Mutagenetix > Incidental Mutation

Incidental Mutation 'R2064:Lcp1'

229013

Institutional Source

Beutler Lab

Gene Symbol

Lcp1

Ensembl Gene

ENSMUSG00000021998

Gene Name

lymphocyte cytosolic protein 1

Synonyms

D14Ertd310e, L-fimbrin, Pls2, L-plastin

MMRRC Submission

040069-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2064 (G1)

Quality Score

200

Status

Validated

Chromosome

Chromosomal Location

75131101-75230842 bp(+) (GRCm38)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

A to G at 75198075 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000116271 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000122840] [ENSMUST00000122840] [ENSMUST00000124499] [ENSMUST00000125833] [ENSMUST00000131802] [ENSMUST00000134114] [ENSMUST00000143539] [ENSMUST00000145303]

AlphaFold

Q61233

Predicted Effect

probably null
Transcript: ENSMUST00000122840

SMART Domains

Protein: ENSMUSP00000117984
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	81	7.7e-3	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000122840

SMART Domains

Protein: ENSMUSP00000117984
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	81	7.7e-3	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000124499

SMART Domains

Protein: ENSMUSP00000121201
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	81	7.7e-3	SMART
CH	122	234	1.15e-24	SMART
CH	266	373	1.51e-19	SMART
CH	396	501	1.87e-24	SMART
CH	517	622	8.55e-19	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000125833

SMART Domains

Protein: ENSMUSP00000116033
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	81	7.7e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130510

Predicted Effect

probably null
Transcript: ENSMUST00000131802

SMART Domains

Protein: ENSMUSP00000117137
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	81	7.7e-3	SMART
CH	122	234	1.15e-24	SMART
CH	266	373	1.51e-19	SMART
CH	396	501	1.87e-24	SMART
CH	517	622	8.55e-19	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000134114

SMART Domains

Protein: ENSMUSP00000121376
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	81	7.7e-3	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000143539

SMART Domains

Protein: ENSMUSP00000118721
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	76	4.45e1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000145303

SMART Domains

Protein: ENSMUSP00000116271
Gene: ENSMUSG00000021998

Domain	Start	End	E-Value	Type
EFh	13	41	6.91e-5	SMART
EFh	53	81	7.7e-3	SMART
CH	122	234	1.15e-24	SMART
CH	266	373	1.51e-19	SMART
CH	396	501	1.87e-24	SMART
CH	517	622	8.55e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149883

