Mutagenetix > Incidental Mutation

Incidental Mutation 'R2080:Plce1'

229452

Institutional Source

Beutler Lab

Gene Symbol

Plce1

Ensembl Gene

ENSMUSG00000024998

Gene Name

phospholipase C, epsilon 1

Synonyms

4933403A21Rik, PLCepsilon

MMRRC Submission

040085-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.463) question?

Stock #

R2080 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

38481109-38785030 bp(+) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

C to T at 38727013 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000138360 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000169713] [ENSMUST00000182267] [ENSMUST00000182481]

AlphaFold

Q8K4S1

Predicted Effect

probably benign
Transcript: ENSMUST00000169713

SMART Domains

Protein: ENSMUSP00000130604
Gene: ENSMUSG00000024998

Domain	Start	End	E-Value	Type
low complexity region	471	489	N/A	INTRINSIC
RasGEF	525	828	8.06e-9	SMART
low complexity region	1162	1172	N/A	INTRINSIC
Pfam:EF-hand_like	1305	1369	7.6e-11	PFAM
PLCXc	1373	1521	1.05e-81	SMART
low complexity region	1561	1575	N/A	INTRINSIC
SCOP:d1qasa3	1634	1662	1e-3	SMART
low complexity region	1666	1680	N/A	INTRINSIC
PLCYc	1710	1826	4.28e-46	SMART
C2	1850	1948	3.7e-10	SMART
PDB:2BYE\|A	1986	2094	6e-47	PDB
RA	2115	2218	1.12e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000182267

SMART Domains

Protein: ENSMUSP00000138330
Gene: ENSMUSG00000024998

Domain	Start	End	E-Value	Type
low complexity region	471	489	N/A	INTRINSIC
RasGEF	525	828	8.06e-9	SMART
low complexity region	1162	1172	N/A	INTRINSIC
Pfam:EF-hand_like	1305	1369	5.9e-11	PFAM
PLCXc	1373	1521	1.05e-81	SMART
low complexity region	1552	1581	N/A	INTRINSIC
SCOP:d1qasa3	1648	1676	1e-3	SMART
low complexity region	1680	1694	N/A	INTRINSIC
PLCYc	1724	1840	4.28e-46	SMART
C2	1864	1962	3.7e-10	SMART
PDB:2BYE\|A	2000	2108	6e-47	PDB
RA	2129	2232	1.12e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000182481

SMART Domains

Protein: ENSMUSP00000138360
Gene: ENSMUSG00000024998

Domain	Start	End	E-Value	Type
low complexity region	471	489	N/A	INTRINSIC
RasGEF	525	828	8.06e-9	SMART
low complexity region	1162	1172	N/A	INTRINSIC
Pfam:EF-hand_like	1305	1369	8e-11	PFAM
PLCXc	1373	1521	1.05e-81	SMART
low complexity region	1561	1575	N/A	INTRINSIC
SCOP:d1qasa3	1634	1662	1e-3	SMART
low complexity region	1666	1680	N/A	INTRINSIC
PLCYc	1710	1826	4.28e-46	SMART
C2	1850	1948	3.7e-10	SMART
PDB:2BYE\|A	1986	2094	6e-47	PDB
RA	2115	2218	1.12e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182589

