Incidental Mutation 'R2095:Klf3'
ID232033
Institutional Source Beutler Lab
Gene Symbol Klf3
Ensembl Gene ENSMUSG00000029178
Gene NameKruppel-like factor 3 (basic)
SynonymsBKLF, 9930027G08Rik, Bklf, Tef-2
MMRRC Submission 040099-MU
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.297) question?
Stock #R2095 (G1)
Quality Score225
Status Validated
Chromosome5
Chromosomal Location64803388-64832901 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 64821902 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Lysine at position 29 (M29K)
Ref Sequence ENSEMBL: ENSMUSP00000142369 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000165536] [ENSMUST00000166409] [ENSMUST00000197879] [ENSMUST00000198946] [ENSMUST00000200384]
Predicted Effect probably benign
Transcript: ENSMUST00000165536
AA Change: M29K

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000129363
Gene: ENSMUSG00000029178
AA Change: M29K

DomainStartEndE-ValueType
low complexity region 70 81 N/A INTRINSIC
low complexity region 91 111 N/A INTRINSIC
low complexity region 138 153 N/A INTRINSIC
ZnF_C2H2 259 283 6.32e-3 SMART
ZnF_C2H2 289 313 1.6e-4 SMART
ZnF_C2H2 319 341 8.47e-4 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000166409
AA Change: M29K

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000128429
Gene: ENSMUSG00000029178
AA Change: M29K

DomainStartEndE-ValueType
low complexity region 70 81 N/A INTRINSIC
low complexity region 91 111 N/A INTRINSIC
low complexity region 138 153 N/A INTRINSIC
ZnF_C2H2 259 283 6.32e-3 SMART
ZnF_C2H2 289 313 1.6e-4 SMART
ZnF_C2H2 319 341 8.47e-4 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000196764
Predicted Effect noncoding transcript
Transcript: ENSMUST00000197869
Predicted Effect probably benign
Transcript: ENSMUST00000197879
AA Change: M29K

PolyPhen 2 Score 0.151 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000142369
Gene: ENSMUSG00000029178
AA Change: M29K

DomainStartEndE-ValueType
low complexity region 70 81 N/A INTRINSIC
low complexity region 91 111 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000198946
SMART Domains Protein: ENSMUSP00000142651
Gene: ENSMUSG00000029178

