Mutagenetix > Incidental Mutation

Incidental Mutation 'R2105:Cfap53'

230924

Institutional Source

Beutler Lab

Gene Symbol

Cfap53

Ensembl Gene

ENSMUSG00000035394

Gene Name

cilia and flagella associated protein 53

Synonyms

4933415I03Rik, Ccdc11

MMRRC Submission

040109-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.439) question?

Stock #

R2105 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

74283090-74359986 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 74283223 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 9 (V9A)

Ref Sequence

ENSEMBL: ENSMUSP00000135452 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000097530] [ENSMUST00000114895] [ENSMUST00000176435] [ENSMUST00000177101] [ENSMUST00000224047] [ENSMUST00000224332]

AlphaFold

Q9D439

Predicted Effect

probably benign
Transcript: ENSMUST00000097530

SMART Domains

Protein: ENSMUSP00000095137
Gene: ENSMUSG00000024561

Domain	Start	End	E-Value	Type
MBD	3	76	3.94e-27	SMART
low complexity region	82	97	N/A	INTRINSIC
low complexity region	123	153	N/A	INTRINSIC
Pfam:zf-CXXC	194	241	1.9e-13	PFAM
Pfam:zf-CXXC	243	288	1.2e-13	PFAM
low complexity region	358	368	N/A	INTRINSIC
low complexity region	513	527	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114895
AA Change: V9A

PolyPhen 2 Score 0.150 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000110545
Gene: ENSMUSG00000035394
AA Change: V9A

Domain	Start	End	E-Value	Type
low complexity region	131	145	N/A	INTRINSIC
Pfam:TPH	160	495	1.3e-20	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000176435
AA Change: V9A

PolyPhen 2 Score 0.732 (Sensitivity: 0.86; Specificity: 0.92)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000177101
AA Change: V9A

PolyPhen 2 Score 0.732 (Sensitivity: 0.86; Specificity: 0.92)

