Incidental Mutation 'R2094:Trim42'
ID 231978
Institutional Source Beutler Lab
Gene Symbol Trim42
Ensembl Gene ENSMUSG00000032451
Gene Name tripartite motif-containing 42
Synonyms 4930486B16Rik
MMRRC Submission 040098-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.061) question?
Stock # R2094 (G1)
Quality Score 225
Status Validated
Chromosome 9
Chromosomal Location 97231615-97252011 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 97248150 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 182 (N182S)
Ref Sequence ENSEMBL: ENSMUSP00000035026 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000035026]
AlphaFold Q9D2H5
Predicted Effect probably benign
Transcript: ENSMUST00000035026
AA Change: N182S

PolyPhen 2 Score 0.230 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000035026
Gene: ENSMUSG00000032451
AA Change: N182S

DomainStartEndE-ValueType
RING 146 191 3.67e-3 SMART
BBOX 233 280 1.42e0 SMART
BBOX 285 326 1.04e-2 SMART
low complexity region 386 399 N/A INTRINSIC
FN3 603 688 2.44e-5 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000127307
Meta Mutation Damage Score 0.0959 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.4%
Validation Efficiency 100% (56/56)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, namely a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A130010J15Rik A G 1: 192,857,154 (GRCm39) I169V probably benign Het
Arrdc5 A G 17: 56,604,856 (GRCm39) S144P probably benign Het
Astn1 A G 1: 158,495,179 (GRCm39) M92V probably benign Het
Atg5 A G 10: 44,195,544 (GRCm39) I189M probably damaging Het
Atmin A G 8: 117,684,277 (GRCm39) T646A probably damaging Het
Atp1a2 G A 1: 172,115,000 (GRCm39) R262W probably damaging Het
Atp6v1g2 A G 17: 35,455,785 (GRCm39) K16E probably damaging Het
Bex6 G A 16: 32,005,278 (GRCm39) E29K possibly damaging Het
Casd1 A G 6: 4,608,705 (GRCm39) Y101C probably damaging Het
Ccdc168 A C 1: 44,098,890 (GRCm39) I736S probably benign Het
Cdx1 T C 18: 61,168,984 (GRCm39) D70G possibly damaging Het
Cebpz T C 17: 79,242,983 (GRCm39) T224A probably benign Het
Cep170b T C 12: 112,702,164 (GRCm39) V319A possibly damaging Het
Chrna2 C T 14: 66,386,912 (GRCm39) R353W possibly damaging Het
Chst5 A T 8: 112,617,176 (GRCm39) V148E probably benign Het
Clhc1 T A 11: 29,507,771 (GRCm39) W162R probably benign Het
Csmd1 T A 8: 16,129,992 (GRCm39) Q1710L probably damaging Het
Ddb1 A C 19: 10,590,300 (GRCm39) M276L probably benign Het
Dot1l C T 10: 80,621,712 (GRCm39) R455C probably damaging Het
Dync2h1 A G 9: 7,148,735 (GRCm39) V903A probably benign Het
Eno1b T C 18: 48,180,542 (GRCm39) V240A possibly damaging Het
Erich1 T G 8: 14,140,527 (GRCm39) probably benign Het
Ermp1 A C 19: 29,617,328 (GRCm39) S227A probably benign Het
Etv1 C A 12: 38,885,115 (GRCm39) P143Q probably null Het
Gimap8 A T 6: 48,627,502 (GRCm39) I159F probably benign Het
Gpr4 G A 7: 18,956,503 (GRCm39) V142M possibly damaging Het
Gucy1a1 C T 3: 82,020,639 (GRCm39) C86Y probably benign Het
Ifngr2 T G 16: 91,358,667 (GRCm39) probably null Het
Insrr A T 3: 87,710,488 (GRCm39) N398I probably damaging Het
Iws1 A G 18: 32,217,719 (GRCm39) E441G probably damaging Het
Larp7-ps A G 4: 92,079,893 (GRCm39) S32P probably damaging Het
Megf10 A T 18: 57,414,785 (GRCm39) K732* probably null Het
Mprip T A 11: 59,640,334 (GRCm39) probably benign Het
Mrgprb8 T C 7: 48,038,953 (GRCm39) V208A probably benign Het
Msc G C 1: 14,825,908 (GRCm39) P22R probably benign Het
Opcml G A 9: 28,812,886 (GRCm39) E193K probably damaging Het
Or4k15b A T 14: 50,272,171 (GRCm39) S230T probably damaging Het