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.2%
20x: 94.7%

Validation Efficiency

100% (55/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a phospholipase enzyme that catalyzes the hydrolysis of phosphatidylinositol-4,5-bisphosphate to generate two second messengers: inositol 1,4,5-triphosphate (IP3) and diacylglycerol (DAG). These second messengers subsequently regulate various processes affecting cell growth, differentiation, and gene expression. This enzyme is regulated by small monomeric GTPases of the Ras and Rho families and by heterotrimeric G proteins. In addition to its phospholipase C catalytic activity, this enzyme has an N-terminal domain with guanine nucleotide exchange (GEF) activity. Mutations in this gene cause early-onset nephrotic syndrome; characterized by proteinuria, edema, and diffuse mesangial sclerosis or focal and segmental glomerulosclerosis. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Sep 2009]
PHENOTYPE: Homozygous mutation of this gene results in a congenital semilunar valvulogenesis defect which causes regurgitation and stenosis, and decreased incidence of induced skin tumors. Another mutant exhibits decreased cardiac contraction and increased hypertrophy in response to chronic stress. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310003L06Rik	A	T	5: 87,971,933 (GRCm38)	D183V	probably damaging	Het
Ambra1	T	A	2: 91,885,719 (GRCm38)	D858E	probably damaging	Het
Amdhd2	T	C	17: 24,156,604 (GRCm38)	T370A	probably benign	Het
Amy1	A	G	3: 113,558,094 (GRCm38)	W449R	probably benign	Het
Aox3	A	T	1: 58,186,280 (GRCm38)	I1179F	probably benign	Het
Atp10a	C	A	7: 58,824,327 (GRCm38)	Q1121K	probably damaging	Het
Btaf1	C	T	19: 36,951,148 (GRCm38)	A123V	probably benign	Het
Car6	T	C	4: 150,198,141 (GRCm38)	K16E	probably benign	Het
Cgnl1	C	T	9: 71,656,096 (GRCm38)	D779N	probably benign	Het
Cyp2a4	G	A	7: 26,308,537 (GRCm38)	R123Q	possibly damaging	Het
D430041D05Rik	C	T	2: 104,156,816 (GRCm38)	R1895Q	probably damaging	Het
D5Ertd579e	T	A	5: 36,616,206 (GRCm38)	T282S	probably benign	Het
Dsel	T	C	1: 111,859,962 (GRCm38)	T948A	probably benign	Het
Ednrb	A	T	14: 103,843,100 (GRCm38)	I126N	probably damaging	Het
Egln1	A	G	8: 124,948,306 (GRCm38)	M250T	probably benign	Het
Epb41l3	A	T	17: 69,253,468 (GRCm38)	I337L	possibly damaging	Het
Epg5	T	C	18: 77,948,745 (GRCm38)	I219T	probably benign	Het
Gm13030	T	C	4: 138,873,419 (GRCm38)		probably benign	Het
Gm1527	T	A	3: 28,926,661 (GRCm38)	C637S	probably benign	Het
Hist1h1a	A	G	13: 23,763,949 (GRCm38)	N78S	possibly damaging	Het
Insrr	T	C	3: 87,814,291 (GRCm38)	I1168T	possibly damaging	Het
Ireb2	T	C	9: 54,896,552 (GRCm38)	V509A	possibly damaging	Het
Kmt2c	T	C	5: 25,354,717 (GRCm38)	D981G	probably damaging	Het
Ktn1	A	G	14: 47,725,960 (GRCm38)	E1164G	probably damaging	Het
L3hypdh	A	T	12: 72,079,527 (GRCm38)	V213E	probably damaging	Het
Masp1	T	G	16: 23,491,959 (GRCm38)	D241A	probably damaging	Het
Mfsd13b	A	G	7: 120,991,824 (GRCm38)	I1V	probably null	Het
Muc5b	T	C	7: 141,869,754 (GRCm38)	V4531A	probably benign	Het
Myh2	A	T	11: 67,174,941 (GRCm38)		probably null	Het
Naip5	A	G	13: 100,221,533 (GRCm38)	L1065P	probably damaging	Het
Necab1	T	C	4: 15,140,219 (GRCm38)		probably benign	Het
Nemf	A	G	12: 69,353,786 (GRCm38)		probably benign	Het
Nfil3	A	T	13: 52,968,033 (GRCm38)	D278E	possibly damaging	Het
Nup98	T	C	7: 102,180,424 (GRCm38)	N393S	probably damaging	Het
Ogdh	T	A	11: 6,349,393 (GRCm38)	M753K	probably benign	Het
Olfr11	A	T	13: 21,639,436 (GRCm38)	V29E	probably damaging	Het
Olfr1297	C	T	2: 111,621,739 (GRCm38)	V112M	probably benign	Het
Olfr273	T	C	4: 52,855,568 (GRCm38)	Y315C	probably benign	Het
Olfr561	T	C	7: 102,775,243 (GRCm38)	F240L	probably benign	Het
Olfr901	T	A	9: 38,431,082 (GRCm38)	S267T	probably benign	Het
Pkd2	A	G	5: 104,477,123 (GRCm38)	K262E	probably benign	Het
Ppm1f	T	A	16: 16,923,880 (GRCm38)	M406K	possibly damaging	Het
Ptgs1	C	T	2: 36,242,847 (GRCm38)	Q286*	probably null	Het
Scube2	T	C	7: 109,808,505 (GRCm38)	T743A	possibly damaging	Het
Tipin	T	A	9: 64,290,376 (GRCm38)	L69*	probably null	Het
Tlk1	T	A	2: 70,738,445 (GRCm38)	K404N	probably damaging	Het
Tmem59	C	A	4: 107,178,774 (GRCm38)	L16I	probably damaging	Het
Utrn	T	C	10: 12,737,082 (GRCm38)	E426G	probably benign	Het
Xdh	A	T	17: 73,909,325 (GRCm38)	S709T	probably damaging	Het
Yjefn3	T	C	8: 69,889,487 (GRCm38)	N28D	probably damaging	Het
Zfp598	A	C	17: 24,679,667 (GRCm38)	D480A	probably damaging	Het

