Incidental Mutation 'R2124:Zmym1'
ID 229645
Institutional Source Beutler Lab
Gene Symbol Zmym1
Ensembl Gene ENSMUSG00000043872
Gene Name zinc finger, MYM domain containing 1
Synonyms 5830412B09Rik
MMRRC Submission 040127-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.211) question?
Stock # R2124 (G1)
Quality Score 225
Status Validated
Chromosome 4
Chromosomal Location 126940887-126954945 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 126943363 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 244 (T244A)
Ref Sequence ENSEMBL: ENSMUSP00000101705 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000055013] [ENSMUST00000106099] [ENSMUST00000106102] [ENSMUST00000136186]
AlphaFold Q3TJB1
Predicted Effect probably benign
Transcript: ENSMUST00000055013
AA Change: T342A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000050669
Gene: ENSMUSG00000043872
AA Change: T342A

DomainStartEndE-ValueType
Pfam:zf-FCS 6 46 2.4e-8 PFAM
Pfam:zf-FCS 53 96 1.6e-10 PFAM
low complexity region 155 168 N/A INTRINSIC
low complexity region 229 243 N/A INTRINSIC
Pfam:DUF4371 335 569 4.9e-55 PFAM
Pfam:Dimer_Tnp_hAT 870 959 5.1e-18 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000106099
AA Change: T244A

PolyPhen 2 Score 0.048 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000101705
Gene: ENSMUSG00000043872
AA Change: T244A

DomainStartEndE-ValueType
Pfam:zf-FCS 6 46 3.3e-9 PFAM
Pfam:zf-FCS 53 96 4.6e-10 PFAM
low complexity region 155 168 N/A INTRINSIC
Pfam:DUF4371 237 471 2.8e-52 PFAM
Pfam:Dimer_Tnp_hAT 772 861 5.3e-18 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000106102
AA Change: T342A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000101708
Gene: ENSMUSG00000043872
AA Change: T342A

DomainStartEndE-ValueType
Pfam:zf-FCS 6 46 7.8e-9 PFAM
Pfam:zf-FCS 53 96 1.1e-9 PFAM
low complexity region 155 168 N/A INTRINSIC
low complexity region 229 243 N/A INTRINSIC
Pfam:DUF4371 335 569 7.4e-52 PFAM
Pfam:Dimer_Tnp_hAT 870 959 1.7e-17 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000117934
Predicted Effect noncoding transcript
Transcript: ENSMUST00000124429
Predicted Effect probably benign
Transcript: ENSMUST00000136186
SMART Domains Protein: ENSMUSP00000120772
Gene: ENSMUSG00000043872