Oxsr1 A C 9: 119,123,560 (GRCm39) H71Q probably benign Het
Pkp2 T A 16: 16,064,831 (GRCm39) W452R probably damaging Het
Prrc2b C T 2: 32,072,582 (GRCm39) T20I probably damaging Het
Rasgrp3 T C 17: 75,810,136 (GRCm39) S279P probably damaging Het
Rtl1 T A 12: 109,557,831 (GRCm39) D1336V unknown Het
Serpina3m G T 12: 104,355,529 (GRCm39) K65N probably benign Het
Serpine2 A G 1: 79,788,411 (GRCm39) V182A probably damaging Het
Slc10a1 A G 12: 81,002,822 (GRCm39) V272A possibly damaging Het
Slc25a29 A T 12: 108,793,358 (GRCm39) N73K probably damaging Het
Slit1 G A 19: 41,594,819 (GRCm39) R1184W probably damaging Het
Srrm2 T C 17: 24,031,403 (GRCm39) probably benign Het
Stk11ip A G 1: 75,502,165 (GRCm39) probably benign Het
Tcerg1 A G 18: 42,697,210 (GRCm39) K767R possibly damaging Het
Tmem82 T C 4: 141,343,598 (GRCm39) K224R probably benign Het
Tmprss11g A G 5: 86,647,415 (GRCm39) L41S probably damaging Het
Ttn T C 2: 76,660,432 (GRCm39) T7430A probably benign Het
Wwp1 T C 4: 19,650,390 (GRCm39) T259A probably benign Het
Other mutations in Trim42
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02289:Trim42 APN 9 97,241,286 (GRCm39) missense probably damaging 0.97
IGL02987:Trim42 APN 9 97,247,868 (GRCm39) missense probably benign 0.28
R0116:Trim42 UTSW 9 97,245,456 (GRCm39) missense possibly damaging 0.89
R0791:Trim42 UTSW 9 97,247,732 (GRCm39) missense probably damaging 1.00
R1170:Trim42 UTSW 9 97,245,673 (GRCm39) missense probably benign 0.04
R1397:Trim42 UTSW 9 97,247,674 (GRCm39) missense probably damaging 1.00
R1499:Trim42 UTSW 9 97,248,138 (GRCm39) missense possibly damaging 0.95
R1522:Trim42 UTSW 9 97,247,732 (GRCm39) missense probably damaging 1.00
R2355:Trim42 UTSW 9 97,241,293 (GRCm39) missense probably damaging 1.00
R4621:Trim42 UTSW 9 97,245,201 (GRCm39) missense probably benign
R4649:Trim42 UTSW 9 97,244,998 (GRCm39) missense probably benign 0.00
R4840:Trim42 UTSW 9 97,244,982 (GRCm39) missense probably benign 0.02
R6147:Trim42 UTSW 9 97,245,382 (GRCm39) missense probably benign
R7048:Trim42 UTSW 9 97,245,474 (GRCm39) missense probably damaging 1.00
R7235:Trim42 UTSW 9 97,251,761 (GRCm39) missense probably damaging 0.99
R7276:Trim42 UTSW 9 97,251,625 (GRCm39) nonsense probably null
R7390:Trim42 UTSW 9 97,241,182 (GRCm39) missense probably damaging 1.00
R7442:Trim42 UTSW 9 97,244,998 (GRCm39) missense probably damaging 0.97
R7650:Trim42 UTSW 9 97,245,201 (GRCm39) missense probably benign
R7881:Trim42 UTSW 9 97,245,070 (GRCm39) missense possibly damaging 0.83
R8060:Trim42 UTSW 9 97,245,532 (GRCm39) missense probably damaging 1.00
R8427:Trim42 UTSW 9 97,245,174 (GRCm39) missense probably benign 0.25
R8751:Trim42 UTSW 9 97,251,852 (GRCm39) missense possibly damaging 0.94
R8850:Trim42 UTSW 9 97,248,047 (GRCm39) missense probably damaging 1.00
R8856:Trim42 UTSW 9 97,245,275 (GRCm39) nonsense probably null
R8941:Trim42 UTSW 9 97,245,100 (GRCm39) missense probably benign 0.00
R9329:Trim42 UTSW 9 97,251,584 (GRCm39) missense probably benign 0.37
R9427:Trim42 UTSW 9 97,247,874 (GRCm39) missense probably damaging 0.99
R9792:Trim42 UTSW 9 97,245,429 (GRCm39) missense probably damaging 1.00
R9793:Trim42 UTSW 9 97,245,429 (GRCm39) missense probably damaging 1.00
Z1088:Trim42 UTSW 9 97,251,675 (GRCm39) missense probably benign 0.00
Z1177:Trim42 UTSW 9 97,244,959 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGCACAGGTTGAGACGACAG -3'
(R):5'- TACTCAGATGGATGAACCCAAGAC -3'

Sequencing Primer
(F):5'- CACAGCGCTTGTAGGCAATG -3'
(R):5'- GATGGATGAACCCAAGACCATGC -3'
Posted On 2014-09-18