Mutagenetix > Incidental Mutation

Incidental Mutation 'R2092:Abca8b'

231860

Institutional Source

Beutler Lab

Gene Symbol

Abca8b

Ensembl Gene

ENSMUSG00000020620

Gene Name

ATP-binding cassette, sub-family A (ABC1), member 8b

Synonyms

Abca8

MMRRC Submission

040097-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2092 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

109932190-109995845 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 109966708 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 673 (F673L)

Ref Sequence

ENSEMBL: ENSMUSP00000020948 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020948] [ENSMUST00000106669]

AlphaFold

Q8K440

Predicted Effect

possibly damaging
Transcript: ENSMUST00000020948
AA Change: F673L

PolyPhen 2 Score 0.632 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000020948
Gene: ENSMUSG00000020620
AA Change: F673L

Domain	Start	End	E-Value	Type
Pfam:ABC2_membrane_3	28	417	3.9e-28	PFAM
AAA	507	691	6.36e-10	SMART
Pfam:ABC2_membrane_3	859	1215	1e-10	PFAM
low complexity region	1246	1255	N/A	INTRINSIC
AAA	1313	1492	6.17e-8	SMART
low complexity region	1597	1607	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106669
AA Change: F611L

PolyPhen 2 Score 0.271 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000102280
Gene: ENSMUSG00000020620
AA Change: F611L