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161819

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.4%
20x: 95.3%

Validation Efficiency

99% (114/115)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Plastins are a family of actin-binding proteins that are conserved throughout eukaryote evolution and expressed in most tissues of higher eukaryotes. In humans, two ubiquitous plastin isoforms (L and T) have been identified. Plastin 1 (otherwise known as Fimbrin) is a third distinct plastin isoform which is specifically expressed at high levels in the small intestine. The L isoform is expressed only in hemopoietic cell lineages, while the T isoform has been found in all other normal cells of solid tissues that have replicative potential (fibroblasts, endothelial cells, epithelial cells, melanocytes, etc.). However, L-plastin has been found in many types of malignant human cells of non-hemopoietic origin suggesting that its expression is induced accompanying tumorigenesis in solid tissues. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased susceptibility to S. aureus infection, defective neutrophil killing of S. aureus, and impaired adhesion-dependent respiratory bursts in neutrophils. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 112 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410089E03Rik	T	A	15: 8,186,165	S402T	probably damaging	Het
4933436I01Rik	T	A	X: 67,920,702	I184L	probably benign	Het
9530002B09Rik	T	A	4: 122,689,322		probably benign	Het
Actr1b	A	G	1: 36,702,087	F138L	possibly damaging	Het
Adamts14	G	T	10: 61,205,522	P803Q	probably benign	Het
Afap1l1	A	T	18: 61,739,122		probably null	Het
Akt3	A	G	1: 177,102,985	S136P	possibly damaging	Het
Aldh16a1	C	T	7: 45,147,161		probably null	Het
Alg12	A	G	15: 88,812,115	W238R	probably damaging	Het
Amy2a1	T	C	3: 113,530,568	I108V	probably benign	Het
Arhgap23	T	A	11: 97,493,062	C1144S	probably benign	Het
Arhgef40	G	A	14: 51,996,183	V829M	probably damaging	Het
Atg7	C	A	6: 114,703,363	N344K	probably damaging	Het
Aunip	T	A	4: 134,523,307	S188T	probably benign	Het
Bmpr1b	A	T	3: 141,870,807	H88Q	probably benign	Het
Brpf3	G	A	17: 28,821,364	G920S	probably benign	Het
Cdc123	C	T	2: 5,795,543		probably benign	Het
Cdhr1	T	C	14: 37,095,105	R100G	probably benign	Het
Cdkn2d	A	G	9: 21,290,879	V24A	probably damaging	Het
Cirbp	T	C	10: 80,170,332		probably benign	Het
Clptm1l	C	T	13: 73,607,723	Q153*	probably null	Het
Col12a1	A	G	9: 79,662,454		probably benign	Het
Cpox	T	A	16: 58,674,409	C270S	probably benign	Het
Cspg4	A	G	9: 56,896,656	D1677G	probably damaging	Het
Cyp4a10	T	A	4: 115,524,720		probably benign	Het
Dctn4	T	C	18: 60,538,277	F74L	possibly damaging	Het
Dennd5a	G	A	7: 109,898,693		probably benign	Het
Dnaaf3	T	C	7: 4,523,799	I426M	possibly damaging	Het
Dnah9	C	T	11: 66,145,435	S185N	probably benign	Het
Dqx1	T	G	6: 83,058,543		probably benign	Het
Dtx2	C	T	5: 136,030,577	S493F	probably damaging	Het
Ehd1	T	C	19: 6,298,078	L362P	probably benign	Het
Endov	T	C	11: 119,499,582	F12S	probably damaging	Het
Ep400	A	C	5: 110,735,404		probably benign	Het
Epha1	G	T	6: 42,366,053	H187Q	probably benign	Het
Exoc2	T	C	13: 30,935,561	D119G	probably benign	Het
Fbn2	C	T	18: 58,048,849	E1827K	probably damaging	Het
Fbxo41	C	T	6: 85,478,471	W577*	probably null	Het
Fgd6	G	A	10: 94,045,041	A586T	probably damaging	Het
Gm12695	T	C	4: 96,769,726	T69A	probably benign	Het
Gm12888	A	T	4: 121,324,872	W8R	unknown	Het
Gm2959	A	G	14: 42,413,701		noncoding transcript	Het
Gm6214	A	G	3: 140,839,217		noncoding transcript	Het
