Mutagenetix > Incidental Mutation

Incidental Mutation 'R2092:Chrdl2'

231840

Institutional Source

Beutler Lab

Gene Symbol

Chrdl2

Ensembl Gene

ENSMUSG00000030732

Gene Name

chordin-like 2

Synonyms

Chl2, 1810022C01Rik

MMRRC Submission

040097-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.177) question?

Stock #

R2092 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

99655611-99683935 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 99670184 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Stop codon at position 102 (C102*)

Ref Sequence

ENSEMBL: ENSMUSP00000102699 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032977] [ENSMUST00000107084]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000032977
AA Change: C95*

SMART Domains

Protein: ENSMUSP00000032977
Gene: ENSMUSG00000030732
AA Change: C95*

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
VWC	33	95	1.13e-3	SMART
VWC	111	174	1.58e-1	SMART
low complexity region	207	219	N/A	INTRINSIC
VWC	248	310	3.09e-10	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000107084
AA Change: C102*

SMART Domains

Protein: ENSMUSP00000102699
Gene: ENSMUSG00000030732
AA Change: C102*

Domain	Start	End	E-Value	Type
VWC	40	102	1.13e-3	SMART
VWC	118	181	1.58e-1	SMART
low complexity region	214	226	N/A	INTRINSIC
VWC	255	317	3.09e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000144808

