: 66,679,711 (GRCm39)	E2094G	possibly damaging	Het
Vmn2r18	A	T	5: 151,508,160 (GRCm39)	D321E	probably damaging	Het

Other mutations in Tgm4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00432:Tgm4	APN	9	122,891,447 (GRCm39)	unclassified	probably benign
IGL01402:Tgm4	APN	9	122,880,519 (GRCm39)	missense	possibly damaging	0.82
IGL02000:Tgm4	APN	9	122,885,531 (GRCm39)	missense	probably damaging	1.00
IGL02120:Tgm4	APN	9	122,875,594 (GRCm39)	missense	probably damaging	0.98
IGL03130:Tgm4	APN	9	122,885,580 (GRCm39)	missense	probably damaging	1.00
IGL03188:Tgm4	APN	9	122,874,101 (GRCm39)	missense	probably null	0.06
R0329:Tgm4	UTSW	9	122,877,622 (GRCm39)	critical splice donor site	probably null
R0480:Tgm4	UTSW	9	122,891,484 (GRCm39)	missense	probably benign
R0644:Tgm4	UTSW	9	122,880,523 (GRCm39)	missense	probably damaging	1.00
R0990:Tgm4	UTSW	9	122,875,576 (GRCm39)	missense	probably benign	0.02
R1604:Tgm4	UTSW	9	122,874,129 (GRCm39)	missense	probably benign	0.39
R1644:Tgm4	UTSW	9	122,880,481 (GRCm39)	missense	probably damaging	1.00
R2058:Tgm4	UTSW	9	122,890,835 (GRCm39)	missense	probably damaging	1.00
R2059:Tgm4	UTSW	9	122,890,835 (GRCm39)	missense	probably damaging	1.00
R2076:Tgm4	UTSW	9	122,880,160 (GRCm39)	missense	probably benign	0.24
R2437:Tgm4	UTSW	9	122,877,614 (GRCm39)	nonsense	probably null
R4392:Tgm4	UTSW	9	122,895,817 (GRCm39)	missense	probably benign	0.10
R4407:Tgm4	UTSW	9	122,885,595 (GRCm39)	missense	probably damaging	1.00
R4752:Tgm4	UTSW	9	122,880,451 (GRCm39)	missense	probably damaging	1.00
R5288:Tgm4	UTSW	9	122,885,559 (GRCm39)	missense	probably damaging	1.00
R5365:Tgm4	UTSW	9	122,895,866 (GRCm39)	missense	probably damaging	1.00
R5386:Tgm4	UTSW	9	122,885,559 (GRCm39)	missense	probably damaging	1.00
R5790:Tgm4	UTSW	9	122,890,808 (GRCm39)	missense	probably damaging	0.98
R5890:Tgm4	UTSW	9	122,890,703 (GRCm39)	missense	probably damaging	1.00
R6102:Tgm4	UTSW	9	122,885,600 (GRCm39)	missense	probably benign
R6358:Tgm4	UTSW	9	122,885,583 (GRCm39)	missense	probably damaging	1.00
R6956:Tgm4	UTSW	9	122,893,768 (GRCm39)	missense	possibly damaging	0.93
R6966:Tgm4	UTSW	9	122,880,207 (GRCm39)	missense	possibly damaging	0.68
R7091:Tgm4	UTSW	9	122,869,525 (GRCm39)	missense	probably damaging	1.00
R7258:Tgm4	UTSW	9	122,891,556 (GRCm39)	missense	probably benign	0.02
R7313:Tgm4	UTSW	9	122,891,556 (GRCm39)	missense	probably benign	0.02
R7369:Tgm4	UTSW	9	122,885,749 (GRCm39)	critical splice donor site	probably null
R7802:Tgm4	UTSW	9	122,880,401 (GRCm39)	intron	probably benign
R8219:Tgm4	UTSW	9	122,874,117 (GRCm39)	missense	probably benign
R8787:Tgm4	UTSW	9	122,890,910 (GRCm39)	missense	probably damaging	1.00
R8936:Tgm4	UTSW	9	122,869,541 (GRCm39)	missense	possibly damaging	0.92
R9045:Tgm4	UTSW	9	122,877,616 (GRCm39)	missense	possibly damaging	0.94
R9328:Tgm4	UTSW	9	122,885,697 (GRCm39)	missense	possibly damaging	0.93
R9359:Tgm4	UTSW	9	122,881,837 (GRCm39)	missense	probably damaging	1.00
R9403:Tgm4	UTSW	9	122,881,837 (GRCm39)	missense	probably damaging	1.00
R9471:Tgm4	UTSW	9	122,869,444 (GRCm39)	missense	probably benign
R9746:Tgm4	UTSW	9	122,875,634 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- ATGGGAAGGTTCTCTCAGCC -3'
(R):5'- GTGCCTGGATTCCTTGTCAC -3'

Sequencing Primer
(F):5'- CCCAAGGGTGTCTTCAGAAAATATTC -3'
(R):5'- TGGATTCCTTGTCACCACCAAAATG -3'

Posted On

2014-09-17