Mutagenetix > Incidental Mutation

Incidental Mutation 'R2101:Hmbox1'

230526

Institutional Source

Beutler Lab

Gene Symbol

Hmbox1

Ensembl Gene

ENSMUSG00000021972

Gene Name

homeobox containing 1

Synonyms

F830020C16Rik

MMRRC Submission

040105-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.811) question?

Stock #

R2101 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

65049049-65187320 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 65066028 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022544] [ENSMUST00000067843] [ENSMUST00000175744] [ENSMUST00000175905] [ENSMUST00000176128] [ENSMUST00000176489] [ENSMUST00000176832]

AlphaFold

Q8BJA3

Predicted Effect

probably benign
Transcript: ENSMUST00000022544

SMART Domains

Protein: ENSMUSP00000022544
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	2.3e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000067843

SMART Domains

Protein: ENSMUSP00000066905
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	2.5e-15	PFAM
HOX	267	344	8.74e-9	SMART
low complexity region	372	385	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000175744

SMART Domains

Protein: ENSMUSP00000135272
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART
low complexity region	382	404	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000175905

SMART Domains

Protein: ENSMUSP00000135657
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.5e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000176128

SMART Domains

Protein: ENSMUSP00000135448
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	25	227	4.4e-66	PFAM
HOX	267	344	6.18e-9	SMART
low complexity region	373	386	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000176489

SMART Domains

Protein: ENSMUSP00000134824
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.1e-15	PFAM
HOX	267	355	1.89e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000176832

SMART Domains

Protein: ENSMUSP00000135211
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000177326

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.6%

Validation Efficiency

100% (67/67)

MGI Phenotype

PHENOTYPE: Mice homozygous for a gene trapped allele exhibit absence of TERT binding to chromatin as shown by subcellular fractionation analysis of mouse embryonic fibroblasts. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abtb2	G	A	2: 103,397,207 (GRCm39)	A46T	probably benign	Het
Agap3	T	A	5: 24,692,797 (GRCm39)	L47Q	probably damaging	Het
Apaf1	T	G	10: 90,895,942 (GRCm39)	I377L	probably benign	Het
Astn2	G	A	4: 65,499,923 (GRCm39)	R937*	probably null	Het
Cacnb1	A	C	11: 97,896,554 (GRCm39)	V369G	probably damaging	Het
Cdc42bpa	G	T	1: 179,974,533 (GRCm39)	V1464L	probably benign	Het
Cdkn2aip	A	T	8: 48,166,036 (GRCm39)	M90K	probably damaging	Het
Chd3	A	T	11: 69,239,877 (GRCm39)	D1650E	probably benign	Het
Chd9	C	T	8: 91,760,615 (GRCm39)	P2120L	probably benign	Het
Clca3a2	T	C	3: 144,783,699 (GRCm39)	T639A	probably damaging	Het
Cluh	G	T	11: 74,551,328 (GRCm39)		probably benign	Het
Cnga1	C	T	5: 72,776,404 (GRCm39)	V20I	possibly damaging	Het
Col11a2	A	T	17: 34,271,143 (GRCm39)	D528V	probably damaging	Het
Cyfip2	A	G	11: 46,133,270 (GRCm39)	L810P	probably damaging	Het
D430041D05Rik	A	G	2: 103,979,175 (GRCm39)	V2084A	probably damaging	Het
Dcc	G	A	18: 71,943,941 (GRCm39)	H237Y	possibly damaging	Het
Ddx60	T	A	8: 62,393,679 (GRCm39)	F38L	probably damaging	Het
Dio2	T	C	12: 90,696,597 (GRCm39)	*130W	probably null	Het
Dock5	G	T	14: 68,031,459 (GRCm39)	F990L	probably benign	Het
Dpy19l1	A	T	9: 24,393,331 (GRCm39)	V146E	probably damaging	Het
Dscam	T	C	16: 96,411,549 (GRCm39)	T1776A	probably benign	Het
Enpep	C	T	3: 129,092,587 (GRCm39)	S532N	probably benign	Het
Gdf6	A	G	4: 9,860,025 (GRCm39)	D369G	probably damaging	Het
Gtf2b	T	C	3: 142,477,144 (GRCm39)		probably benign	Het
Hps3	C	A	3: 20,066,947 (GRCm39)	V540F	possibly damaging	Het
Hsd3b6	T	A	3: 98,713,553 (GRCm39)	I249F	possibly damaging	Het
Hunk	T	A	16: 90,229,388 (GRCm39)		probably null	Het
Kidins220	T	A	12: 25,107,422 (GRCm39)	L1625Q	probably damaging	Het
Krt1	C	T	15: 101,754,622 (GRCm39)	G543S	unknown	Het
Myo10	T	A	15: 25,722,345 (GRCm39)	L186Q	probably benign	Het
N4bp2	T	A	5: 65,948,224 (GRCm39)	W285R	probably damaging	Het
Nat8l	T	C	5: 34,155,716 (GRCm39)	L124P	probably damaging	Het
Nemp2	T	C	1: 52,680,225 (GRCm39)		probably null	Het
Nkain2	G	A	10: 32,205,813 (GRCm39)	T74I	possibly damaging	Het
Nol4	A	G	18: 22,956,466 (GRCm39)	S239P	probably damaging	Het
Or4c118	T	A	2: 88,975,301 (GRCm39)	E22V	probably benign	Het
Pcbp3	T	C	10: 76,625,589 (GRCm39)	I152V	possibly damaging	Het
Pcp4l1	G	T	1: 171,003,174 (GRCm39)	P10Q	probably damaging	Het
Pla1a	T	C	16: 38,235,730 (GRCm39)	N135D	probably damaging	Het
Plb1	T	A	5: 32,507,004 (GRCm39)	M1193K	probably damaging	Het
Prc1	T	C	7: 79,962,032 (GRCm39)	V73A	probably benign	Het
Prkd2	T	A	7: 16,603,490 (GRCm39)	W807R	probably damaging	Het
Prp2rt	G	T	13: 97,235,730 (GRCm39)	R6S	probably damaging	Het
Ptprb	C	T	10: 116,150,943 (GRCm39)		probably benign	Het
Rb1cc1	A	G	1: 6,319,559 (GRCm39)	I993V	probably benign	Het
Rbp3	C	T	14: 33,677,975 (GRCm39)	T641M	probably damaging	Het
Rev3l	T	C	10: 39,704,092 (GRCm39)	V2046A	probably benign	Het
Rnpep	G	T	1: 135,199,355 (GRCm39)	N334K	probably damaging	Het
Sarm1	G	A	11: 78,366,115 (GRCm39)	P695S	probably damaging	Het
Sf3a3	C	T	4: 124,612,136 (GRCm39)	T131I	possibly damaging	Het
Slc38a10	A	T	11: 120,023,567 (GRCm39)	V283E	probably damaging	Het
Slco6c1	A	T	1: 97,000,595 (GRCm39)	L552*	probably null	Het
Tas2r136	T	C	6: 132,754,495 (GRCm39)	M211V	probably benign	Het
Tax1bp3	G	A	11: 73,071,947 (GRCm39)	D65N	probably damaging	Het
Tdrd5	A	G	1: 156,129,209 (GRCm39)	F167S	probably damaging	Het
Tfeb	G	A	17: 48,100,590 (GRCm39)	V269M	probably damaging	Het
Tspan12	A	T	6: 21,799,887 (GRCm39)	F153L	probably benign	Het
Txnrd1	T	G	10: 82,717,573 (GRCm39)	L186V	probably damaging	Het
Upk1b	A	T	16: 38,600,499 (GRCm39)	C160*	probably null	Het
Uty	T	C	Y: 1,176,541 (GRCm39)	Q172R	probably damaging	Het
Vmn1r23	T	C	6: 57,903,437 (GRCm39)	K114E	possibly damaging	Het
Vmn2r99	T	G	17: 19,598,253 (GRCm39)	N92K	probably damaging	Het
Vstm2a	T	A	11: 16,213,191 (GRCm39)	M192K	probably benign	Het
Zc3h12c	A	G	9: 52,027,721 (GRCm39)	V547A	probably benign	Het
Zfp944	T	A	17: 22,558,809 (GRCm39)	N146I	probably benign	Het