Other mutations in Plce1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00090:Plce1	APN	19	38,745,788 (GRCm38)	missense	probably damaging	0.99
IGL00336:Plce1	APN	19	38,651,906 (GRCm38)	missense	probably damaging	1.00
IGL00430:Plce1	APN	19	38,725,017 (GRCm38)	missense	probably damaging	1.00
IGL00466:Plce1	APN	19	38,721,029 (GRCm38)	missense	probably damaging	0.99
IGL00477:Plce1	APN	19	38,525,132 (GRCm38)	missense	probably benign	0.39
IGL00839:Plce1	APN	19	38,698,562 (GRCm38)	missense	probably damaging	1.00
IGL01292:Plce1	APN	19	38,651,785 (GRCm38)	splice site	probably benign
IGL01665:Plce1	APN	19	38,524,887 (GRCm38)	missense	probably benign	0.01
IGL01826:Plce1	APN	19	38,739,238 (GRCm38)	splice site	probably benign
IGL01833:Plce1	APN	19	38,720,981 (GRCm38)	missense	probably damaging	1.00
IGL02201:Plce1	APN	19	38,769,446 (GRCm38)	splice site	probably benign
IGL02276:Plce1	APN	19	38,524,757 (GRCm38)	missense	probably benign	0.05
IGL02477:Plce1	APN	19	38,719,553 (GRCm38)	splice site	probably benign
IGL02746:Plce1	APN	19	38,698,472 (GRCm38)	missense	probably damaging	1.00
Angel_food	UTSW	19	38,727,013 (GRCm38)	splice site	probably benign
Heavenly	UTSW	19	38,777,989 (GRCm38)	missense	probably damaging	1.00
R0058:Plce1	UTSW	19	38,525,184 (GRCm38)	missense	possibly damaging	0.90
R0058:Plce1	UTSW	19	38,525,184 (GRCm38)	missense	possibly damaging	0.90
R0064:Plce1	UTSW	19	38,780,784 (GRCm38)	critical splice donor site	probably null
R0116:Plce1	UTSW	19	38,721,821 (GRCm38)	missense	probably benign
R0138:Plce1	UTSW	19	38,524,419 (GRCm38)	missense	possibly damaging	0.49
R0240:Plce1	UTSW	19	38,728,886 (GRCm38)	missense	probably damaging	0.99
R0240:Plce1	UTSW	19	38,728,886 (GRCm38)	missense	probably damaging	0.99
R0504:Plce1	UTSW	19	38,778,021 (GRCm38)	splice site	probably benign
R0506:Plce1	UTSW	19	38,760,138 (GRCm38)	missense	probably benign	0.04
R0578:Plce1	UTSW	19	38,777,939 (GRCm38)	missense	probably damaging	1.00
R0645:Plce1	UTSW	19	38,777,989 (GRCm38)	missense	probably damaging	1.00
R0730:Plce1	UTSW	19	38,716,691 (GRCm38)	missense	probably damaging	0.98
R0920:Plce1	UTSW	19	38,736,521 (GRCm38)	missense	probably damaging	1.00
R1223:Plce1	UTSW	19	38,767,226 (GRCm38)	missense	probably damaging	1.00
R1223:Plce1	UTSW	19	38,702,013 (GRCm38)	missense	probably damaging	1.00
R1484:Plce1	UTSW	19	38,705,339 (GRCm38)	nonsense	probably null