SMART Domains

Protein: ENSMUSP00000120760
Gene: ENSMUSG00000030732

Domain	Start	End	E-Value	Type
Blast:VWC	2	34	2e-15	BLAST
low complexity region	67	79	N/A	INTRINSIC
low complexity region	96	114	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the chordin family of proteins. Chordin family members are secreted proteins that share a cysteine-rich pro-collagen repeat domain and associate with members of the transforming growth factor beta superfamily. In vitro assays demonstrate a direct interaction between the encoded protein and human activin A. This gene is expressed in many tissues including osteoblasts, where it is differentially expressed during differentiation. In addition, its expression is upregulated in human osteoarthritic joint cartilage, suggesting a role in adult cartilage regeneration. [provided by RefSeq, Jan 2015]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	T	A	6: 121,651,896 (GRCm39)	C1321*	probably null	Het
Abca8b	A	G	11: 109,857,534 (GRCm39)	F673L	possibly damaging	Het
Adam19	T	G	11: 45,951,731 (GRCm39)		probably null	Het
AI987944	T	C	7: 41,024,041 (GRCm39)	T313A	possibly damaging	Het
Akap13	A	T	7: 75,260,318 (GRCm39)	I178F	probably benign	Het
Alb	G	GA	5: 90,611,842 (GRCm39)		probably null	Het
Bod1l	A	G	5: 41,988,860 (GRCm39)	S416P	probably damaging	Het
Casr	A	T	16: 36,330,405 (GRCm39)	Y310N	possibly damaging	Het
Cela3a	T	C	4: 137,131,737 (GRCm39)	N152S	probably benign	Het
Col4a4	G	A	1: 82,476,667 (GRCm39)	S554L	unknown	Het
Col6a4	T	C	9: 105,937,530 (GRCm39)	K1392R	probably damaging	Het
Dab1	T	G	4: 104,535,974 (GRCm39)	Y128D	probably damaging	Het
Dars1	A	T	1: 128,301,755 (GRCm39)	M293K	probably damaging	Het
Dlec1	T	C	9: 118,950,912 (GRCm39)	F493L	possibly damaging	Het
Dmbt1	G	T	7: 130,651,748 (GRCm39)	W330L	probably damaging	Het
Dnah11	A	T	12: 117,976,451 (GRCm39)	M831K	possibly damaging	Het
Dock7	T	C	4: 98,897,545 (GRCm39)	N715S	possibly damaging	Het
Edc4	T	A	8: 106,614,160 (GRCm39)	L12Q	probably damaging	Het
Edem2	T	C	2: 155,550,969 (GRCm39)	M333V	probably benign	Het
Fpr-rs4	CAGGAA	CA	17: 18,242,596 (GRCm39)		probably null	Het
Fto	C	A	8: 92,136,315 (GRCm39)	Y194*	probably null	Het
Gnptab	T	G	10: 88,276,167 (GRCm39)	Y1151*	probably null	Het
Grm1	A	G	10: 10,564,969 (GRCm39)	L1113P	probably benign	Het
Hnrnpa0	T	C	13: 58,275,614 (GRCm39)	K172E	probably damaging	Het
Ifitm1	A	G	7: 140,549,427 (GRCm39)	D70G	probably damaging	Het
Irx4	C	A	13: 73,413,605 (GRCm39)	T25K	probably damaging	Het
Kif22	C	T	7: 126,632,802 (GRCm39)	D195N	probably damaging	Het
Lrp2	C	T	2: 69,366,365 (GRCm39)	D245N	probably benign	Het
Lyz1	C	T	10: 117,124,504 (GRCm39)	R144Q	probably benign	Het
Macf1	T	A	4: 123,276,971 (GRCm39)	T6055S	probably damaging	Het
Mrgpra2b	C	T	7: 47,113,908 (GRCm39)	V249I	probably benign	Het
Myh9	G	A	15: 77,648,550 (GRCm39)	Q80*	probably null	Het
Myo6	G	T	9: 80,152,964 (GRCm39)	R199L	probably damaging	Het
Naglu	G	A	11: 100,967,546 (GRCm39)	V499I	possibly damaging	Het
Nfkbie	T	C	17: 45,869,465 (GRCm39)	F140S	probably benign	Het
Or4p8	A	G	2: 88,727,611 (GRCm39)	F110S	probably damaging	Het
Or52ab7	G	A	7: 102,978,316 (GRCm39)	V208M	probably damaging	Het
Or52z1	A	T	7: 103,437,279 (GRCm39)	F68L	possibly damaging	Het
Or5b102	T	A	19: 13,041,166 (GRCm39)	Y130*	probably null	Het
Or5p81	CAAATA	CA	7: 108,266,869 (GRCm39)		probably null	Het
Or8g21	A	T	9: 38,906,485 (GRCm39)	L82Q	probably damaging	Het
Otop1	A	T	5: 38,457,110 (GRCm39)	I290F	probably damaging	Het
P2rx2	C	T	5: 110,489,007 (GRCm39)	D203N	probably damaging	Het
Pcdhb10	T	A	18: 37,547,240 (GRCm39)	I772N	probably benign	Het
Pnliprp1	A	G	19: 58,729,616 (GRCm39)	H423R	probably benign	Het
Ptk2	A	T	15: 73,108,040 (GRCm39)	Y56*	probably null	Het
Rapgef3	T	C	15: 97,658,604 (GRCm39)	D134G	probably damaging	Het
Scaf11	A	C	15: 96,313,708 (GRCm39)	S1358A	probably damaging	Het
Scn9a	T	C	2: 66,363,720 (GRCm39)	M844V	probably damaging	Het
Sh3tc1	T	C	5: 35,858,002 (GRCm39)	E1121G	probably damaging	Het
Slc25a15	T	C	8: 22,870,950 (GRCm39)	T176A	probably damaging	Het
Slc29a4	T	A	5: 142,704,610 (GRCm39)	I384N	probably damaging	Het
Slc40a1	A	T	1: 45,948,614 (GRCm39)	D555E	probably benign	Het
Smc5	T	C	19: 23,216,263 (GRCm39)	I446V	probably benign	Het
St6gal2	T	C	17: 55,817,267 (GRCm39)	Y477H	probably damaging	Het
Syngr1	A	T	15: 80,000,141 (GRCm39)	Q84L	possibly damaging	Het
Tedc1	T	C	12: 113,121,340 (GRCm39)	L187P	probably damaging	Het
Tg	A	G	15: 66,721,456 (GRCm39)	I322V	probably null	Het
Thap12	T	C	7: 98,365,656 (GRCm39)	V608A	possibly damaging	Het
Tmbim6	T	C	15: 99,299,949 (GRCm39)	S22P	probably damaging	Het
Ttc3	C	T	16: 94,243,691 (GRCm39)	P1232S	probably benign	Het
Upk3a	A	G	15: 84,902,286 (GRCm39)	T38A	probably damaging	Het
Utrn	A	T	10: 12,554,442 (GRCm39)	M1549K	probably benign	Het
Vmn1r176	C	T	7: 23,534,578 (GRCm39)	D192N	probably damaging	Het
Vmn1r198	A	G	13: 22,538,885 (GRCm39)	T35A	possibly damaging	Het
Xkr7	C	T	2: 152,895,983 (GRCm39)	S279L	probably damaging	Het
Zer1	G	A	2: 29,998,286 (GRCm39)	L342F	probably damaging	Het
Zfp641	G	T	15: 98,191,593 (GRCm39)	T31N	probably benign	Het
Zfp74	G	A	7: 29,653,349 (GRCm39)		probably benign	Het