Predicted Effect

probably benign
Transcript: ENSMUST00000224047

Predicted Effect

probably benign
Transcript: ENSMUST00000224332

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the CFAP53 family. It was found to be differentially expressed by the ciliated cells of frog epidermis and in skin fibroblasts from human. Mutations in this gene are associated with visceral heterotaxy-6, which implicates this gene in determination of left-right asymmetric patterning. [provided by RefSeq, Aug 2015]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	C	T	6: 121,673,500	P1189L	probably benign	Het
Acbd4	G	A	11: 103,104,439	D57N	probably damaging	Het
Acot4	A	T	12: 84,038,742	M78L	probably damaging	Het
Ago1	A	T	4: 126,461,788	M76K	probably benign	Het
Agrn	G	T	4: 156,177,299	Y511*	probably null	Het
Arhgef15	A	T	11: 68,947,681		probably null	Het
Atp1a3	A	T	7: 24,989,853	M594K	probably damaging	Het
Atp4a	G	A	7: 30,720,368		probably null	Het
Bckdk	T	A	7: 127,907,317	I272N	probably damaging	Het
Bod1l	A	G	5: 41,832,279	V367A	probably benign	Het
C1galt1c1	T	C	X: 38,631,268	M284V	possibly damaging	Het
Cenpk	T	A	13: 104,229,597	C4*	probably null	Het
Chil3	T	C	3: 106,160,478	I124V	possibly damaging	Het
Creld2	G	A	15: 88,820,631	W103*	probably null	Het
Cyp2c67	T	C	19: 39,626,237	Y282C	probably benign	Het
D5Ertd579e	C	T	5: 36,613,449	A1201T	probably benign	Het
Dock4	A	G	12: 40,692,989	H381R	probably benign	Het
Drc1	C	T	5: 30,356,441	S447F	probably benign	Het
Fam83g	G	T	11: 61,703,458	R606L	probably benign	Het
Fmnl1	A	C	11: 103,194,692	S688R	probably benign	Het
Fryl	C	T	5: 73,122,299	V219I	probably benign	Het
Gm13101	A	T	4: 143,965,820	Y204N	probably benign	Het
Golgb1	T	A	16: 36,914,664	N1424K	probably benign	Het
Gpr39	T	C	1: 125,677,884	V183A	possibly damaging	Het
H2-T22	A	T	17: 36,040,517	Y274N	probably benign	Het
Hif1a	T	A	12: 73,937,745	Y313N	probably damaging	Het
Hip1r	T	A	5: 124,000,204	M787K	probably damaging	Het
Hipk3	T	C	2: 104,439,392	E484G	probably damaging	Het
Hsh2d	T	A	8: 72,200,646	F291I	probably benign	Het
Ino80	T	C	2: 119,431,929	E692G	probably null	Het
Itgam	T	A	7: 128,081,712	V271D	probably damaging	Het
Kansl1	A	C	11: 104,335,559	I924S	probably damaging	Het
Kcnq2	A	G	2: 181,081,352	C628R	probably benign	Het
Krt78	A	C	15: 101,947,414	V654G	possibly damaging	Het
Lrit2	A	G	14: 37,071,956	T326A	probably damaging	Het
Ltk	T	C	2: 119,752,088	E710G	probably damaging	Het
Lysmd1	T	C	3: 95,134,974	L53S	probably damaging	Het
Mc4r	T	C	18: 66,859,598	Y148C	probably damaging	Het
Mfn2	G	A	4: 147,888,705	Q172*	probably null	Het
Mknk2	A	G	10: 80,668,601	L242P	possibly damaging	Het
Mrpl45	A	T	11: 97,325,747	H167L	probably benign	Het
Myc	T	C	15: 61,988,102	V208A	probably damaging	Het
Myh7b	A	G	2: 155,629,457	E1175G	probably benign	Het
Myo18a	A	T	11: 77,850,234	M1456L	probably benign	Het
Myocd	G	A	11: 65,218,658	Q96*	probably null	Het
Nckap5	T	A	1: 126,026,518	I766F	probably damaging	Het
Ndst1	T	C	18: 60,691,253	E784G	probably benign	Het
Nf1	A	T	11: 79,469,826	R1443S	possibly damaging	Het
Nhlrc3	A	G	3: 53,453,651	W228R	probably damaging	Het
Nup107	G	A	10: 117,773,320	T378I	probably damaging	Het
Olfr1033	C	T	2: 86,041,330	T5I	probably damaging	Het
Olfr1131	A	G	2: 87,628,939	T159A	probably benign	Het
Olfr293	A	T	7: 86,664,383	K240N	probably damaging	Het
Olfr524	T	A	7: 140,202,743	D9V	probably benign	Het
Olfr607	T	A	7: 103,460,273		probably null	Het
Olfr98	A	T	17: 37,263,073	M197K	probably benign	Het
Otop1	A	G	5: 38,300,458	D520G	probably benign	Het
Papln	C	T	12: 83,780,236	P712S	probably benign	Het
Pcbd2	T	A	13: 55,733,033	I34N	probably damaging	Het
Pkd1l3	T	A	8: 109,647,573	C29*	probably null	Het
Pou5f1	G	A	17: 35,510,002	V114M	probably benign	Het
Prpf4b	C	A	13: 34,884,231		probably benign	Het
Prr23a1	C	T	9: 98,842,656	P24S	probably damaging	Het
Ptch1	T	A	13: 63,545,245	M65L	probably benign	Het
Rc3h2	A	T	2: 37,399,624	I392K	possibly damaging	Het
Reck	G	T	4: 43,943,195	D916Y	probably damaging	Het
Rtf2	A	G	2: 172,445,365	D68G	probably damaging	Het
Ryr1	G	T	7: 29,090,150	T1513K	probably damaging	Het
Sacs	A	G	14: 61,173,441	D55G	possibly damaging	Het
Scn9a	A	G	2: 66,568,183	S28P	probably benign	Het
Scrn3	A	G	2: 73,329,852	M280V	probably damaging	Het
Snx29	C	T	16: 11,511,034	T559I	possibly damaging	Het
Spn	C	T	7: 127,136,241	E109K	probably damaging	Het
Sra1	C	T	18: 36,675,068	R369H	probably benign	Het
Srsf11	C	T	3: 158,019,345	A64T	probably damaging	Het
Stk17b	A	G	1: 53,776,605	S12P	probably benign	Het
Sult1d1	C	A	5: 87,559,802	G153V	probably damaging	Het
Sycp2	A	T	2: 178,350,138		probably null	Het
Tgfb3	T	C	12: 86,069,769	E165G	possibly damaging	Het
Tns2	C	A	15: 102,107,506	H160N	probably benign	Het
Ubn1	T	A	16: 5,077,224	C711*	probably null	Het
Usp13	A	T	3: 32,901,986	D469V	probably damaging	Het
Vmn1r231	A	T	17: 20,890,118	H178Q	possibly damaging	Het
Vwa1	A	G	4: 155,772,793	S183P	probably damaging	Het
Xpo7	A	G	14: 70,690,991	I424T	probably benign	Het
Zfp109	A	G	7: 24,236,616		probably null	Het