DomainStartEndE-ValueType
Pfam:zf-FCS 6 46 1.5e-10 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000140605
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137236
Predicted Effect noncoding transcript
Transcript: ENSMUST00000152607
Meta Mutation Damage Score 0.0651 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.2%
Validation Efficiency 98% (80/82)
Allele List at MGI
Other mutations in this stock
Total: 78 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933430I17Rik T A 4: 62,457,109 (GRCm39) L143M possibly damaging Het
Abca13 T C 11: 9,259,013 (GRCm39) probably benign Het
Abcg5 T A 17: 84,978,575 (GRCm39) E294D probably benign Het
Adgrg6 T C 10: 14,342,930 (GRCm39) D339G probably damaging Het
Ahctf1 C A 1: 179,597,017 (GRCm39) R43L probably damaging Het
Ambn T A 5: 88,608,617 (GRCm39) probably benign Het
Arap3 A C 18: 38,106,403 (GRCm39) L1480R probably damaging Het
Arhgef10 A G 8: 14,984,820 (GRCm39) D200G probably damaging Het
Aspg G A 12: 112,087,608 (GRCm39) V8I probably benign Het
Aven T A 2: 112,455,541 (GRCm39) W26R probably damaging Het
Car4 T A 11: 84,854,911 (GRCm39) probably benign Het
Cd163 C T 6: 124,295,815 (GRCm39) R720C probably damaging Het
Cdh1 A G 8: 107,390,842 (GRCm39) I653V probably benign Het
Cdh3 A T 8: 107,279,520 (GRCm39) H712L probably damaging Het
Cdr2 T C 7: 120,581,250 (GRCm39) E9G probably damaging Het
Cfap47 T C X: 78,553,927 (GRCm39) I267V probably benign Het
Chrnb2 T C 3: 89,676,648 (GRCm39) probably benign Het
Col4a2 C A 8: 11,466,070 (GRCm39) P443Q probably damaging Het
Cyp2a12 A G 7: 26,736,071 (GRCm39) *493W probably null Het
Ddias T C 7: 92,507,464 (GRCm39) Q817R probably benign Het
Ddx6 C T 9: 44,535,816 (GRCm39) Q182* probably null Het
Dhrs7 A G 12: 72,699,951 (GRCm39) I227T probably damaging Het
Dhx8 A T 11: 101,653,071 (GRCm39) M970L probably damaging Het
Dnah7a A T 1: 53,536,101 (GRCm39) D2647E possibly damaging Het
Dstyk G A 1: 132,380,857 (GRCm39) G451R possibly damaging Het
Ednrb T A 14: 104,059,204 (GRCm39) D274V probably benign Het
Efl1 C T 7: 82,342,121 (GRCm39) R510C probably damaging Het
Eif4g3 A G 4: 137,912,053 (GRCm39) E1409G probably damaging Het
Fam78b G A 1: 166,906,278 (GRCm39) V146M probably damaging Het
Fcgbp T C 7: 27,791,444 (GRCm39) Y902H probably benign Het
Fgf18 A C 11: 33,068,003 (GRCm39) F129C probably damaging Het
Gbp9 T A 5: 105,242,409 (GRCm39) D110V probably damaging Het
Gm10477 A G X: 55,570,192 (GRCm39) K31E probably damaging Het
Gm10542 T A 18: 44,334,355 (GRCm39) W9R probably null Het
Gpaa1 A G 15: 76,217,552 (GRCm39) Y330C probably damaging Het
Hectd4 T C 5: 121,456,702 (GRCm39) L689P probably damaging Het
Hoxd3 C A 2: 74,574,578 (GRCm39) P75T possibly damaging Het
Ikbkb A G 8: 23,156,036 (GRCm39) L570P probably damaging Het
Ikbkb T C 8: 23,157,233 (GRCm39) probably benign Het
Il1rap A T 16: 26,529,315 (GRCm39) H379L probably damaging Het
Ints6l T A X: 55,550,228 (GRCm39) S718T probably benign Het
Jaml T A 9: 45,012,362 (GRCm39) I283N probably damaging Het
Kidins220 G A 12: 25,091,302 (GRCm39) probably null Het
Kif1b T C 4: 149,306,753 (GRCm39) D869G probably benign Het
Loxl2 T C 14: 69,929,859 (GRCm39) Y746H probably benign Het
Ltbr A G 6: 125,286,440 (GRCm39) S249P probably benign Het
Mageb5 A G X: 90,823,701 (GRCm39) I226T probably damaging Het
Msantd2 C T 9: 37,434,227 (GRCm39) R357W probably damaging Het
Mtcl2 T C 2: 156,875,245 (GRCm39) E835G probably damaging Het
Neb A G 2: 52,154,076 (GRCm39) F2345S probably damaging Het
Or7e173 T G 9: 19,938,797 (GRCm39) I146L probably benign Het
Pabpc4l T C 3: 46,401,276 (GRCm39) T123A probably benign Het
Plekhg4 TAGTCGATGCCCGAGTC TAGTC 8: 106,103,084 (GRCm39) probably benign Het
Prkdc T C 16: 15,537,297 (GRCm39) V1716A probably benign Het
Prss37 G A 6: 40,492,294 (GRCm39) R186* probably null Het
Psg20 T A 7: 18,414,947 (GRCm39) Y316F probably benign Het
Rasgrp2 T A 19: 6,454,425 (GRCm39) M156K probably benign Het
Rims1 T A 1: 22,474,732 (GRCm39) R200* probably null Het
Rnf168 T G 16: 32,097,036 (GRCm39) L37R probably damaging Het
Sall3 C T 18: 81,015,012 (GRCm39) G972D probably benign Het
Sap18 T A 14: 58,036,011 (GRCm39) S66T probably damaging Het
Scamp5 C A 9: 57,354,508 (GRCm39) V49F possibly damaging Het
Sdk1 C A 5: 142,170,943 (GRCm39) D1935E possibly damaging Het
