Mutagenetix > Incidental Mutation

Incidental Mutation 'R2112:Arhgap24'

232646

Institutional Source

Beutler Lab

Gene Symbol

Arhgap24

Ensembl Gene

ENSMUSG00000057315

Gene Name

Rho GTPase activating protein 24

Synonyms

0610025G21Rik

MMRRC Submission

040116-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2112 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

102629257-103045803 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 103040366 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 434 (R434S)

Ref Sequence

ENSEMBL: ENSMUSP00000108475 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070000] [ENSMUST00000073302] [ENSMUST00000094559] [ENSMUST00000112852] [ENSMUST00000112853] [ENSMUST00000112854]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000070000
AA Change: R437S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000070048
Gene: ENSMUSG00000057315
AA Change: R437S

Domain	Start	End	E-Value	Type
RhoGAP	58	234	7.04e-67	SMART
low complexity region	476	487	N/A	INTRINSIC
low complexity region	520	539	N/A	INTRINSIC
coiled coil region	558	638	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000073302
AA Change: R434S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000073028
Gene: ENSMUSG00000057315
AA Change: R434S

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000094559
AA Change: R527S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000092138
Gene: ENSMUSG00000057315
AA Change: R527S

Domain	Start	End	E-Value	Type
PH	18	125	5.35e-23	SMART
RhoGAP	148	324	7.04e-67	SMART
low complexity region	566	577	N/A	INTRINSIC
low complexity region	610	629	N/A	INTRINSIC
coiled coil region	648	728	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112852
AA Change: R434S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108473
Gene: ENSMUSG00000057315
AA Change: R434S

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112853
AA Change: R434S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108474
Gene: ENSMUSG00000057315
AA Change: R434S

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112854
AA Change: R434S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108475
Gene: ENSMUSG00000057315
AA Change: R434S

