Mutagenetix > Incidental Mutation

Incidental Mutation 'R2087:Troap'

231547

Institutional Source

Beutler Lab

Gene Symbol

Troap

Ensembl Gene

ENSMUSG00000032783

Gene Name

trophinin associated protein

Synonyms

tastin, E130301L11Rik

MMRRC Submission

040092-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.077) question?

Stock #

R2087 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

98972854-98981290 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 98976698 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 274 (V274A)

Ref Sequence

ENSEMBL: ENSMUSP00000155404 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039665] [ENSMUST00000230054]

AlphaFold

B7ZNG4

Predicted Effect

possibly damaging
Transcript: ENSMUST00000039665
AA Change: V274A

PolyPhen 2 Score 0.843 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000035389
Gene: ENSMUSG00000032783
AA Change: V274A

Domain	Start	End	E-Value	Type
low complexity region	232	246	N/A	INTRINSIC
low complexity region	390	407	N/A	INTRINSIC
low complexity region	468	479	N/A	INTRINSIC
low complexity region	499	511	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183449

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229224

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229740

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230027

Predicted Effect

possibly damaging
Transcript: ENSMUST00000230054
AA Change: V274A

PolyPhen 2 Score 0.843 (Sensitivity: 0.83; Specificity: 0.93)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230311

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230868

Meta Mutation Damage Score

0.1086

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.9%

Validation Efficiency

95% (57/60)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700021P04Rik	T	A	19: 24,042,364 (GRCm39)		noncoding transcript	Het
Adamts8	G	A	9: 30,873,408 (GRCm39)	R871Q	probably damaging	Het
Ank1	T	C	8: 23,583,827 (GRCm39)	L310S	probably damaging	Het
Atp2a3	A	G	11: 72,871,274 (GRCm39)	T592A	probably damaging	Het
Bpifb6	A	G	2: 153,747,998 (GRCm39)	D219G	possibly damaging	Het
Catsper4	T	C	4: 133,953,916 (GRCm39)	N81S	probably damaging	Het
Ccdc14	T	C	16: 34,516,015 (GRCm39)		probably null	Het
Ces1c	A	C	8: 93,834,230 (GRCm39)	N353K	probably benign	Het
Chrna6	T	A	8: 27,897,155 (GRCm39)	M241L	probably benign	Het
Chtf8	T	A	8: 107,612,568 (GRCm39)	R124*	probably null	Het
Cpt1b	A	G	15: 89,306,411 (GRCm39)	V296A	probably benign	Het
Cryl1	G	A	14: 57,513,402 (GRCm39)	S273L	possibly damaging	Het
Ctps1	T	C	4: 120,420,012 (GRCm39)	D134G	probably benign	Het
Cyp4f18	T	C	8: 72,754,832 (GRCm39)	M138V	probably benign	Het
Dnajb12	A	G	10: 59,726,667 (GRCm39)	K107R	possibly damaging	Het
Epha1	C	T	6: 42,340,502 (GRCm39)	D590N	probably benign	Het
Fndc3b	A	G	3: 27,505,703 (GRCm39)	V855A	probably benign	Het
Ganc	A	G	2: 120,287,738 (GRCm39)	Y822C	probably damaging	Het
Hook2	A	G	8: 85,729,320 (GRCm39)	D622G	probably damaging	Het
Kcnj8	T	A	6: 142,511,422 (GRCm39)	N395I	probably benign	Het
Kdm4b	T	C	17: 56,696,564 (GRCm39)	S427P	possibly damaging	Het
Krt12	A	G	11: 99,309,459 (GRCm39)	F267S	probably damaging	Het
Lrrn2	T	G	1: 132,865,489 (GRCm39)	F185V	probably damaging	Het
Mecom	A	G	3: 30,006,963 (GRCm39)	S764P	probably benign	Het
Mfsd14b	C	G	13: 65,215,796 (GRCm39)	G386R	probably damaging	Het
Mrm2	A	G	5: 140,314,155 (GRCm39)	S227P	probably damaging	Het
Mug1	A	G	6: 121,833,250 (GRCm39)	N285S	probably benign	Het
Nalcn	T	C	14: 123,518,557 (GRCm39)	T1661A	probably benign	Het
Ncoa6	G	A	2: 155,248,079 (GRCm39)	R1742*	probably null	Het
Nln	T	A	13: 104,173,877 (GRCm39)	H548L	probably damaging	Het
Nrros	C	T	16: 31,962,975 (GRCm39)	W311*	probably null	Het
Or2r3	A	T	6: 42,448,985 (GRCm39)	N42K	probably damaging	Het
Or56b34	T	A	7: 104,937,393 (GRCm39)	I31N	probably benign	Het
Pgm5	T	C	19: 24,710,927 (GRCm39)	Y425C	probably damaging	Het
Pld2	A	G	11: 70,433,786 (GRCm39)	D242G	probably damaging	Het
Plekhm1	A	G	11: 103,287,851 (GRCm39)		probably null	Het
Ptdss1	T	C	13: 67,124,881 (GRCm39)		probably benign	Het
Pyroxd2	G	T	19: 42,722,209 (GRCm39)	L415I	probably benign	Het
Rapgef6	A	G	11: 54,522,075 (GRCm39)	T291A	probably damaging	Het
Rb1	A	G	14: 73,517,692 (GRCm39)	I238T	probably benign	Het
Rp1	G	A	1: 4,418,575 (GRCm39)	H846Y	probably damaging	Het
Rpgrip1	T	A	14: 52,374,079 (GRCm39)		probably null	Het
Scaf4	T	C	16: 90,049,313 (GRCm39)	D258G	unknown	Het
Ska1	A	T	18: 74,339,920 (GRCm39)	C9S	probably benign	Het
Skp2	C	A	15: 9,113,786 (GRCm39)	G376C	probably damaging	Het
Slc43a1	G	A	2: 84,680,175 (GRCm39)	R107Q	probably damaging	Het
Slc44a3	T	A	3: 121,319,319 (GRCm39)	N141Y	probably damaging	Het
Slit1	A	T	19: 41,625,922 (GRCm39)	D613E	probably benign	Het
Spata22	A	T	11: 73,231,079 (GRCm39)	Y111F	probably benign	Het
Tchh	C	A	3: 93,351,225 (GRCm39)	R222S	unknown	Het
Tekt3	A	G	11: 62,985,523 (GRCm39)	D443G	possibly damaging	Het
Tns2	A	T	15: 102,015,554 (GRCm39)	Q144L	possibly damaging	Het
Ugt1a8	A	G	1: 88,015,995 (GRCm39)	Y136C	probably damaging	Het
Vmn2r23	A	T	6: 123,718,458 (GRCm39)	M604L	probably benign	Het
Vps13b	T	A	15: 35,597,639 (GRCm39)	W1060R	probably damaging	Het
Wdfy3	A	G	5: 102,042,926 (GRCm39)	S1942P	probably damaging	Het
Wdr90	G	A	17: 26,065,577 (GRCm39)	T1596I	probably damaging	Het
Zc3h4	A	G	7: 16,150,865 (GRCm39)	E69G	possibly damaging	Het