Other mutations in Hmbox1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03183:Hmbox1	APN	14	65,125,048 (GRCm39)	missense	probably damaging	1.00
R0962:Hmbox1	UTSW	14	65,134,223 (GRCm39)	missense	probably benign	0.00
R1144:Hmbox1	UTSW	14	65,063,132 (GRCm39)	missense	probably damaging	1.00
R1467:Hmbox1	UTSW	14	65,099,027 (GRCm39)	missense	possibly damaging	0.90
R1467:Hmbox1	UTSW	14	65,099,027 (GRCm39)	missense	possibly damaging	0.90
R1856:Hmbox1	UTSW	14	65,066,097 (GRCm39)	missense	probably damaging	1.00
R3707:Hmbox1	UTSW	14	65,134,285 (GRCm39)	missense	probably benign	0.02
R4531:Hmbox1	UTSW	14	65,062,938 (GRCm39)	missense	probably benign
R4570:Hmbox1	UTSW	14	65,061,111 (GRCm39)	missense	possibly damaging	0.95
R4572:Hmbox1	UTSW	14	65,140,682 (GRCm39)	splice site	probably null
R4740:Hmbox1	UTSW	14	65,134,483 (GRCm39)	missense	probably damaging	1.00
R4807:Hmbox1	UTSW	14	65,062,998 (GRCm39)	intron	probably benign
R5112:Hmbox1	UTSW	14	65,063,061 (GRCm39)	missense	probably damaging	1.00
R5327:Hmbox1	UTSW	14	65,134,144 (GRCm39)	missense	possibly damaging	0.77
R5575:Hmbox1	UTSW	14	65,060,613 (GRCm39)	missense	probably benign
R5928:Hmbox1	UTSW	14	65,061,122 (GRCm39)	missense	possibly damaging	0.55
R6934:Hmbox1	UTSW	14	65,134,281 (GRCm39)	missense	probably benign	0.33
R7155:Hmbox1	UTSW	14	65,134,486 (GRCm39)	missense	probably damaging	1.00
R7302:Hmbox1	UTSW	14	65,066,115 (GRCm39)	missense	probably damaging	1.00
R7499:Hmbox1	UTSW	14	65,134,126 (GRCm39)	missense	possibly damaging	0.76
R8361:Hmbox1	UTSW	14	65,134,289 (GRCm39)	missense	possibly damaging	0.86
R8708:Hmbox1	UTSW	14	65,061,089 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CTCACAGAGCATACAATTTTAGAGC -3'
(R):5'- ACGCCAGAGTTGTCTCAAAG -3'

Sequencing Primer
(F):5'- GAGCATACAATTTTAGAGCAACTTTG -3'
(R):5'- CGCCAGAGTTGTCTCAAAGAAGAC -3'

Posted On

2014-09-18