Setd2 A G 9: 110,378,932 (GRCm39) S632G probably benign Het
Syt16 T A 12: 74,285,009 (GRCm39) S401T probably damaging Het
Tas2r106 A T 6: 131,655,317 (GRCm39) L178H probably damaging Het
Tbcd A G 11: 121,494,146 (GRCm39) Y983C probably damaging Het
Tenm3 A G 8: 48,870,041 (GRCm39) probably null Het
Tll1 T C 8: 64,538,591 (GRCm39) E351G probably benign Het
Tmem44 T A 16: 30,366,262 (GRCm39) K55* probably null Het
Top2a T C 11: 98,895,054 (GRCm39) I849V probably benign Het
Ttn A G 2: 76,624,792 (GRCm39) V13516A probably damaging Het
Uxs1 A G 1: 43,814,006 (GRCm39) L77P probably damaging Het
Vmn2r121 A T X: 123,043,439 (GRCm39) probably null Het
Vmn2r84 A C 10: 130,227,100 (GRCm39) M246R probably damaging Het
Vps13b T A 15: 35,646,226 (GRCm39) N1443K probably benign Het
Wfdc6b C T 2: 164,459,363 (GRCm39) R142C probably benign Het
Zfp616 A G 11: 73,973,869 (GRCm39) probably null Het
Other mutations in Zmym1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01140:Zmym1 APN 4 126,943,435 (GRCm39) missense probably damaging 1.00
IGL02326:Zmym1 APN 4 126,941,553 (GRCm39) missense probably damaging 1.00
IGL02392:Zmym1 APN 4 126,942,256 (GRCm39) missense probably damaging 1.00
IGL02431:Zmym1 APN 4 126,941,557 (GRCm39) nonsense probably null
IGL02512:Zmym1 APN 4 126,942,465 (GRCm39) missense probably damaging 1.00
IGL03303:Zmym1 APN 4 126,942,927 (GRCm39) missense probably damaging 1.00
BB009:Zmym1 UTSW 4 126,944,578 (GRCm39) missense possibly damaging 0.77
BB019:Zmym1 UTSW 4 126,944,578 (GRCm39) missense possibly damaging 0.77
R0195:Zmym1 UTSW 4 126,941,704 (GRCm39) missense possibly damaging 0.85
R0266:Zmym1 UTSW 4 126,941,818 (GRCm39) missense possibly damaging 0.86
R0416:Zmym1 UTSW 4 126,952,613 (GRCm39) missense probably benign 0.00
R1374:Zmym1 UTSW 4 126,943,404 (GRCm39) missense probably damaging 1.00
R1480:Zmym1 UTSW 4 126,942,405 (GRCm39) missense probably damaging 0.99
R1704:Zmym1 UTSW 4 126,942,177 (GRCm39) missense probably damaging 1.00
R1806:Zmym1 UTSW 4 126,941,872 (GRCm39) missense probably damaging 1.00
R1815:Zmym1 UTSW 4 126,942,814 (GRCm39) missense possibly damaging 0.76
R2169:Zmym1 UTSW 4 126,947,996 (GRCm39) splice site probably null
R4027:Zmym1 UTSW 4 126,943,672 (GRCm39) missense probably benign 0.08
R4410:Zmym1 UTSW 4 126,941,897 (GRCm39) nonsense probably null
R4572:Zmym1 UTSW 4 126,944,628 (GRCm39) missense probably benign 0.39
R4788:Zmym1 UTSW 4 126,948,090 (GRCm39) missense probably benign 0.10
R5120:Zmym1 UTSW 4 126,945,230 (GRCm39) splice site probably null
R5130:Zmym1 UTSW 4 126,942,451 (GRCm39) missense probably damaging 1.00
R5615:Zmym1 UTSW 4 126,943,191 (GRCm39) missense probably damaging 1.00
R6190:Zmym1 UTSW 4 126,941,677 (GRCm39) missense probably damaging 0.99
R7426:Zmym1 UTSW 4 126,943,191 (GRCm39) missense possibly damaging 0.81
R7464:Zmym1 UTSW 4 126,952,728 (GRCm39) nonsense probably null
R7540:Zmym1 UTSW 4 126,942,550 (GRCm39) missense probably benign
R7779:Zmym1 UTSW 4 126,948,038 (GRCm39) missense probably benign
R7807:Zmym1 UTSW 4 126,941,667 (GRCm39) missense probably damaging 1.00
R7876:Zmym1 UTSW 4 126,941,496 (GRCm39) missense probably damaging 0.98
R7932:Zmym1 UTSW 4 126,944,578 (GRCm39) missense possibly damaging 0.77
R8183:Zmym1 UTSW 4 126,952,649 (GRCm39) missense probably benign 0.07
R8276:Zmym1 UTSW 4 126,948,051 (GRCm39) missense probably damaging 0.99
R8744:Zmym1 UTSW 4 126,945,165 (GRCm39) missense probably damaging 1.00
R8798:Zmym1 UTSW 4 126,943,664 (GRCm39) missense possibly damaging 0.90
R9199:Zmym1 UTSW 4 126,944,623 (GRCm39) missense possibly damaging 0.80
R9385:Zmym1 UTSW 4 126,952,683 (GRCm39) missense probably damaging 1.00
T0722:Zmym1 UTSW 4 126,943,466 (GRCm39) missense probably benign 0.05
T0722:Zmym1 UTSW 4 126,942,043 (GRCm39) missense probably benign 0.01
T0722:Zmym1 UTSW 4 126,941,740 (GRCm39) missense probably benign 0.00
T0975:Zmym1 UTSW 4 126,943,466 (GRCm39) missense probably benign 0.05
T0975:Zmym1 UTSW 4 126,942,043 (GRCm39) missense probably benign 0.01
T0975:Zmym1 UTSW 4 126,941,740 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- CAGCAAGCACTGTTTTCCAAG -3'
(R):5'- GGCTGTGTCTCTCAAAGTCC -3'

Sequencing Primer
(F):5'- AGCACTGTTTTCCAAGAAATAAAATG -3'
(R):5'- GTGTCTCTCAAAGTCCACATTAACAG -3'
Posted On 2014-09-17