Other mutations in Chrdl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00850:Chrdl2	APN	7	99,683,848 (GRCm39)	missense	probably damaging	0.96
IGL00965:Chrdl2	APN	7	99,655,860 (GRCm39)	splice site	probably null
IGL01320:Chrdl2	APN	7	99,666,248 (GRCm39)	missense	probably damaging	1.00
IGL01322:Chrdl2	APN	7	99,666,248 (GRCm39)	missense	probably damaging	1.00
IGL01977:Chrdl2	APN	7	99,671,263 (GRCm39)	missense	probably benign	0.33
IGL02170:Chrdl2	APN	7	99,683,821 (GRCm39)	missense	possibly damaging	0.92
IGL02478:Chrdl2	APN	7	99,670,190 (GRCm39)	critical splice donor site	probably null
IGL02745:Chrdl2	APN	7	99,670,170 (GRCm39)	missense	probably damaging	1.00
IGL03117:Chrdl2	APN	7	99,676,787 (GRCm39)	missense	possibly damaging	0.83
IGL03377:Chrdl2	APN	7	99,671,259 (GRCm39)	missense	probably benign	0.03
Measley	UTSW	7	99,659,328 (GRCm39)	critical splice donor site	probably null
R1453:Chrdl2	UTSW	7	99,666,197 (GRCm39)	missense	possibly damaging	0.64
R1900:Chrdl2	UTSW	7	99,682,871 (GRCm39)	missense	possibly damaging	0.75
R3421:Chrdl2	UTSW	7	99,673,075 (GRCm39)	missense	probably damaging	1.00
R3949:Chrdl2	UTSW	7	99,678,412 (GRCm39)	missense	possibly damaging	0.89
R4305:Chrdl2	UTSW	7	99,671,229 (GRCm39)	missense	probably damaging	1.00
R4306:Chrdl2	UTSW	7	99,671,229 (GRCm39)	missense	probably damaging	1.00
R4776:Chrdl2	UTSW	7	99,655,748 (GRCm39)	unclassified	probably benign
R5208:Chrdl2	UTSW	7	99,673,129 (GRCm39)	missense	probably damaging	0.96
R5327:Chrdl2	UTSW	7	99,677,948 (GRCm39)	missense	probably damaging	1.00
R5859:Chrdl2	UTSW	7	99,670,114 (GRCm39)	missense	probably damaging	1.00
R5928:Chrdl2	UTSW	7	99,659,200 (GRCm39)	start gained	probably benign
R6706:Chrdl2	UTSW	7	99,659,328 (GRCm39)	critical splice donor site	probably null
R7027:Chrdl2	UTSW	7	99,671,240 (GRCm39)	missense	probably damaging	1.00
R7039:Chrdl2	UTSW	7	99,677,879 (GRCm39)	missense	probably damaging	1.00
R7357:Chrdl2	UTSW	7	99,678,414 (GRCm39)	missense	probably benign	0.00
R7468:Chrdl2	UTSW	7	99,659,332 (GRCm39)	splice site	probably null
R7840:Chrdl2	UTSW	7	99,682,863 (GRCm39)	missense	probably damaging	0.99
R7870:Chrdl2	UTSW	7	99,659,249 (GRCm39)	missense	unknown
R7887:Chrdl2	UTSW	7	99,678,457 (GRCm39)	missense	possibly damaging	0.89
R8394:Chrdl2	UTSW	7	99,666,292 (GRCm39)	missense	possibly damaging	0.95
R8436:Chrdl2	UTSW	7	99,676,940 (GRCm39)	critical splice donor site	probably null
R8958:Chrdl2	UTSW	7	99,670,129 (GRCm39)	missense	probably damaging	1.00
R9242:Chrdl2	UTSW	7	99,655,743 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- GGGTAAGGATAGGACTCACTTG -3'
(R):5'- TTGAAGCCAGAAGTTTGCTGC -3'

Sequencing Primer
(F):5'- CTTAAGACAAAGTAGGATTCTGCAGC -3'
(R):5'- GCCAGAAGTTTGCTGCTACCTTAG -3'

Posted On

2014-09-18