Gm9912	T	C	3: 149,185,159	T113A	unknown	Het
Gmeb2	A	G	2: 181,253,970	L469P	probably benign	Het
Gosr1	T	C	11: 76,737,398	I177V	probably benign	Het
Gria1	T	C	11: 57,317,708	F810L	probably damaging	Het
Gtf2ird2	C	T	5: 134,216,498	Q533*	probably null	Het
Hadhb	T	A	5: 30,173,798		probably null	Het
Hat1	A	T	2: 71,410,160	Y66F	possibly damaging	Het
Hk1	T	C	10: 62,286,536	Y488C	probably benign	Het
Htt	C	T	5: 34,825,982	T975I	probably benign	Het
Ifnb1	T	A	4: 88,522,759	I6F	possibly damaging	Het
Il19	T	C	1: 130,939,117	H42R	probably benign	Het
Il2rg	A	G	X: 101,267,810	L57P	possibly damaging	Het
Impg2	G	A	16: 56,243,630		probably null	Het
Invs	T	A	4: 48,396,287	L320Q	probably damaging	Het
Itga9	T	C	9: 118,807,293	F683S	probably damaging	Het
Itih2	A	G	2: 10,130,574	S2P	possibly damaging	Het
Itpr3	G	A	17: 27,098,076	M768I	probably benign	Het
Kcnab1	A	G	3: 65,364,639	E315G	probably benign	Het
Kcnmb2	A	C	3: 32,198,288	I213L	probably damaging	Het
Khdc1a	T	A	1: 21,350,972	M127K	probably benign	Het
Klhl28	T	C	12: 64,943,472	N565S	probably benign	Het
Mcm4	T	C	16: 15,634,469	T267A	possibly damaging	Het
Mlxipl	A	T	5: 135,132,777	T517S	possibly damaging	Het
Mpp3	T	A	11: 102,000,690	I541L	probably benign	Het
Mpp4	G	A	1: 59,143,782	P322L	possibly damaging	Het
Myh15	G	A	16: 49,155,621	A1351T	possibly damaging	Het
Nacc1	A	T	8: 84,673,118	M490K	probably benign	Het
Nbeal1	C	A	1: 60,270,356	Q496K	possibly damaging	Het
Oas1g	T	C	5: 120,885,883	E121G	probably damaging	Het
Olfr125	T	A	17: 37,835,002	M1K	probably null	Het
Pard3	T	C	8: 127,610,611	L1236P	probably damaging	Het
Phc2	T	C	4: 128,747,136	F672S	probably damaging	Het
Phf21a	C	A	2: 92,327,077	N183K	possibly damaging	Het
Plxnb3	T	A	X: 73,771,751	Y1845*	probably null	Het
Prl3c1	G	A	13: 27,196,737		probably null	Het
Prl7a2	T	A	13: 27,660,887	Y172F	probably damaging	Het
Psg16	T	G	7: 17,093,748	S210A	possibly damaging	Het
Psg25	T	A	7: 18,521,253	K446M	probably damaging	Het
Ptprz1	A	G	6: 23,050,389		probably benign	Het
Rgs7	A	T	1: 175,121,942	F160L	probably damaging	Het
Rpl22l1	A	T	3: 28,806,808	E57D	possibly damaging	Het
Rpl35	A	G	2: 39,004,741	L44P	possibly damaging	Het
Rtn4r	T	C	16: 18,151,257	L183P	probably damaging	Het
Skint1	T	A	4: 112,025,533	V258D	probably benign	Het
Slc4a7	G	A	14: 14,733,773	R67H	probably damaging	Het
Smg1	C	T	7: 118,156,867		probably benign	Het
Smurf2	T	C	11: 106,871,548	T39A	probably damaging	Het
Sspo	A	T	6: 48,473,662	D2595V	probably damaging	Het
Tatdn2	A	G	6: 113,704,142	K379E	probably benign	Het
Tbc1d14	G	A	5: 36,522,930	R68*	probably null	Het
Tgm1	A	G	14: 55,709,471	I360T	probably damaging	Het
Thrap3	T	C	4: 126,175,396	Y654C	possibly damaging	Het
Traf1	A	T	2: 34,948,190	I212N	probably benign	Het
Ttc17	C	A	2: 94,366,547	W485L	probably damaging	Het
Ttn	C	A	2: 76,938,331	V2920F	probably damaging	Het
Tyr	T	C	7: 87,492,843	I93V	probably benign	Het
Ubap2	C	T	4: 41,199,872	A752T	probably benign	Het
Vmn1r212	A	G	13: 22,884,115	V16A	probably benign	Het
Vmn1r55	A	G	7: 5,147,049	V125A	possibly damaging	Het
Vmn2r120	T	A	17: 57,524,553	H412L	possibly damaging	Het
Xirp1	T	C	9: 120,016,896	I974V	probably benign	Het
Zap70	A	G	1: 36,779,134	T301A	probably benign	Het
Zfhx4	A	G	3: 5,398,927	K1382E	probably damaging	Het
Zfp280b	T	A	10: 76,039,183	C299S	probably damaging	Het
Zfp352	C	T	4: 90,225,120	S499L	probably benign	Het
Zfp423	G	A	8: 87,781,358	A661V	probably benign	Het
Zfp57	T	A	17: 37,009,676	F141I	possibly damaging	Het
Zfp946	A	T	17: 22,455,465	H400L	probably damaging	Het
Zgrf1	T	C	3: 127,613,350	C1589R	probably damaging	Het

