Mutagenetix > Incidental Mutation

Incidental Mutation 'R2117:Meis1'

231099

Institutional Source

Beutler Lab

Gene Symbol

Meis1

Ensembl Gene

ENSMUSG00000020160

Gene Name

Meis homeobox 1

Synonyms

C530044H18Rik

MMRRC Submission

040121-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R2117 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

18879817-19018985 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 18881679 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Proline to Glutamine at position 453 (P453Q)

Ref Sequence

ENSEMBL: ENSMUSP00000139219 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068264] [ENSMUST00000102878] [ENSMUST00000144988] [ENSMUST00000177417] [ENSMUST00000185131]

AlphaFold

Q60954

Predicted Effect

probably benign
Transcript: ENSMUST00000068264

SMART Domains

Protein: ENSMUSP00000069277
Gene: ENSMUSG00000020160

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
low complexity region	372	385	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102878

SMART Domains

Protein: ENSMUSP00000099942
Gene: ENSMUSG00000020160

Domain	Start	End	E-Value	Type
internal_repeat_1	12	59	8.66e-5	PROSPERO
Pfam:Meis_PKNOX_N	108	192	5.5e-48	PFAM
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
internal_repeat_1	384	428	8.66e-5	PROSPERO

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000118661

SMART Domains

Protein: ENSMUSP00000112809
Gene: ENSMUSG00000020160

Domain	Start	End	E-Value	Type
low complexity region	45	61	N/A	INTRINSIC
HOX	92	157	5.3e-14	SMART
low complexity region	192	205	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000144988

SMART Domains

Protein: ENSMUSP00000134969
Gene: ENSMUSG00000020160

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
low complexity region	358	369	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000177357

Predicted Effect

probably benign
Transcript: ENSMUST00000177417

SMART Domains

Protein: ENSMUSP00000135726
Gene: ENSMUSG00000020160

Domain	Start	End	E-Value	Type
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000185131
AA Change: P453Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000139219
Gene: ENSMUSG00000020160
AA Change: P453Q

Domain	Start	End	E-Value	Type
internal_repeat_1	12	59	8.66e-5	PROSPERO
low complexity region	225	241	N/A	INTRINSIC
HOX	272	337	1.05e-11	SMART
internal_repeat_1	384	428	8.66e-5	PROSPERO