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a Rho-GTPase activating protein, which is specific for the small GTPase family member Rac. Binding of the encoded protein by filamin A targets it to sites of membrane protrusion, where it antognizes Rac. This results in suppression of lamellae formation and promotion of retraction to regulate cell polarity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam1b	A	G	5: 121,638,777 (GRCm39)		probably benign	Het
Adprhl1	A	G	8: 13,298,694 (GRCm39)	Y79H	probably damaging	Het
Ambra1	T	A	2: 91,706,132 (GRCm39)	W746R	probably damaging	Het
Ankhd1	A	T	18: 36,774,679 (GRCm39)	K1420I	probably damaging	Het
Ap1b1	T	C	11: 4,965,613 (GRCm39)	F51L	probably damaging	Het
Arhgap29	T	C	3: 121,805,210 (GRCm39)	L525P	probably benign	Het
Arpc1b	T	C	5: 145,060,579 (GRCm39)	Y124H	probably damaging	Het
Arr3	T	A	X: 99,658,247 (GRCm39)	F269L	possibly damaging	Het
Atp11b	G	T	3: 35,891,677 (GRCm39)	V830F	probably damaging	Het
Ccdc71l	T	A	12: 32,429,229 (GRCm39)	F83I	probably damaging	Het
Cdh23	G	T	10: 60,141,362 (GRCm39)	F3127L	probably damaging	Het
Cfap251	G	A	5: 123,392,438 (GRCm39)		probably benign	Het
Cldn15	T	A	5: 136,997,016 (GRCm39)	M19K	possibly damaging	Het
Cog4	A	G	8: 111,585,214 (GRCm39)	Y292C	possibly damaging	Het
Col12a1	A	G	9: 79,551,181 (GRCm39)	V2145A	possibly damaging	Het
Col5a3	T	C	9: 20,721,073 (GRCm39)	I110V	unknown	Het
Cps1	T	A	1: 67,216,139 (GRCm39)	D821E	probably benign	Het
Crnkl1	A	T	2: 145,772,617 (GRCm39)	Y153*	probably null	Het
Dock10	T	A	1: 80,483,359 (GRCm39)	K2082M	probably damaging	Het
Dock10	T	C	1: 80,483,360 (GRCm39)	K2083E	probably damaging	Het
Dst	T	C	1: 34,208,259 (GRCm39)	S737P	probably damaging	Het
Dthd1	T	C	5: 62,979,251 (GRCm39)	Y304H	probably damaging	Het
Dthd1	T	C	5: 63,000,222 (GRCm39)	S515P	probably damaging	Het
Etf1	A	T	18: 35,042,154 (GRCm39)		probably null	Het
Fmnl2	A	G	2: 52,995,549 (GRCm39)	E424G	probably damaging	Het
Galt	A	G	4: 41,758,245 (GRCm39)	T337A	probably benign	Het
Gbp4	A	G	5: 105,283,042 (GRCm39)	L76P	possibly damaging	Het
Gcfc2	C	A	6: 81,900,759 (GRCm39)	D24E	probably benign	Het
Gigyf2	A	G	1: 87,368,452 (GRCm39)	H1044R	probably damaging	Het
Glg1	T	C	8: 111,919,178 (GRCm39)	D315G	probably damaging	Het
Gm4787	C	T	12: 81,424,607 (GRCm39)	C517Y	probably damaging	Het
Gnl3l	A	G	X: 149,780,290 (GRCm39)	S217P	probably damaging	Het
Gpr37	T	C	6: 25,669,380 (GRCm39)	Y488C	possibly damaging	Het
Hap1	T	C	11: 100,244,825 (GRCm39)	D240G	probably benign	Het
Hhla1	C	G	15: 65,808,232 (GRCm39)	W271S	probably benign	Het
Hmgxb3	T	C	18: 61,288,458 (GRCm39)	R470G	possibly damaging	Het
Inpp5a	A	G	7: 139,154,877 (GRCm39)	D332G	probably damaging	Het
Insr	A	G	8: 3,219,748 (GRCm39)	S925P	probably benign	Het
Isoc2b	T	A	7: 4,852,474 (GRCm39)	D171V	probably damaging	Het
Kif20b	T	C	19: 34,909,132 (GRCm39)	I223T	probably benign	Het
Krt6b	T	C	15: 101,586,999 (GRCm39)	T258A	possibly damaging	Het
Lipo4	G	A	19: 33,488,926 (GRCm39)	P219L	probably benign	Het
Luc7l	T	C	17: 26,474,101 (GRCm39)		probably null	Het
Madd	T	C	2: 91,007,321 (GRCm39)	K264E	possibly damaging	Het
Mcf2l	A	T	8: 13,051,867 (GRCm39)	K433N	probably damaging	Het
Mob3b	A	T	4: 35,083,795 (GRCm39)	N131K	probably damaging	Het
Mtus1	G	T	8: 41,475,608 (GRCm39)	P819T	probably damaging	Het
Myo15a	T	C	11: 60,384,994 (GRCm39)	F1699L	probably damaging	Het