Other mutations in Lcp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01103:Lcp1	APN	14	75227093	critical splice donor site	probably null
IGL01768:Lcp1	APN	14	75224133	missense	probably benign	0.40
IGL01801:Lcp1	APN	14	75199375	missense	probably benign	0.10
IGL01940:Lcp1	APN	14	75216365	missense	probably benign	0.17
IGL02135:Lcp1	APN	14	75200486	missense	probably benign	0.00
IGL02185:Lcp1	APN	14	75229300	missense	possibly damaging	0.73
IGL02478:Lcp1	APN	14	75224096	missense	probably benign	0.04
IGL02604:Lcp1	APN	14	75224126	missense	probably benign	0.11
R0244:Lcp1	UTSW	14	75227001	missense	possibly damaging	0.92
R0295:Lcp1	UTSW	14	75199420	missense	probably null	0.59
R0313:Lcp1	UTSW	14	75199433	missense	probably damaging	1.00
R0415:Lcp1	UTSW	14	75227006	missense	possibly damaging	0.88
R0751:Lcp1	UTSW	14	75199387	missense	probably benign	0.00
R0811:Lcp1	UTSW	14	75214488	missense	probably benign	0.00
R0812:Lcp1	UTSW	14	75214488	missense	probably benign	0.00
R1200:Lcp1	UTSW	14	75229302	missense	possibly damaging	0.73
R1713:Lcp1	UTSW	14	75199444	critical splice donor site	probably null
R1915:Lcp1	UTSW	14	75199297	missense	possibly damaging	0.81
R1969:Lcp1	UTSW	14	75200506	missense	probably damaging	1.00
R1970:Lcp1	UTSW	14	75200506	missense	probably damaging	1.00
R1971:Lcp1	UTSW	14	75200506	missense	probably damaging	1.00
R2045:Lcp1	UTSW	14	75200401	missense	probably benign	0.01
R3949:Lcp1	UTSW	14	75206129	missense	possibly damaging	0.68
R4062:Lcp1	UTSW	14	75215180	missense	probably damaging	1.00
R4521:Lcp1	UTSW	14	75215168	missense	possibly damaging	0.94
R4811:Lcp1	UTSW	14	75200408	missense	probably damaging	0.99
R4854:Lcp1	UTSW	14	75200489	missense	probably damaging	1.00
R4974:Lcp1	UTSW	14	75208471	nonsense	probably null
R5539:Lcp1	UTSW	14	75229298	missense	probably benign	0.08
R5561:Lcp1	UTSW	14	75212508	missense	probably benign	0.01
R5724:Lcp1	UTSW	14	75226982	missense	probably benign	0.18
R5989:Lcp1	UTSW	14	75199387	missense	probably benign	0.00
R6731:Lcp1	UTSW	14	75206189	missense	probably damaging	1.00
R7346:Lcp1	UTSW	14	75210506	missense	possibly damaging	0.49
R7670:Lcp1	UTSW	14	75200431	missense	probably benign	0.12
R7698:Lcp1	UTSW	14	75206211	nonsense	probably null
R9780:Lcp1	UTSW	14	75202738	missense	probably damaging	1.00
S24628:Lcp1	UTSW	14	75227006	missense	possibly damaging	0.88
X0027:Lcp1	UTSW	14	75227086	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAGCTTACCACGTGAGGAG -3'
(R):5'- GGAAGGACCTGTTTTCTCCAG -3'

Sequencing Primer
(F):5'- TTACCACGTGAGGAGCTGCC -3'
(R):5'- AGGTGACCCCTATGAAGTTTGACC -3'

Posted On

2014-09-17