DomainStartEndE-ValueType
ZnF_C2H2 53 77 2.7e-5 SMART
ZnF_C2H2 83 107 6.9e-7 SMART
ZnF_C2H2 113 135 3.7e-6 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000200384
Predicted Effect noncoding transcript
Transcript: ENSMUST00000200587
Predicted Effect noncoding transcript
Transcript: ENSMUST00000200677
Meta Mutation Damage Score 0.1014 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.5%
  • 20x: 95.6%
Validation Efficiency 97% (58/60)
MGI Phenotype PHENOTYPE: Homozygous null mice display reduced viability, body size and white adipose tissue. Mice homozygous for a gene trap allele exhibit cardiac defects, reduced body size and abnormal red blood cells. Mice heterozygous for an ENU-induced allele exhibit lethality with heart defects. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
9530002B09Rik C A 4: 122,702,358 Y127* probably null Het
Adam33 C T 2: 131,053,709 G562D probably damaging Het
Adh1 T C 3: 138,282,796 F177L probably damaging Het
Arhgef17 T C 7: 100,881,263 T1439A probably damaging Het
Arl5c C T 11: 97,993,451 E105K probably damaging Het
Armc3 T A 2: 19,288,929 D510E possibly damaging Het
Bbx T C 16: 50,224,689 E395G possibly damaging Het
Cacna2d2 G A 9: 107,527,165 E1087K probably benign Het
Casq1 T C 1: 172,215,962 N113S probably benign Het
Cbfa2t3 A G 8: 122,634,988 S432P probably benign Het
Cd163 A G 6: 124,317,822 D615G probably damaging Het
Chrnb2 A T 3: 89,761,437 D190E probably benign Het
Clec9a T C 6: 129,416,358 L115P possibly damaging Het
Cluh C T 11: 74,661,724 R532* probably null Het
Cntnap5a T A 1: 116,442,260 L869Q probably damaging Het
Ctgf T C 10: 24,596,479 V140A probably benign Het
Cyp3a57 A T 5: 145,369,134 K143* probably null Het
Dcaf12 G T 4: 41,294,085 H351N probably benign Het
Dtna T A 18: 23,569,748 L112Q probably damaging Het
Fnta G A 8: 25,999,879 Q303* probably null Het
Frs2 T C 10: 117,074,602 E285G probably benign Het
Gabra4 T C 5: 71,624,112 I293V probably damaging Het
Gm2431 A T 7: 142,257,781 C129S unknown Het
Gnl2 C T 4: 125,034,318 R49C probably damaging Het
Helz T A 11: 107,646,146 Y275N probably damaging Het
Hydin A G 8: 110,462,657 E1231G probably damaging Het
Kctd11 T A 11: 69,879,576 D212V probably damaging Het
Klhl21 T C 4: 152,009,393 S151P probably benign Het
Lsm14b A T 2: 180,031,787 probably benign Het
Mlxipl T C 5: 135,122,120 probably benign Het
Mov10 G A 3: 104,801,531 R389C probably damaging Het
Msh6 A G 17: 87,988,233 M1071V possibly damaging Het
Myh8 G T 11: 67,286,224 A401S probably benign Het
Ndufv3 T C 17: 31,527,486 S117P possibly damaging Het
Obscn A T 11: 59,093,584 probably null Het
Olfr1205 T C 2: 88,831,290 Y58H probably damaging Het
Olfr150 T A 9: 39,737,261 Y149N probably damaging Het
Olfr166 T C 16: 19,486,931 I31T probably benign Het
Olfr381 T A 11: 73,486,594 T77S probably damaging Het
Pcdhb17 T A 18: 37,486,322 D388E probably benign Het
Pgm3 T C 9: 86,556,341 T423A probably damaging Het
Rufy4 T C 1: 74,147,663 C537R probably damaging Het
S1pr5 T A 9: 21,244,858 T91S probably benign Het
Sgcz T C 8: 37,540,392 probably benign Het
Slc33a1 A G 3: 63,963,955 L79P probably damaging Het
Slco2a1 A G 9: 103,076,968 T383A probably benign Het
Slit1 G A 19: 41,606,380 R1184W probably damaging Het
Spta1 T A 1: 174,244,198 M2248K possibly damaging Het
Stub1 A G 17: 25,830,890 Y304H probably damaging Het
Taar7e T A 10: 24,038,051 Y146* probably null Het
Tbc1d1 C T 5: 64,316,501 S660L probably benign Het
Tcea2 C A 2: 181,686,932 F259L probably damaging Het
Tcp11l1 T A 2: 104,681,840 K482N probably damaging Het
Trpv6 C T 6: 41,621,756 R645Q probably damaging Het
Uaca T A 9: 60,840,843 S30T probably benign Het
Ubap2 C G 4: 41,206,901 V492L possibly damaging Het
Ube3c T C 5: 29,668,040 F1026S probably damaging Het
Vmn2r8 T G 5: 108,808,621 D45A possibly damaging Het
Zfp738 G T 13: 67,671,303 L180I probably damaging Het
Other mutations in Klf3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01124:Klf3 APN 5 64816780 missense possibly damaging 0.52
IGL01967:Klf3 APN 5 64822087 missense probably damaging 0.99
IGL02331:Klf3 APN 5 64829072 missense probably damaging 1.00
R0126:Klf3 UTSW 5 64822103 missense probably benign 0.15
R1883:Klf3 UTSW 5 64822881 missense probably damaging 1.00
R2102:Klf3 UTSW 5 64821923 missense probably damaging 0.96
R3767:Klf3 UTSW 5 64827217 unclassified probably null
R3768:Klf3 UTSW 5 64827217 unclassified probably null
R3769:Klf3 UTSW 5 64827217 unclassified probably null
R3770:Klf3 UTSW 5 64827217 unclassified probably null
R4405:Klf3 UTSW 5 64829004 missense possibly damaging 0.93
R5936:Klf3 UTSW 5 64822960 missense probably damaging 1.00
R6484:Klf3 UTSW 5 64823029 missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- AGCCATCAGCCTTCTCACTG -3'
(R):5'- GGGCGAGTACTTCTTAATGGGC -3'

Sequencing Primer
(F):5'- TTTTGGGGATCACACACC -3'
(R):5'- ACTTCTTAATGGGCGGACTG -3'
Posted On2014-09-18