R1488:Plce1	UTSW	19	38,716,803 (GRCm38)	missense	possibly damaging	0.92
R1598:Plce1	UTSW	19	38,720,996 (GRCm38)	missense	probably damaging	1.00
R1624:Plce1	UTSW	19	38,724,775 (GRCm38)	missense	probably damaging	1.00
R1732:Plce1	UTSW	19	38,716,838 (GRCm38)	missense	possibly damaging	0.56
R1778:Plce1	UTSW	19	38,780,790 (GRCm38)	splice site	probably benign
R1797:Plce1	UTSW	19	38,758,948 (GRCm38)	critical splice donor site	probably null
R1872:Plce1	UTSW	19	38,760,077 (GRCm38)	missense	probably damaging	1.00
R1876:Plce1	UTSW	19	38,780,623 (GRCm38)	missense	probably damaging	1.00
R1991:Plce1	UTSW	19	38,777,924 (GRCm38)	missense	probably damaging	1.00
R2103:Plce1	UTSW	19	38,777,924 (GRCm38)	missense	probably damaging	1.00
R2376:Plce1	UTSW	19	38,777,986 (GRCm38)	missense	probably benign	0.02
R2471:Plce1	UTSW	19	38,779,926 (GRCm38)	missense	probably damaging	1.00
R2511:Plce1	UTSW	19	38,760,054 (GRCm38)	missense	probably damaging	1.00
R2842:Plce1	UTSW	19	38,524,283 (GRCm38)	missense	probably damaging	1.00
R3037:Plce1	UTSW	19	38,777,884 (GRCm38)	missense	probably damaging	0.98
R3104:Plce1	UTSW	19	38,620,519 (GRCm38)	missense	probably benign	0.00
R3700:Plce1	UTSW	19	38,705,337 (GRCm38)	missense	probably damaging	1.00
R3750:Plce1	UTSW	19	38,777,899 (GRCm38)	missense	probably benign
R3753:Plce1	UTSW	19	38,651,834 (GRCm38)	missense	probably benign	0.09
R4027:Plce1	UTSW	19	38,524,265 (GRCm38)	missense	probably damaging	1.00
R4057:Plce1	UTSW	19	38,760,119 (GRCm38)	missense	probably damaging	1.00
R4376:Plce1	UTSW	19	38,705,447 (GRCm38)	critical splice donor site	probably null
R4433:Plce1	UTSW	19	38,767,301 (GRCm38)	missense	probably damaging	1.00
R4520:Plce1	UTSW	19	38,524,319 (GRCm38)	missense	possibly damaging	0.46
R4521:Plce1	UTSW	19	38,524,319 (GRCm38)	missense	possibly damaging	0.46
R4522:Plce1	UTSW	19	38,524,319 (GRCm38)	missense	possibly damaging	0.46
R4524:Plce1	UTSW	19	38,524,319 (GRCm38)	missense	possibly damaging	0.46
R4650:Plce1	UTSW	19	38,524,644 (GRCm38)	missense	probably benign	0.30
R4673:Plce1	UTSW	19	38,749,396 (GRCm38)	missense	possibly damaging	0.51
R4701:Plce1	UTSW	19	38,725,007 (GRCm38)	missense	probably benign	0.33
R4828:Plce1	UTSW	19	38,769,499 (GRCm38)	missense	probably damaging	1.00
R5103:Plce1	UTSW	19	38,767,215 (GRCm38)	missense	probably damaging	1.00