Domain	Start	End	E-Value	Type
Pfam:ABC2_membrane_3	28	344	2.6e-16	PFAM
AAA	445	629	6.36e-10	SMART
transmembrane domain	798	815	N/A	INTRINSIC
transmembrane domain	1001	1023	N/A	INTRINSIC
transmembrane domain	1038	1060	N/A	INTRINSIC
transmembrane domain	1072	1091	N/A	INTRINSIC
transmembrane domain	1101	1123	N/A	INTRINSIC
transmembrane domain	1136	1158	N/A	INTRINSIC
low complexity region	1184	1193	N/A	INTRINSIC
AAA	1251	1430	6.17e-8	SMART
low complexity region	1535	1545	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intracellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the ABC1 subfamily. Members of the ABC1 subfamily comprise the only major ABC subfamily found exclusively in multicellular eukaryotes. The encoded protein may regulate lipid metabolism and be involved in the formation and maintenance of myelin. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	T	A	6: 121,674,937 (GRCm38)	C1321*	probably null	Het
Adam19	T	G	11: 46,060,904 (GRCm38)		probably null	Het
AI987944	T	C	7: 41,374,617 (GRCm38)	T313A	possibly damaging	Het
Akap13	A	T	7: 75,610,570 (GRCm38)	I178F	probably benign	Het
Alb	G	GA	5: 90,463,983 (GRCm38)		probably null	Het
Bod1l	A	G	5: 41,831,517 (GRCm38)	S416P	probably damaging	Het
Casr	A	T	16: 36,510,043 (GRCm38)	Y310N	possibly damaging	Het
Cela3a	T	C	4: 137,404,426 (GRCm38)	N152S	probably benign	Het
Chrdl2	T	A	7: 100,020,977 (GRCm38)	C102*	probably null	Het
Col4a4	G	A	1: 82,498,946 (GRCm38)	S554L	unknown	Het
Col6a4	T	C	9: 106,060,331 (GRCm38)	K1392R	probably damaging	Het
Dab1	T	G	4: 104,678,777 (GRCm38)	Y128D	probably damaging	Het
Dars	A	T	1: 128,374,018 (GRCm38)	M293K	probably damaging	Het
Dlec1	T	C	9: 119,121,844 (GRCm38)	F493L	possibly damaging	Het
Dmbt1	G	T	7: 131,050,018 (GRCm38)	W330L	probably damaging	Het
Dnah11	A	T	12: 118,012,716 (GRCm38)	M831K	possibly damaging	Het
Dock7	T	C	4: 99,009,308 (GRCm38)	N715S	possibly damaging	Het
Edc4	T	A	8: 105,887,528 (GRCm38)	L12Q	probably damaging	Het
Edem2	T	C	2: 155,709,049 (GRCm38)	M333V	probably benign	Het
Fpr-rs4	CAGGAA	CA	17: 18,022,334 (GRCm38)		probably null	Het
Fto	C	A	8: 91,409,687 (GRCm38)	Y194*	probably null	Het
Gnptab	T	G	10: 88,440,305 (GRCm38)	Y1151*	probably null	Het
Grm1	A	G	10: 10,689,225 (GRCm38)	L1113P	probably benign	Het
Hnrnpa0	T	C	13: 58,127,800 (GRCm38)	K172E	probably damaging	Het
Ifitm1	A	G	7: 140,969,514 (GRCm38)	D70G	probably damaging	Het
Irx4	C	A	13: 73,265,486 (GRCm38)	T25K	probably damaging	Het
Kif22	C	T	7: 127,033,630 (GRCm38)	D195N	probably damaging	Het
Lrp2	C	T	2: 69,536,021 (GRCm38)	D245N	probably benign	Het
Lyz1	C	T	10: 117,288,599 (GRCm38)	R144Q	probably benign	Het
Macf1	T	A	4: 123,383,178 (GRCm38)	T6055S	probably damaging	Het
Mrgpra2b	C	T	7: 47,464,160 (GRCm38)	V249I	probably benign	Het
Myh9	G	A	15: 77,764,350 (GRCm38)	Q80*	probably null	Het
Myo6	G	T	9: 80,245,682 (GRCm38)	R199L	probably damaging	Het
Naglu	G	A	11: 101,076,720 (GRCm38)	V499I	possibly damaging	Het
Nfkbie	T	C	17: 45,558,539 (GRCm38)	F140S	probably benign	Het
Olfr1208	A	G	2: 88,897,267 (GRCm38)	F110S	probably damaging	Het
Olfr1454	T	A	19: 13,063,802 (GRCm38)	Y130*	probably null	Het
Olfr510	CAAATA	CA	7: 108,667,662 (GRCm38)		probably null	Het
Olfr598	G	A	7: 103,329,109 (GRCm38)	V208M	probably damaging	Het
Olfr67	A	T	7: 103,788,072 (GRCm38)	F68L	possibly damaging	Het
Olfr935	A	T	9: 38,995,189 (GRCm38)	L82Q	probably damaging	Het
Otop1	A	T	5: 38,299,766 (GRCm38)	I290F	probably damaging	Het
P2rx2	C	T	5: 110,341,141 (GRCm38)	D203N	probably damaging	Het
Pcdhb10	T	A	18: 37,414,187 (GRCm38)	I772N	probably benign	Het
Pnliprp1	A	G	19: 58,741,184 (GRCm38)	H423R	probably benign	Het
Ptk2	A	T	15: 73,236,191 (GRCm38)	Y56*	probably null	Het
Rapgef3	T	C	15: 97,760,723 (GRCm38)	D134G	probably damaging	Het
Scaf11	A	C	15: 96,415,827 (GRCm38)	S1358A	probably damaging	Het
Scn9a	T	C	2: 66,533,376 (GRCm38)	M844V	probably damaging	Het
Sh3tc1	T	C	5: 35,700,658 (GRCm38)	E1121G	probably damaging	Het
Slc25a15	T	C	8: 22,380,934 (GRCm38)	T176A	probably damaging	Het
Slc29a4	T	A	5: 142,718,855 (GRCm38)	I384N	probably damaging	Het
Slc40a1	A	T	1: 45,909,454 (GRCm38)	D555E	probably benign	Het
Smc5	T	C	19: 23,238,899 (GRCm38)	I446V	probably benign	Het
St6gal2	T	C	17: 55,510,266 (GRCm38)	Y477H	probably damaging	Het
Syngr1	A	T	15: 80,115,940 (GRCm38)	Q84L	possibly damaging	Het
Tedc1	T	C	12: 113,157,720 (GRCm38)	L187P	probably damaging	Het
Tg	A	G	15: 66,849,607 (GRCm38)	I322V	probably null	Het
Thap12	T	C	7: 98,716,449 (GRCm38)	V608A	possibly damaging	Het
Tmbim6	T	C	15: 99,402,068 (GRCm38)	S22P	probably damaging	Het
Ttc3	C	T	16: 94,442,832 (GRCm38)	P1232S	probably benign	Het
Upk3a	A	G	15: 85,018,085 (GRCm38)	T38A	probably damaging	Het
Utrn	A	T	10: 12,678,698 (GRCm38)	M1549K	probably benign	Het
Vmn1r176	C	T	7: 23,835,153 (GRCm38)	D192N	probably damaging	Het
Vmn1r198	A	G	13: 22,354,715 (GRCm38)	T35A	possibly damaging	Het
Xkr7	C	T	2: 153,054,063 (GRCm38)	S279L	probably damaging	Het
Zer1	G	A	2: 30,108,274 (GRCm38)	L342F	probably damaging	Het
Zfp641	G	T	15: 98,293,712 (GRCm38)	T31N	probably benign	Het
Zfp74	G	A	7: 29,953,924 (GRCm38)		probably benign	Het