Other mutations in Cfap53

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00579:Cfap53	APN	18	74305540	nonsense	probably null
IGL00667:Cfap53	APN	18	74300192	missense	probably damaging	1.00
IGL00917:Cfap53	APN	18	74299296	missense	probably benign	0.08
R0009:Cfap53	UTSW	18	74299176	missense	probably benign	0.00
R0009:Cfap53	UTSW	18	74299176	missense	probably benign	0.00
R0035:Cfap53	UTSW	18	74300207	missense	probably damaging	1.00
R0035:Cfap53	UTSW	18	74300207	missense	probably damaging	1.00
R0048:Cfap53	UTSW	18	74299173	missense	probably benign	0.09
R0601:Cfap53	UTSW	18	74300150	missense	possibly damaging	0.94
R0939:Cfap53	UTSW	18	74305730	missense	probably null	0.72
R1166:Cfap53	UTSW	18	74300180	missense	possibly damaging	0.68
R1588:Cfap53	UTSW	18	74307373	missense	probably benign
R2186:Cfap53	UTSW	18	74329505	splice site	probably null
R3723:Cfap53	UTSW	18	74359569	missense	probably benign	0.13
R3724:Cfap53	UTSW	18	74359569	missense	probably benign	0.13
R3904:Cfap53	UTSW	18	74307374	missense	probably damaging	0.99
R5156:Cfap53	UTSW	18	74359767	utr 3 prime	probably benign
R5262:Cfap53	UTSW	18	74329459	missense	probably benign	0.39
R5928:Cfap53	UTSW	18	74359740	missense	possibly damaging	0.90
R6405:Cfap53	UTSW	18	74359606	missense	probably damaging	1.00
R6653:Cfap53	UTSW	18	74300209	missense	probably damaging	0.97
R6675:Cfap53	UTSW	18	74307376	critical splice donor site	probably null
R7011:Cfap53	UTSW	18	74329493	missense	probably benign	0.13
R7397:Cfap53	UTSW	18	74283223	missense	possibly damaging	0.73
R8943:Cfap53	UTSW	18	74299182	missense	probably damaging	0.97
R9132:Cfap53	UTSW	18	74283201	missense	probably damaging	0.98
R9159:Cfap53	UTSW	18	74283201	missense	probably damaging	0.98
R9389:Cfap53	UTSW	18	74299343	critical splice donor site	probably null
R9548:Cfap53	UTSW	18	74304969	missense	possibly damaging	0.59
R9679:Cfap53	UTSW	18	74359585	missense	possibly damaging	0.89
R9792:Cfap53	UTSW	18	74305670	missense	probably benign	0.44
R9793:Cfap53	UTSW	18	74305670	missense	probably benign	0.44
R9795:Cfap53	UTSW	18	74305670	missense	probably benign	0.44
Z1177:Cfap53	UTSW	18	74305552	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- AGATTGCTCTTACGGGCCAG -3'
(R):5'- CCAAGTGGTGATTATAGCTGGAAG -3'

Sequencing Primer
(F):5'- GCCAGAGACTAGGGACTACTTC -3'
(R):5'- TGCGGGTGTAATGGTAGACAG -3'

Posted On

2014-09-18