Mutagenetix > Incidental Mutation

Incidental Mutation 'R2126:Sucla2'

229938

Institutional Source

Beutler Lab

Gene Symbol

Sucla2

Ensembl Gene

ENSMUSG00000022110

Gene Name

succinate-Coenzyme A ligase, ADP-forming, beta subunit

Synonyms

4930547K18Rik

MMRRC Submission

040129-MU

Accession Numbers

Genbank: NM_011506; MGI: 1306775

Essential gene?

Probably essential (E-score: 0.946) question?

Stock #

R2126 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

73525319-73596142 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 73592668 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 382 (M382L)

Ref Sequence

ENSEMBL: ENSMUSP00000123765 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022706] [ENSMUST00000160507]

AlphaFold

Q9Z2I9

Predicted Effect

possibly damaging
Transcript: ENSMUST00000022706
AA Change: M382L

PolyPhen 2 Score 0.715 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000022706
Gene: ENSMUSG00000022110
AA Change: M382L

Domain	Start	End	E-Value	Type
Pfam:ATP-grasp_5	44	277	1.6e-11	PFAM
Pfam:ATP-grasp_2	54	262	9.2e-78	PFAM
Pfam:Ligase_CoA	321	441	2.2e-29	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159165

Predicted Effect

possibly damaging
Transcript: ENSMUST00000160507
AA Change: M382L

PolyPhen 2 Score 0.715 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000123765
Gene: ENSMUSG00000022110
AA Change: M382L

Domain	Start	End	E-Value	Type
Pfam:ATP-grasp_5	44	277	3e-11	PFAM
Pfam:ATP-grasp_2	54	262	9.5e-77	PFAM
Pfam:Ligase_CoA	321	441	2.2e-29	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161082

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Succinyl-CoA synthetase (SCS) is a mitochondrial matrix enzyme that acts as a heterodimer, being composed of an invariant alpha subunit and a substrate-specific beta subunit. The protein encoded by this gene is an ATP-specific SCS beta subunit that dimerizes with the SCS alpha subunit to form SCS-A, an essential component of the tricarboxylic acid cycle. SCS-A hydrolyzes ATP to convert succinate to succinyl-CoA. Defects in this gene are a cause of myopathic mitochondrial DNA depletion syndrome. A pseudogene of this gene has been found on chromosome 6. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a gene trap allele exhibit perinatal lethality with reduced size, placenta mineralization, decreased mitochondrial DNA and respiration. [provided by MGI curators]

Allele List at MGI

All alleles(7) : Targeted, other(2) Gene trapped(5)