R5112:Plce1	UTSW	19	38,651,833 (GRCm38)	missense	probably benign	0.00
R5236:Plce1	UTSW	19	38,770,347 (GRCm38)	missense	probably benign	0.11
R5268:Plce1	UTSW	19	38,758,835 (GRCm38)	missense	possibly damaging	0.71
R5288:Plce1	UTSW	19	38,760,091 (GRCm38)	missense	probably damaging	1.00
R5384:Plce1	UTSW	19	38,760,091 (GRCm38)	missense	probably damaging	1.00
R5386:Plce1	UTSW	19	38,760,091 (GRCm38)	missense	probably damaging	1.00
R5448:Plce1	UTSW	19	38,779,917 (GRCm38)	missense	probably damaging	1.00
R5452:Plce1	UTSW	19	38,620,482 (GRCm38)	missense	probably benign	0.01
R6004:Plce1	UTSW	19	38,721,871 (GRCm38)	missense	probably damaging	1.00
R6062:Plce1	UTSW	19	38,524,751 (GRCm38)	missense	probably benign
R6147:Plce1	UTSW	19	38,702,037 (GRCm38)	missense	probably damaging	1.00
R6247:Plce1	UTSW	19	38,745,845 (GRCm38)	missense	probably damaging	1.00
R6278:Plce1	UTSW	19	38,725,051 (GRCm38)	splice site	probably null
R6306:Plce1	UTSW	19	38,769,465 (GRCm38)	missense	probably damaging	1.00
R6317:Plce1	UTSW	19	38,524,530 (GRCm38)	nonsense	probably null
R6437:Plce1	UTSW	19	38,525,132 (GRCm38)	missense	probably benign	0.39
R6522:Plce1	UTSW	19	38,748,521 (GRCm38)	splice site	probably null
R7034:Plce1	UTSW	19	38,739,357 (GRCm38)	missense	probably damaging	1.00
R7036:Plce1	UTSW	19	38,739,357 (GRCm38)	missense	probably damaging	1.00
R7037:Plce1	UTSW	19	38,702,017 (GRCm38)	missense	probably damaging	1.00
R7069:Plce1	UTSW	19	38,758,940 (GRCm38)	missense	probably damaging	1.00
R7180:Plce1	UTSW	19	38,779,785 (GRCm38)	missense	probably damaging	1.00
R7189:Plce1	UTSW	19	38,760,137 (GRCm38)	missense	probably damaging	0.97
R7227:Plce1	UTSW	19	38,726,902 (GRCm38)	missense	probably benign	0.00
R7253:Plce1	UTSW	19	38,698,508 (GRCm38)	missense	probably damaging	1.00
R7278:Plce1	UTSW	19	38,779,896 (GRCm38)	missense	possibly damaging	0.58
R7287:Plce1	UTSW	19	38,701,903 (GRCm38)	missense	probably benign	0.02
R7422:Plce1	UTSW	19	38,651,885 (GRCm38)	missense	probably damaging	1.00
R7557:Plce1	UTSW	19	38,765,404 (GRCm38)	missense	probably benign	0.30
R7607:Plce1	UTSW	19	38,524,752 (GRCm38)	missense	probably benign
R7615:Plce1	UTSW	19	38,524,665 (GRCm38)	missense	probably benign	0.18
R7653:Plce1	UTSW	19	38,749,319 (GRCm38)	missense	probably benign	0.20
R7685:Plce1	UTSW	19	38,748,433 (GRCm38)	missense	probably benign	0.00
R7716:Plce1	UTSW	19	38,716,851 (GRCm38)	missense	probably benign