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000194952

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 95.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous mutant mice die during gestation and exhibit eye, vasculature, and hematopoietic defects. Mice homozygous for a conditional allele activated in HSCs exhibit altered bone marrow cell development, altered HSC physiology and increased reactive oxygen species production. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	A	T	13: 81,492,537	C3357S	probably benign	Het
Ago1	T	A	4: 126,463,857		probably null	Het
Akap10	A	T	11: 61,890,303	D562E	possibly damaging	Het
Akr1b7	G	A	6: 34,418,994	A144T	possibly damaging	Het
Ankle1	A	G	8: 71,407,918	T340A	probably benign	Het
Arf5	C	T	6: 28,424,784	Q71*	probably null	Het
Arl15	C	T	13: 113,967,660	S111F	probably damaging	Het
Asph	G	A	4: 9,517,671	Q468*	probably null	Het
Bcam	G	T	7: 19,758,427	A581E	possibly damaging	Het
Blvra	G	T	2: 127,086,069	E80*	probably null	Het
Casc1	C	T	6: 145,205,241		probably null	Het
Ccr6	T	C	17: 8,256,082	F40L	possibly damaging	Het
Cfap161	A	T	7: 83,775,976	N302K	possibly damaging	Het
Ckmt2	T	A	13: 91,855,845	I345F	probably benign	Het
Cpsf6	A	G	10: 117,366,120		probably benign	Het
Ctnna1	A	G	18: 35,152,625	N8S	possibly damaging	Het
Cyp2d11	A	G	15: 82,391,753	L209P	probably damaging	Het
Dab2	T	C	15: 6,435,615	V628A	probably damaging	Het
Dcstamp	C	T	15: 39,755,175	Q327*	probably null	Het
Defb38	A	T	8: 19,023,467	Y63*	probably null	Het
Dlg5	A	T	14: 24,177,758	L365*	probably null	Het
Dnmt3l	C	A	10: 78,063,296	L110I	probably damaging	Het
Exoc3l2	G	T	7: 19,494,982	L108F	possibly damaging	Het
Exoc4	T	A	6: 33,347,825	N351K	possibly damaging	Het
Fam83h	C	A	15: 76,004,733	E252*	probably null	Het
Fancm	A	G	12: 65,077,174	D202G	probably damaging	Het
Fat1	T	A	8: 45,037,463	V3804E	probably benign	Het
Fbxw28	T	C	9: 109,330,917	T190A	probably benign	Het
Fer1l4	T	C	2: 156,039,118	T843A	probably benign	Het
Fnip1	A	T	11: 54,500,624	H461L	probably damaging	Het
Gcn1l1	A	T	5: 115,598,825	M1276L	probably benign	Het
Gemin4	A	G	11: 76,211,001	V978A	possibly damaging	Het
Gm7247	A	T	14: 51,365,335	I43F	probably damaging	Het
Gm853	C	A	4: 130,215,363	V295L	possibly damaging	Het
Gm9978	C	T	10: 78,486,897		noncoding transcript	Het
Gpr4	T	C	7: 19,223,145	S331P	probably damaging	Het
Hspa1a	T	A	17: 34,970,479	N483Y	probably damaging	Het
Ift74	A	G	4: 94,627,259	T138A	probably benign	Het
Ints14	T	G	9: 64,979,795	L336R	probably damaging	Het
Irak1	G	T	X: 74,022,612	P197Q	possibly damaging	Het
Kif4	A	G	X: 100,665,717	S315G	probably benign	Het
L3mbtl1	T	A	2: 162,960,070		probably null	Het
Lamb3	A	G	1: 193,334,181	R657G	probably benign	Het
Lrp2	A	C	2: 69,483,385	V2334G	probably benign	Het
Lrwd1	T	A	5: 136,130,478	Y431F	probably damaging	Het
Map3k21	A	T	8: 125,924,042	H261L	probably benign	Het
Mettl16	G	T	11: 74,802,929	M255I	probably benign	Het
Mllt10	A	G	2: 18,162,569	N435S	probably benign	Het
Mpp5	T	C	12: 78,809,922	F180L	possibly damaging	Het
Mta2	T	C	19: 8,943,516	I27T	probably damaging	Het
Nav2	A	G	7: 49,464,580	I771V	probably benign	Het
Nisch	A	T	14: 31,177,285		probably benign	Het
Npc1	G	A	18: 12,196,556	P990L	probably damaging	Het
Nrxn1	A	T	17: 90,704,277	I308K	probably damaging	Het
Olfr1378	A	T	11: 50,969,320	I101F	probably damaging	Het
Olfr1402	C	A	3: 97,410,449	C244F	probably damaging	Het
Olfr183	T	C	16: 59,000,420	L245P	possibly damaging	Het
Otogl	T	C	10: 107,858,918	D823G	probably benign	Het
P2rx7	A	G	5: 122,681,266	T584A	probably benign	Het
Pank1	T	A	19: 34,841,086	I18F	probably damaging	Het
Pgap3	A	G	11: 98,391,107	L126P	probably damaging	Het
Phka1	C	T	X: 102,610,201	R290H	probably damaging	Het
Pkd2	G	A	5: 104,483,176	E489K	probably damaging	Het
Prdm16	T	A	4: 154,347,925	S296C	probably null	Het
Prex2	T	A	1: 11,186,713	N1216K	probably damaging	Het
Prmt7	A	G	8: 106,227,298	T124A	probably damaging	Het
Ptpra	G	T	2: 130,539,735	R372L	probably damaging	Het
Ptpro	T	A	6: 137,443,594	V1007D	probably damaging	Het
Rap2b	G	T	3: 61,365,091	G12V	probably damaging	Het
Rapgef5	T	A	12: 117,714,064		probably null	Het
Rassf4	A	G	6: 116,645,127	F168S	possibly damaging	Het
Rtf1	T	A	2: 119,705,518	H184Q	probably benign	Het
Sacs	A	G	14: 61,213,771	K4422R	probably benign	Het
Sec11c	A	T	18: 65,800,649	T9S	probably benign	Het
Sema3d	C	T	5: 12,563,273	T439I	probably benign	Het
Sephs1	A	G	2: 4,899,540	N243S	probably benign	Het
Setd2	TTGGGA	T	9: 110,604,144		probably null	Het
Setx	A	G	2: 29,130,301	D100G	probably benign	Het
Slc22a7	C	A	17: 46,433,972	V383L	possibly damaging	Het
Slc25a40	T	C	5: 8,430,417	C56R	probably damaging	Het
Stk38l	T	A	6: 146,768,846	L229I	probably damaging	Het
Sult2a5	T	C	7: 13,625,434	S112P	probably damaging	Het
Syt4	A	G	18: 31,440,467	Y332H	probably damaging	Het
Tcof1	T	C	18: 60,832,785	E415G	possibly damaging	Het
Tenm2	A	G	11: 36,024,854	L1951P	probably damaging	Het
Tlr9	A	G	9: 106,225,337	N609S	probably damaging	Het
Tmem120a	A	T	5: 135,736,123	S266T	possibly damaging	Het
Tmem132b	A	G	5: 125,622,551	E92G	probably damaging	Het
Tmem8	C	T	17: 26,117,884	L259F	possibly damaging	Het
Tnfrsf18	T	A	4: 156,028,516	V196E	probably damaging	Het
Trpc1	A	T	9: 95,717,584	L474H	probably damaging	Het
Trpm6	T	C	19: 18,829,952	V1020A	probably damaging	Het
Usp20	T	A	2: 31,016,305	C562S	probably damaging	Het
Usp47	T	A	7: 112,067,236		probably null	Het
Vgll1	A	C	X: 57,092,430	K53T	probably damaging	Het
Vmn1r26	T	C	6: 58,008,350	N285D	possibly damaging	Het
Zfp445	T	A	9: 122,853,437	K480*	probably null	Het
Zfp786	A	G	6: 47,826,997	V37A	probably damaging	Het
Zfp821	A	G	8: 109,721,219	E64G	probably damaging	Het
Zfp994	T	A	17: 22,200,981	D329V	probably damaging	Het
Zkscan8	T	C	13: 21,520,318	S484G	probably damaging	Het