Other mutations in this stock

Total: 116 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadac	A	G	3: 60,039,645	T255A	possibly damaging	Het
Acat3	C	T	17: 12,927,407	A230T	probably benign	Het
Acsl1	C	A	8: 46,533,626	P650Q	probably benign	Het
Adgrl3	T	A	5: 81,512,536	I316N	probably damaging	Het
Agrp	G	T	8: 105,566,835	T106K	probably damaging	Het
AI429214	T	A	8: 36,994,208	V170E	probably benign	Het
Akap13	G	A	7: 75,725,304	G1895S	possibly damaging	Het
Alpk2	G	A	18: 65,350,368	Q190*	probably null	Het
Aox3	C	A	1: 58,158,216	Q574K	probably benign	Het
Apeh	A	G	9: 108,085,667	Y702H	probably damaging	Het
Aqp11	A	G	7: 97,737,485	I151T	probably benign	Het
Arhgap28	A	G	17: 67,869,015	V363A	possibly damaging	Het
Arhgef18	A	G	8: 3,451,939	N699S	probably damaging	Het
Asnsd1	A	G	1: 53,347,317	S384P	probably benign	Het
Atl1	G	T	12: 69,931,657		probably null	Het
Atp13a2	A	T	4: 140,995,391	D203V	possibly damaging	Het
Axdnd1	A	T	1: 156,333,214	N164K	probably benign	Het
Bnipl	T	A	3: 95,245,683	I162F	probably damaging	Het
Cacna1d	A	T	14: 30,123,163	L655I	probably damaging	Het
Canx	T	C	11: 50,304,358	I294M	probably damaging	Het
Casz1	T	C	4: 148,946,064	F1180S	probably damaging	Het
Cav3	T	C	6: 112,472,383	Y121H	probably benign	Het
Cd4	A	C	6: 124,870,536	S222A	probably benign	Het
Cds1	T	C	5: 101,812,550	I289T	probably benign	Het
Cep112	T	C	11: 108,508,258	F328L	probably damaging	Het
Ces4a	G	A	8: 105,138,097	G69S	probably damaging	Het
Cfap44	A	T	16: 44,410,475	D273V	probably benign	Het
Clec7a	C	T	6: 129,470,955	G49D	probably benign	Het
Col22a1	G	A	15: 71,857,253	Q599*	probably null	Het
Col6a5	T	A	9: 105,945,600	H186L	unknown	Het
Dclk2	C	T	3: 86,805,639	R503Q	possibly damaging	Het
Dnah12	A	T	14: 26,724,458	R725*	probably null	Het
Dnajc10	G	A	2: 80,350,734		probably null	Het
Edem3	A	T	1: 151,794,731	H337L	possibly damaging	Het
Eif2ak4	A	T	2: 118,422,123	H392L	probably benign	Het
Ercc6l2	G	A	13: 63,848,771	V365I	probably damaging	Het
Fam129a	A	C	1: 151,696,135	E277A	probably damaging	Het
Fam129a	A	G	1: 151,709,133	I494V	possibly damaging	Het
Fan1	T	C	7: 64,346,888	E978G	probably damaging	Het
Fcrl6	C	T	1: 172,599,248	V44M	probably benign	Het
Gaa	G	A	11: 119,270,282	W50*	probably null	Het
Gm10032	T	C	14: 66,792,778		noncoding transcript	Het
Gm10985	CTCTAT	CT	3: 53,845,249		probably null	Het
Gprc5b	G	T	7: 118,984,175	P157Q	probably damaging	Het
Gsdmc3	G	A	15: 63,858,534	Q394*	probably null	Het
Gucd1	A	G	10: 75,512,088	S38P	probably damaging	Het
Higd1a	A	T	9: 121,850,247	I58N	probably damaging	Het
Hmx3	G	C	7: 131,544,549	V329L	possibly damaging	Het
Hnrnpul2	A	T	19: 8,824,438	R337*	probably null	Het
Idua	T	A	5: 108,681,438	H368Q	possibly damaging	Het
Ifih1	A	G	2: 62,623,467	V218A	probably benign	Het
Ip6k1	G	A	9: 108,040,996	E77K	possibly damaging	Het
Kif1b	G	A	4: 149,187,640	S1568L	possibly damaging	Het
Klhl30	T	A	1: 91,358,777		probably null	Het
Lasp1	T	A	11: 97,836,134	D227E	probably benign	Het
Lhx6	A	G	2: 36,091,324	I85T	possibly damaging	Het
Limch1	A	G	5: 67,029,760	D840G	probably damaging	Het
Loxl4	C	G	19: 42,603,963	E385D	probably damaging	Het
Lrrtm4	A	T	6: 80,021,739	I44F	probably damaging	Het
Ltbp2	T	C	12: 84,785,709		probably null	Het
Lyg1	T	C	1: 37,950,674	Y44C	probably damaging	Het
Maats1	T	C	16: 38,341,762	T6A	probably benign	Het
Map1a	A	G	2: 121,298,641	I129V	probably damaging	Het
Med27	C	T	2: 29,524,430	Q150*	probably null	Het
Ms4a5	A	T	19: 11,279,368	I55N	probably damaging	Het
Muc5ac	T	C	7: 141,810,742	S2597P	possibly damaging	Het
Mxd1	A	C	6: 86,651,440		probably null	Het
Myo3a	A	G	2: 22,578,174	D480G	probably benign	Het
Neb	T	C	2: 52,310,638	Y343C	probably damaging	Het
Nrn1	A	C	13: 36,730,206	V34G	probably damaging	Het
Olfr1090	A	T	2: 86,754,452	N95K	probably benign	Het
Olfr1099	T	C	2: 86,959,098	Y120C	possibly damaging	Het
Olfr1302	A	G	2: 111,780,496	M59V	probably damaging	Het
Olfr679	A	G	7: 105,086,615	T300A	probably damaging	Het
Olfr690	C	T	7: 105,329,252	W313*	probably null	Het
Olfr722	A	G	14: 49,895,067	I245T	probably benign	Het
Olfr887	G	T	9: 38,085,276	V147L	probably benign	Het
Pdia4	A	T	6: 47,796,837	V526E	probably damaging	Het
Pdia6	T	C	12: 17,278,545	V167A	probably damaging	Het
Pgk2	A	G	17: 40,207,509	F343L	probably damaging	Het
Piwil1	T	C	5: 128,754,096	V827A	probably damaging	Het
Plag1	A	T	4: 3,904,169	Y341N	possibly damaging	Het
Plch2	T	C	4: 154,998,999	E393G	probably damaging	Het
Ptprg	T	A	14: 12,154,355	M692K	probably benign	Het
Rassf8	G	A	6: 145,815,182	R78H	probably benign	Het
Rif1	GCCACCA	GCCA	2: 52,110,324		probably benign	Het
Rnf213	A	G	11: 119,450,201	Q3556R	probably damaging	Het
Rpa2	T	C	4: 132,768,788		probably null	Het
Rpe	T	G	1: 66,715,980	F174V	possibly damaging	Het
Sbf2	T	C	7: 110,560,295	D36G	probably damaging	Het
Scn2a	T	A	2: 65,752,079	Y1590*	probably null	Het
Slc24a4	T	C	12: 102,222,759	V151A	probably damaging	Het
Slc30a8	A	T	15: 52,295,934	M17L	probably benign	Het
Slit3	T	C	11: 35,688,679	Y1228H	probably damaging	Het
Smad4	G	A	18: 73,662,744	T193M	probably benign	Het
Smtn	T	A	11: 3,530,045	H392L	probably benign	Het
St8sia3	A	G	18: 64,269,674	D128G	probably damaging	Het
Tbx5	A	G	5: 119,836,923	T4A	probably benign	Het
Tdrd5	T	C	1: 156,276,573	R528G	probably damaging	Het
Tex44	T	C	1: 86,427,089	L240P	probably benign	Het
Tns4	A	T	11: 99,080,078		probably null	Het
Trappc10	A	T	10: 78,203,924	V731E	possibly damaging	Het
Ttf1	A	G	2: 29,071,345	K582E	probably damaging	Het
Ttf2	C	A	3: 100,948,193	Q895H	possibly damaging	Het
Ttll6	A	G	11: 96,147,532	E402G	probably damaging	Het
Ttn	A	T	2: 76,890,092		probably null	Het
Ugt8a	T	C	3: 125,875,546	D303G	probably damaging	Het
Ulk1	G	T	5: 110,792,436	A373D	probably benign	Het
Vmn2r13	A	G	5: 109,158,192	S507P	probably benign	Het
Vmn2r19	T	A	6: 123,316,074	D358E	possibly damaging	Het
Vmn2r88	T	C	14: 51,413,807	S201P	probably benign	Het
Zfp36l2	A	G	17: 84,186,975	F78S	probably damaging	Het
Zfp454	A	C	11: 50,873,995	S203R	probably benign	Het
Zfp616	C	A	11: 74,085,403	Q833K	probably benign	Het
Znhit2	A	G	19: 6,062,061	T279A	probably benign	Het
Zswim3	T	A	2: 164,819,993	I131N	probably benign	Het