Other mutations in Abca8b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00862:Abca8b	APN	11	109,953,548 (GRCm38)	missense	possibly damaging	0.66
IGL00952:Abca8b	APN	11	109,969,060 (GRCm38)	critical splice donor site	probably null
IGL01141:Abca8b	APN	11	109,937,730 (GRCm38)	missense	probably damaging	1.00
IGL01523:Abca8b	APN	11	109,976,494 (GRCm38)	missense	probably damaging	1.00
IGL01633:Abca8b	APN	11	109,936,754 (GRCm38)	missense	probably damaging	0.99
IGL01862:Abca8b	APN	11	109,947,171 (GRCm38)	nonsense	probably null
IGL01963:Abca8b	APN	11	109,971,763 (GRCm38)	missense	probably damaging	0.99
IGL02169:Abca8b	APN	11	109,952,582 (GRCm38)	missense	probably damaging	0.98
IGL02536:Abca8b	APN	11	109,981,748 (GRCm38)	missense	probably benign	0.02
IGL02658:Abca8b	APN	11	109,952,560 (GRCm38)	missense	probably benign
IGL02828:Abca8b	APN	11	109,980,894 (GRCm38)	missense	probably damaging	0.99
IGL03118:Abca8b	APN	11	109,947,181 (GRCm38)	missense	possibly damaging	0.66
IGL03302:Abca8b	APN	11	109,967,750 (GRCm38)	missense	possibly damaging	0.80
IGL03325:Abca8b	APN	11	109,953,596 (GRCm38)	missense	possibly damaging	0.94
R0057:Abca8b	UTSW	11	109,941,559 (GRCm38)	missense	possibly damaging	0.91
R0131:Abca8b	UTSW	11	109,942,289 (GRCm38)	missense	possibly damaging	0.46
R0226:Abca8b	UTSW	11	109,957,018 (GRCm38)	splice site	probably null
R0426:Abca8b	UTSW	11	109,955,027 (GRCm38)	splice site	probably benign
R0432:Abca8b	UTSW	11	109,980,015 (GRCm38)	missense	possibly damaging	0.94
R0512:Abca8b	UTSW	11	109,950,650 (GRCm38)	missense	probably benign	0.32
R0589:Abca8b	UTSW	11	109,942,268 (GRCm38)	missense	probably damaging	0.96
R0690:Abca8b	UTSW	11	109,969,808 (GRCm38)	splice site	probably benign
R1263:Abca8b	UTSW	11	109,941,607 (GRCm38)	missense	possibly damaging	0.66
R1371:Abca8b	UTSW	11	109,953,553 (GRCm38)	missense	probably damaging	0.99
R1497:Abca8b	UTSW	11	109,973,821 (GRCm38)	splice site	probably benign
R1502:Abca8b	UTSW	11	109,974,645 (GRCm38)	missense	probably damaging	1.00
R1517:Abca8b	UTSW	11	109,971,814 (GRCm38)	missense	possibly damaging	0.66
R1543:Abca8b	UTSW	11	109,974,674 (GRCm38)	missense	probably damaging	0.98
R1618:Abca8b	UTSW	11	109,949,888 (GRCm38)	splice site	probably benign
R1625:Abca8b	UTSW	11	109,967,121 (GRCm38)	missense	probably benign	0.11
R1753:Abca8b	UTSW	11	109,973,716 (GRCm38)	missense	probably benign	0.00
R1819:Abca8b	UTSW	11	109,981,056 (GRCm38)	critical splice acceptor site	probably null
R1822:Abca8b	UTSW	11	109,957,075 (GRCm38)	missense	possibly damaging	0.92
R1829:Abca8b	UTSW	11	109,942,341 (GRCm38)	missense	probably damaging	0.97
R1873:Abca8b	UTSW	11	109,979,955 (GRCm38)	missense	probably benign	0.01
R1899:Abca8b	UTSW	11	109,937,918 (GRCm38)	missense	possibly damaging	0.92
R1908:Abca8b	UTSW	11	109,957,098 (GRCm38)	missense	possibly damaging	0.92
R1962:Abca8b	UTSW	11	109,979,898 (GRCm38)	missense	probably benign	0.00
R1984:Abca8b	UTSW	11	109,977,841 (GRCm38)	missense	probably damaging	1.00
R2035:Abca8b	UTSW	11	109,957,106 (GRCm38)	missense	possibly damaging	0.94