Other mutations in Meis1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01927:Meis1	APN	11	18881811	missense	probably benign	0.25
IGL02156:Meis1	APN	11	19011292	missense	probably benign	0.03
IGL02376:Meis1	APN	11	18881752	missense	probably benign	0.06
R0505:Meis1	UTSW	11	19011360	missense	probably damaging	0.99
R0833:Meis1	UTSW	11	18881767	missense	possibly damaging	0.91
R1477:Meis1	UTSW	11	18881665	nonsense	probably null
R1512:Meis1	UTSW	11	18881682	missense	probably damaging	0.97
R1643:Meis1	UTSW	11	19016278	missense	probably benign	0.00
R1717:Meis1	UTSW	11	19010608	intron	probably benign
R2342:Meis1	UTSW	11	18881647	missense	probably damaging	1.00
R2426:Meis1	UTSW	11	18988356	missense	possibly damaging	0.64
R3076:Meis1	UTSW	11	19011254	missense	probably benign	0.01
R3078:Meis1	UTSW	11	19011254	missense	probably benign	0.01
R4368:Meis1	UTSW	11	19010656	intron	probably benign
R4915:Meis1	UTSW	11	19009222	intron	probably benign
R4916:Meis1	UTSW	11	18881776	missense	possibly damaging	0.91
R4917:Meis1	UTSW	11	19009222	intron	probably benign
R4918:Meis1	UTSW	11	19009222	intron	probably benign
R4948:Meis1	UTSW	11	19016308	missense	probably benign	0.00
R5093:Meis1	UTSW	11	18881785	missense	probably benign	0.13
R5506:Meis1	UTSW	11	18941747	missense	possibly damaging	0.52
R5507:Meis1	UTSW	11	19016168	missense	probably benign	0.27
R5521:Meis1	UTSW	11	18988260	splice site	probably benign
R5673:Meis1	UTSW	11	19012812	missense	probably damaging	1.00
R5813:Meis1	UTSW	11	19016229	missense	probably benign	0.11
R6347:Meis1	UTSW	11	18905631	splice site	probably null
R6354:Meis1	UTSW	11	19016184	missense	possibly damaging	0.89
R6383:Meis1	UTSW	11	18941741	missense	probably benign
R6624:Meis1	UTSW	11	19016215	missense	probably benign
R7292:Meis1	UTSW	11	19011351	missense	probably damaging	1.00
R7413:Meis1	UTSW	11	18988357	missense	probably damaging	1.00
R7434:Meis1	UTSW	11	18885542	missense	unknown
R7571:Meis1	UTSW	11	18941702	missense	probably damaging	1.00
R8719:Meis1	UTSW	11	18885587	missense	probably benign
R9013:Meis1	UTSW	11	19016354	missense	probably benign	0.00
R9043:Meis1	UTSW	11	18881916	missense	possibly damaging	0.58
R9410:Meis1	UTSW	11	18883987	critical splice donor site	probably null
R9571:Meis1	UTSW	11	19011378	missense	probably damaging	1.00
Z1176:Meis1	UTSW	11	19014317	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ACTTCGGATGGTTCTCCTGC -3'
(R):5'- CCAATGGGTGTGAGTATGGGAC -3'

Sequencing Primer
(F):5'- CCTGCATTTTAAGAGTCCCTATGAAG -3'
(R):5'- TGGGACAGCCGAGTTATACC -3'

Posted On

2014-09-18