Incidental Mutation 'R2095:Clec9a'
ID232042
Institutional Source Beutler Lab
Gene Symbol Clec9a
Ensembl Gene ENSMUSG00000046080
Gene NameC-type lectin domain family 9, member a
Synonyms9830005G06Rik, DNGR-1
MMRRC Submission 040099-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R2095 (G1)
Quality Score158
Status Validated
Chromosome6
Chromosomal Location129408862-129424763 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 129416358 bp
ZygosityHeterozygous
Amino Acid Change Leucine to Proline at position 115 (L115P)
Ref Sequence ENSEMBL: ENSMUSP00000056625 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000058352] [ENSMUST00000088075] [ENSMUST00000164513] [ENSMUST00000204860]
Predicted Effect possibly damaging
Transcript: ENSMUST00000058352
AA Change: L115P

PolyPhen 2 Score 0.840 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000056625
Gene: ENSMUSG00000046080
AA Change: L115P

DomainStartEndE-ValueType
transmembrane domain 32 54 N/A INTRINSIC
CLECT 137 256 8.6e-24 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000088075
SMART Domains Protein: ENSMUSP00000085394
Gene: ENSMUSG00000046080

DomainStartEndE-ValueType
transmembrane domain 32 54 N/A INTRINSIC
CLECT 111 230 8.6e-24 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000164513
AA Change: L88P

PolyPhen 2 Score 0.306 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000128622
Gene: ENSMUSG00000046080
AA Change: L88P

DomainStartEndE-ValueType
CLECT 110 229 8.6e-24 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203592
Predicted Effect probably benign
Transcript: ENSMUST00000204860
SMART Domains Protein: ENSMUSP00000144990
Gene: ENSMUSG00000046080