Other mutations in Troap

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01140:Troap	APN	15	98,980,027 (GRCm39)	missense	probably damaging	1.00
IGL01949:Troap	APN	15	98,979,102 (GRCm39)	missense	probably benign	0.08
IGL02468:Troap	APN	15	98,973,242 (GRCm39)	missense	possibly damaging	0.83
IGL02804:Troap	APN	15	98,975,552 (GRCm39)	splice site	probably null
IGL03224:Troap	APN	15	98,979,758 (GRCm39)	missense	probably benign
R0617:Troap	UTSW	15	98,980,541 (GRCm39)	missense	probably damaging	1.00
R1085:Troap	UTSW	15	98,980,044 (GRCm39)	missense	probably damaging	0.99
R1872:Troap	UTSW	15	98,973,233 (GRCm39)	splice site	probably benign
R1884:Troap	UTSW	15	98,975,779 (GRCm39)	missense	probably benign	0.00
R1937:Troap	UTSW	15	98,975,269 (GRCm39)	missense	probably damaging	1.00
R2063:Troap	UTSW	15	98,980,344 (GRCm39)	missense	probably benign	0.00
R2065:Troap	UTSW	15	98,980,344 (GRCm39)	missense	probably benign	0.00
R2066:Troap	UTSW	15	98,980,344 (GRCm39)	missense	probably benign	0.00
R2068:Troap	UTSW	15	98,980,344 (GRCm39)	missense	probably benign	0.00
R2159:Troap	UTSW	15	98,975,467 (GRCm39)	missense	probably damaging	0.96
R4282:Troap	UTSW	15	98,976,713 (GRCm39)	missense	probably benign
R5296:Troap	UTSW	15	98,976,698 (GRCm39)	missense	probably damaging	0.99
R5557:Troap	UTSW	15	98,973,675 (GRCm39)	missense	possibly damaging	0.92
R5652:Troap	UTSW	15	98,980,145 (GRCm39)	missense	probably benign	0.00
R5764:Troap	UTSW	15	98,973,300 (GRCm39)	missense	probably damaging	1.00
R6891:Troap	UTSW	15	98,980,569 (GRCm39)	missense	possibly damaging	0.56
R8008:Troap	UTSW	15	98,973,511 (GRCm39)	missense	probably benign	0.00
R9319:Troap	UTSW	15	98,975,444 (GRCm39)	missense	probably benign	0.01
RF012:Troap	UTSW	15	98,973,281 (GRCm39)	missense	probably benign	0.10
Z1177:Troap	UTSW	15	98,975,458 (GRCm39)	missense	probably null

Predicted Primers

PCR Primer
(F):5'- GCCACTTCCTGCAAGACAATG -3'
(R):5'- TTGGTCCCAACTCCAGCAAAAG -3'

Sequencing Primer
(F):5'- CCTGCAAGACAATGTCTACTGTG -3'
(R):5'- CCAAATACCCTGAGTCCCGGG -3'

Posted On

2014-09-18