R7744:Plce1	UTSW	19	38,620,455 (GRCm38)	missense	possibly damaging	0.93
R7790:Plce1	UTSW	19	38,780,696 (GRCm38)	missense	probably damaging	0.97
R7921:Plce1	UTSW	19	38,620,553 (GRCm38)	missense	probably benign	0.03
R8070:Plce1	UTSW	19	38,701,839 (GRCm38)	missense	probably damaging	0.99
R8087:Plce1	UTSW	19	38,736,521 (GRCm38)	missense	probably damaging	1.00
R8116:Plce1	UTSW	19	38,524,818 (GRCm38)	missense	probably benign	0.32
R8178:Plce1	UTSW	19	38,772,979 (GRCm38)	missense	possibly damaging	0.93
R8321:Plce1	UTSW	19	38,651,936 (GRCm38)	missense	probably benign	0.00
R8416:Plce1	UTSW	19	38,772,997 (GRCm38)	missense	possibly damaging	0.77
R8544:Plce1	UTSW	19	38,524,459 (GRCm38)	missense	probably benign	0.00
R8713:Plce1	UTSW	19	38,524,901 (GRCm38)	missense	probably benign	0.01
R8850:Plce1	UTSW	19	38,524,367 (GRCm38)	missense	probably benign
R9217:Plce1	UTSW	19	38,760,107 (GRCm38)	missense	probably damaging	1.00
R9231:Plce1	UTSW	19	38,716,596 (GRCm38)	missense	probably benign	0.13
R9232:Plce1	UTSW	19	38,716,979 (GRCm38)	missense	probably benign	0.16
R9332:Plce1	UTSW	19	38,737,933 (GRCm38)	missense	probably damaging	1.00
R9473:Plce1	UTSW	19	38,777,893 (GRCm38)	missense	possibly damaging	0.93
R9474:Plce1	UTSW	19	38,777,893 (GRCm38)	missense	possibly damaging	0.93
R9475:Plce1	UTSW	19	38,777,893 (GRCm38)	missense	possibly damaging	0.93
R9476:Plce1	UTSW	19	38,777,893 (GRCm38)	missense	possibly damaging	0.93
R9751:Plce1	UTSW	19	38,728,970 (GRCm38)	missense	probably damaging	1.00
R9780:Plce1	UTSW	19	38,620,690 (GRCm38)	missense	possibly damaging	0.94
R9781:Plce1	UTSW	19	38,525,210 (GRCm38)	missense	probably damaging	1.00
RF018:Plce1	UTSW	19	38,717,207 (GRCm38)	missense	probably damaging	0.99
X0022:Plce1	UTSW	19	38,726,999 (GRCm38)	missense	probably damaging	1.00
X0065:Plce1	UTSW	19	38,777,914 (GRCm38)	missense	possibly damaging	0.48
Z1176:Plce1	UTSW	19	38,769,460 (GRCm38)	missense	probably damaging	1.00
Z1176:Plce1	UTSW	19	38,724,980 (GRCm38)	nonsense	probably null
Z1176:Plce1	UTSW	19	38,701,894 (GRCm38)	missense	probably damaging	1.00
Z1177:Plce1	UTSW	19	38,651,842 (GRCm38)	missense	probably null	0.48

Predicted Primers

PCR Primer
(F):5'- GACTAGAAACGTCTCCGACC -3'
(R):5'- CCATATATGCCAGCATGTGATATC -3'

Sequencing Primer
(F):5'- CGACCTGGGGCTGTTCATTAAAAG -3'
(R):5'- GCCAGCATGTGATATCATACTTGC -3'

Posted On

2014-09-17