Other mutations in Sucla2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00973:Sucla2	APN	14	73590907	missense	possibly damaging	0.81
IGL01539:Sucla2	APN	14	73591121	missense	probably damaging	0.97
IGL02064:Sucla2	APN	14	73579473	nonsense	probably null
IGL02240:Sucla2	APN	14	73590847	missense	probably damaging	1.00
IGL02640:Sucla2	APN	14	73581806	missense	probably benign	0.45
IGL02965:Sucla2	APN	14	73579431	missense	probably benign	0.00
3-1:Sucla2	UTSW	14	73568957	nonsense	probably null
PIT4812001:Sucla2	UTSW	14	73579449	missense	possibly damaging	0.89
R0189:Sucla2	UTSW	14	73592648	missense	probably damaging	1.00
R0764:Sucla2	UTSW	14	73560634	unclassified	probably benign
R0765:Sucla2	UTSW	14	73560634	unclassified	probably benign
R0844:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1065:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1067:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1136:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1162:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1311:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1312:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1345:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1416:Sucla2	UTSW	14	73560634	unclassified	probably benign
R1677:Sucla2	UTSW	14	73592681	missense	probably damaging	1.00
R1968:Sucla2	UTSW	14	73593679	missense	probably damaging	0.99
R2484:Sucla2	UTSW	14	73581709	missense	probably benign	0.12
R2566:Sucla2	UTSW	14	73552804	intron	probably benign
R3706:Sucla2	UTSW	14	73591052	missense	probably damaging	1.00
R4725:Sucla2	UTSW	14	73568989	missense	possibly damaging	0.94
R5620:Sucla2	UTSW	14	73595396	missense	probably damaging	0.99
R5650:Sucla2	UTSW	14	73591129	missense	probably benign	0.38
R5947:Sucla2	UTSW	14	73592669	missense	probably damaging	1.00
R6045:Sucla2	UTSW	14	73568964	nonsense	probably null
R6236:Sucla2	UTSW	14	73593750	missense	probably benign	0.39
R6693:Sucla2	UTSW	14	73568667	nonsense	probably null
R7706:Sucla2	UTSW	14	73568993	missense	probably damaging	1.00
R8786:Sucla2	UTSW	14	73560465	missense	probably benign	0.13
R9055:Sucla2	UTSW	14	73581628	intron	probably benign
R9064:Sucla2	UTSW	14	73590863	missense	probably benign
R9380:Sucla2	UTSW	14	73590872	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GGAAGTCTGGCTTACAAGGTTTC -3'
(R):5'- CCCTTACAACTGCATCACTGAG -3'

Sequencing Primer
(F):5'- GAAATGAGTAGTTGTAAGTCCTGG -3'
(R):5'- CAACTGCATCACTGAGAGAATTAG -3'

Posted On

2014-09-17