R2100:Abca8b	UTSW	11	109,937,782 (GRCm38)	missense	probably damaging	1.00
R2267:Abca8b	UTSW	11	109,955,148 (GRCm38)	missense	probably benign	0.03
R2871:Abca8b	UTSW	11	109,955,176 (GRCm38)	missense	possibly damaging	0.83
R2871:Abca8b	UTSW	11	109,955,176 (GRCm38)	missense	possibly damaging	0.83
R2872:Abca8b	UTSW	11	109,955,176 (GRCm38)	missense	possibly damaging	0.83
R2872:Abca8b	UTSW	11	109,955,176 (GRCm38)	missense	possibly damaging	0.83
R2873:Abca8b	UTSW	11	109,955,176 (GRCm38)	missense	possibly damaging	0.83
R3711:Abca8b	UTSW	11	109,946,255 (GRCm38)	missense	possibly damaging	0.46
R3937:Abca8b	UTSW	11	109,974,567 (GRCm38)	missense	probably benign	0.01
R4052:Abca8b	UTSW	11	109,981,725 (GRCm38)	nonsense	probably null
R4060:Abca8b	UTSW	11	109,957,201 (GRCm38)	missense	probably benign	0.04
R4207:Abca8b	UTSW	11	109,981,725 (GRCm38)	nonsense	probably null
R4208:Abca8b	UTSW	11	109,981,725 (GRCm38)	nonsense	probably null
R4354:Abca8b	UTSW	11	109,971,692 (GRCm38)	missense	probably benign	0.27
R4399:Abca8b	UTSW	11	109,936,385 (GRCm38)	missense	possibly damaging	0.66
R4456:Abca8b	UTSW	11	109,942,245 (GRCm38)	missense	probably benign	0.27
R4509:Abca8b	UTSW	11	109,966,755 (GRCm38)	missense	probably damaging	1.00
R4672:Abca8b	UTSW	11	109,936,448 (GRCm38)	missense	possibly damaging	0.81
R4868:Abca8b	UTSW	11	109,974,512 (GRCm38)	missense	probably benign	0.05
R5002:Abca8b	UTSW	11	109,961,797 (GRCm38)	missense	probably damaging	0.96
R5007:Abca8b	UTSW	11	109,936,764 (GRCm38)	missense	probably damaging	1.00
R5014:Abca8b	UTSW	11	109,950,131 (GRCm38)	missense	probably damaging	0.98
R5023:Abca8b	UTSW	11	109,974,988 (GRCm38)	critical splice donor site	probably null
R5091:Abca8b	UTSW	11	109,936,384 (GRCm38)	missense	possibly damaging	0.92
R5098:Abca8b	UTSW	11	109,957,118 (GRCm38)	missense	probably benign	0.05
R5117:Abca8b	UTSW	11	109,966,803 (GRCm38)	missense	probably damaging	1.00
R5234:Abca8b	UTSW	11	109,976,594 (GRCm38)	missense	possibly damaging	0.90
R5302:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5307:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5487:Abca8b	UTSW	11	109,953,514 (GRCm38)	missense	probably damaging	0.99
R5512:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5564:Abca8b	UTSW	11	109,934,581 (GRCm38)	missense	probably benign	0.08
R5610:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5677:Abca8b	UTSW	11	109,940,861 (GRCm38)	missense	probably damaging	1.00
R5723:Abca8b	UTSW	11	109,953,619 (GRCm38)	missense	possibly damaging	0.90
R5827:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5829:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5848:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5849:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5850:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5854:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R5982:Abca8b	UTSW	11	109,953,597 (GRCm38)	missense	possibly damaging	0.80
R5994:Abca8b	UTSW	11	109,949,766 (GRCm38)	splice site	probably null
R6035:Abca8b	UTSW	11	109,971,860 (GRCm38)	splice site	probably null