DomainStartEndE-ValueType
transmembrane domain 32 54 N/A INTRINSIC
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.5%
  • 20x: 95.6%
Validation Efficiency 97% (58/60)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] CLEC9A is a group V C-type lectin-like receptor (CTLR) that functions as an activation receptor and is expressed on myeloid lineage cells (Huysamen et al., 2008 [PubMed 18408006]).[supplied by OMIM, Aug 2008]
PHENOTYPE: Homozygous null mice have CD8alpha+ dendritic cells that are defective in cross-presentation of dead-cell associated antigens. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
9530002B09Rik C A 4: 122,702,358 Y127* probably null Het
Adam33 C T 2: 131,053,709 G562D probably damaging Het
Adh1 T C 3: 138,282,796 F177L probably damaging Het
Arhgef17 T C 7: 100,881,263 T1439A probably damaging Het
Arl5c C T 11: 97,993,451 E105K probably damaging Het
Armc3 T A 2: 19,288,929 D510E possibly damaging Het
Bbx T C 16: 50,224,689 E395G possibly damaging Het
Cacna2d2 G A 9: 107,527,165 E1087K probably benign Het
Casq1 T C 1: 172,215,962 N113S probably benign Het
Cbfa2t3 A G 8: 122,634,988 S432P probably benign Het
Cd163 A G 6: 124,317,822 D615G probably damaging Het
Chrnb2 A T 3: 89,761,437 D190E probably benign Het
Cluh C T 11: 74,661,724 R532* probably null Het
Cntnap5a T A 1: 116,442,260 L869Q probably damaging Het
Ctgf T C 10: 24,596,479 V140A probably benign Het
Cyp3a57 A T 5: 145,369,134 K143* probably null Het
Dcaf12 G T 4: 41,294,085 H351N probably benign Het
Dtna T A 18: 23,569,748 L112Q probably damaging Het
Fnta G A 8: 25,999,879 Q303* probably null Het
Frs2 T C 10: 117,074,602 E285G probably benign Het
Gabra4 T C 5: 71,624,112 I293V probably damaging Het
Gm2431 A T 7: 142,257,781 C129S unknown Het
Gnl2 C T 4: 125,034,318 R49C probably damaging Het
Helz T A 11: 107,646,146 Y275N probably damaging Het
Hydin A G 8: 110,462,657 E1231G probably damaging Het
Kctd11 T A 11: 69,879,576 D212V probably damaging Het
Klf3 T A 5: 64,821,902 M29K probably benign Het
Klhl21 T C 4: 152,009,393 S151P probably benign Het
Lsm14b A T 2: 180,031,787 probably benign Het
Mlxipl T C 5: 135,122,120 probably benign Het
Mov10 G A 3: 104,801,531 R389C probably damaging Het
Msh6 A G 17: 87,988,233 M1071V possibly damaging Het
Myh8 G T 11: 67,286,224 A401S probably benign Het
Ndufv3 T C 17: 31,527,486 S117P possibly damaging Het
Obscn A T 11: 59,093,584 probably null Het
Olfr1205 T C 2: 88,831,290 Y58H probably damaging Het
Olfr150 T A 9: 39,737,261 Y149N probably damaging Het
Olfr166 T C 16: 19,486,931 I31T probably benign Het
Olfr381 T A 11: 73,486,594 T77S probably damaging Het
Pcdhb17 T A 18: 37,486,322 D388E probably benign Het
Pgm3 T C 9: 86,556,341 T423A probably damaging Het
Rufy4 T C 1: 74,147,663 C537R probably damaging Het
S1pr5 T A 9: 21,244,858 T91S probably benign Het
Sgcz T C 8: 37,540,392 probably benign Het
Slc33a1 A G 3: 63,963,955 L79P probably damaging Het
Slco2a1 A G 9: 103,076,968 T383A probably benign Het
Slit1 G A 19: 41,606,380 R1184W probably damaging Het
Spta1 T A 1: 174,244,198 M2248K possibly damaging Het
Stub1 A G 17: 25,830,890 Y304H probably damaging Het
Taar7e T A 10: 24,038,051 Y146* probably null Het
Tbc1d1 C T 5: 64,316,501 S660L probably benign Het
Tcea2 C A 2: 181,686,932 F259L probably damaging Het
Tcp11l1 T A 2: 104,681,840 K482N probably damaging Het
Trpv6 C T 6: 41,621,756 R645Q probably damaging Het
Uaca T A 9: 60,840,843 S30T probably benign Het
Ubap2 C G 4: 41,206,901 V492L possibly damaging Het
Ube3c T C 5: 29,668,040 F1026S probably damaging Het
Vmn2r8 T G 5: 108,808,621 D45A possibly damaging Het
Zfp738 G T 13: 67,671,303 L180I probably damaging Het
Other mutations in Clec9a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01676:Clec9a APN 6 129421155 missense probably benign 0.35
PIT4468001:Clec9a UTSW 6 129419634 critical splice donor site probably null
R0408:Clec9a UTSW 6 129419569 missense possibly damaging 0.87
R1131:Clec9a UTSW 6 129410315 missense probably damaging 1.00
R1888:Clec9a UTSW 6 129410286 missense probably benign
R1888:Clec9a UTSW 6 129410286 missense probably benign
R2085:Clec9a UTSW 6 129410311 missense probably benign 0.07
R3418:Clec9a UTSW 6 129421038 intron probably benign
R4731:Clec9a UTSW 6 129416336 missense probably benign 0.13
R6547:Clec9a UTSW 6 129416376 missense probably benign 0.01
R7728:Clec9a UTSW 6 129415235 missense possibly damaging 0.93
Predicted Primers PCR Primer
(F):5'- AGTGACTTGTCTCTCAGGGC -3'
(R):5'- GGGCCTAGACGAAATGCTAAC -3'

Sequencing Primer
(F):5'- TCAGGGCCTCTCTTATTTATAGC -3'
(R):5'- GCCTAGACGAAATGCTAACATCCC -3'
Posted On2014-09-18