R6035:Abca8b	UTSW	11	109,971,860 (GRCm38)	splice site	probably null
R6050:Abca8b	UTSW	11	109,977,813 (GRCm38)	missense	probably damaging	1.00
R6145:Abca8b	UTSW	11	109,973,808 (GRCm38)	missense	probably benign	0.03
R6223:Abca8b	UTSW	11	109,977,846 (GRCm38)	missense	probably benign	0.00
R6349:Abca8b	UTSW	11	109,934,718 (GRCm38)	splice site	probably null
R7002:Abca8b	UTSW	11	109,941,564 (GRCm38)	missense	probably damaging	1.00
R7050:Abca8b	UTSW	11	109,973,718 (GRCm38)	missense	possibly damaging	0.90
R7107:Abca8b	UTSW	11	109,976,473 (GRCm38)	missense	probably damaging	0.98
R7158:Abca8b	UTSW	11	109,934,589 (GRCm38)	missense	probably damaging	1.00
R7170:Abca8b	UTSW	11	109,945,828 (GRCm38)	missense	probably benign	0.09
R7197:Abca8b	UTSW	11	109,945,822 (GRCm38)	nonsense	probably null
R7220:Abca8b	UTSW	11	109,981,717 (GRCm38)	missense	probably damaging	1.00
R7512:Abca8b	UTSW	11	109,938,449 (GRCm38)	missense	probably benign	0.01
R7590:Abca8b	UTSW	11	109,938,515 (GRCm38)	missense	probably damaging	0.97
R7658:Abca8b	UTSW	11	109,935,717 (GRCm38)	missense	probably benign	0.00
R7739:Abca8b	UTSW	11	109,974,591 (GRCm38)	missense	probably benign	0.05
R7797:Abca8b	UTSW	11	109,971,683 (GRCm38)	critical splice donor site	probably null
R7934:Abca8b	UTSW	11	109,975,039 (GRCm38)	missense	possibly damaging	0.75
R8074:Abca8b	UTSW	11	109,938,494 (GRCm38)	missense	probably benign
R8302:Abca8b	UTSW	11	109,962,580 (GRCm38)	critical splice donor site	probably null
R8341:Abca8b	UTSW	11	109,955,050 (GRCm38)	missense	probably damaging	1.00
R8486:Abca8b	UTSW	11	109,967,111 (GRCm38)	missense	possibly damaging	0.83
R8748:Abca8b	UTSW	11	109,945,771 (GRCm38)	missense	probably damaging	1.00
R8924:Abca8b	UTSW	11	109,947,177 (GRCm38)	missense	probably benign	0.00
R9002:Abca8b	UTSW	11	109,952,630 (GRCm38)	missense	probably benign	0.02
R9032:Abca8b	UTSW	11	109,957,247 (GRCm38)	missense	probably benign	0.04
R9099:Abca8b	UTSW	11	109,980,882 (GRCm38)	missense	probably damaging	1.00
R9124:Abca8b	UTSW	11	109,937,767 (GRCm38)	missense	probably damaging	0.97
R9178:Abca8b	UTSW	11	109,950,111 (GRCm38)	missense	probably benign	0.00
R9188:Abca8b	UTSW	11	109,981,735 (GRCm38)	nonsense	probably null
R9277:Abca8b	UTSW	11	109,976,521 (GRCm38)	missense	probably damaging	0.99
R9340:Abca8b	UTSW	11	109,950,113 (GRCm38)	missense	probably benign	0.43
R9371:Abca8b	UTSW	11	109,967,672 (GRCm38)	missense	probably damaging	1.00
R9382:Abca8b	UTSW	11	109,979,885 (GRCm38)	missense	probably benign
R9450:Abca8b	UTSW	11	109,969,104 (GRCm38)	missense	probably damaging	0.98
R9462:Abca8b	UTSW	11	109,953,607 (GRCm38)	missense
R9712:Abca8b	UTSW	11	109,942,337 (GRCm38)	missense	probably benign	0.30
Z1088:Abca8b	UTSW	11	109,976,482 (GRCm38)	missense	probably benign	0.09
Z1176:Abca8b	UTSW	11	109,974,644 (GRCm38)	missense	possibly damaging	0.87
Z1176:Abca8b	UTSW	11	109,961,908 (GRCm38)	missense	possibly damaging	0.52

Predicted Primers

PCR Primer
(F):5'- CATTATAGGGGAATGCCAGGGC -3'
(R):5'- ATAGTACGGAGTCTACGCTGCTTC -3'

Sequencing Primer
(F):5'- TGCCAGGGCCAGGAAGTG -3'
(R):5'- TCTACGCTGCTTCCTGGGAG -3'

Posted On

2014-09-18