Nav1	C	T	1: 135,376,742 (GRCm39)	R1694Q	probably damaging	Het
Neb	G	C	2: 52,218,776 (GRCm39)	T78S	probably damaging	Het
Nek2	T	C	1: 191,559,320 (GRCm39)	V275A	probably benign	Het
Nfatc1	A	T	18: 80,678,879 (GRCm39)	C836*	probably null	Het
Nos1	T	C	5: 118,074,636 (GRCm39)	V1060A	probably benign	Het
Notch3	T	A	17: 32,363,584 (GRCm39)	I1160F	probably benign	Het
Nox4	T	C	7: 87,021,216 (GRCm39)	L476P	probably damaging	Het
Npc1	A	T	18: 12,346,529 (GRCm39)	N222K	possibly damaging	Het
Nrn1l	C	A	8: 106,621,378 (GRCm39)	H109Q	possibly damaging	Het
Or4c11	T	C	2: 88,695,545 (GRCm39)	S199P	possibly damaging	Het
Or4k15	G	T	14: 50,364,080 (GRCm39)	L15F	probably damaging	Het
Or6d13	T	C	6: 116,517,611 (GRCm39)	Y66H	possibly damaging	Het
Or7a41	T	C	10: 78,871,248 (GRCm39)	L206P	probably damaging	Het
Or8g27	T	C	9: 39,129,075 (GRCm39)	Y141H	probably benign	Het
Or8g33	C	A	9: 39,337,966 (GRCm39)	V134L	probably benign	Het
Pcnt	T	C	10: 76,256,360 (GRCm39)	K627E	probably damaging	Het
Plch1	T	A	3: 63,630,227 (GRCm39)	T514S	probably damaging	Het
Ppargc1b	G	A	18: 61,444,321 (GRCm39)	P297S	probably benign	Het
Ppig	A	G	2: 69,580,451 (GRCm39)	T662A	unknown	Het
Prdm2	A	C	4: 142,858,506 (GRCm39)	S1595A	probably benign	Het
Ptpn5	T	A	7: 46,732,890 (GRCm39)	T318S	probably benign	Het
Ralgps2	A	G	1: 156,660,278 (GRCm39)	Y265H	probably damaging	Het
Seh1l	T	C	18: 67,920,249 (GRCm39)	I182T	probably damaging	Het
Slc12a6	T	C	2: 112,186,830 (GRCm39)	I943T	probably damaging	Het
Slc5a5	A	T	8: 71,342,395 (GRCm39)		probably null	Het
Sparcl1	T	A	5: 104,236,289 (GRCm39)	Q488L	probably damaging	Het
Sphkap	T	G	1: 83,253,602 (GRCm39)	K1382N	probably benign	Het
Sybu	T	C	15: 44,536,731 (GRCm39)	S532G	probably benign	Het
Syde2	G	A	3: 145,704,241 (GRCm39)	G131S	possibly damaging	Het
Taok1	C	T	11: 77,462,472 (GRCm39)	V206I	probably benign	Het
Tas1r2	G	T	4: 139,382,666 (GRCm39)	M101I	probably benign	Het
Trpc6	C	T	9: 8,656,613 (GRCm39)	T680I	probably damaging	Het
Trub1	T	C	19: 57,473,646 (GRCm39)		probably null	Het
Tspan1	G	T	4: 116,020,885 (GRCm39)		probably null	Het
Ttc28	G	A	5: 111,424,139 (GRCm39)	E1438K	probably damaging	Het
Ubr3	A	G	2: 69,808,136 (GRCm39)	T1206A	possibly damaging	Het
Ulbp3	C	T	10: 3,076,459 (GRCm39)		noncoding transcript	Het
Usp40	A	G	1: 87,877,936 (GRCm39)	I1117T	probably benign	Het
Usp43	G	T	11: 67,812,536 (GRCm39)	N113K	probably damaging	Het
Vcan	T	A	13: 89,841,422 (GRCm39)	D414V	probably damaging	Het
Vmn1r202	T	A	13: 22,685,904 (GRCm39)	Y171F	possibly damaging	Het
Zfp142	A	G	1: 74,612,795 (GRCm39)	S451P	probably damaging	Het
Zfp516	A	G	18: 82,975,536 (GRCm39)	D578G	probably damaging	Het
Zfp90	G	A	8: 107,152,120 (GRCm39)	C611Y	probably damaging	Het
Zfp954	A	G	7: 7,118,609 (GRCm39)	C312R	probably damaging	Het
Zmym3	A	T	X: 100,450,993 (GRCm39)	V1208D	probably damaging	Het

Other mutations in Arhgap24

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00163:Arhgap24	APN	5	103,008,265 (GRCm39)	missense	possibly damaging	0.94
IGL01483:Arhgap24	APN	5	103,008,243 (GRCm39)	missense	possibly damaging	0.91
IGL02641:Arhgap24	APN	5	103,040,386 (GRCm39)	missense	probably damaging	1.00
IGL03166:Arhgap24	APN	5	103,023,552 (GRCm39)	splice site	probably benign
bullmarket	UTSW	5	103,023,643 (GRCm39)	missense	probably damaging	0.99
buyers	UTSW	5	103,045,086 (GRCm39)	missense	probably damaging	1.00
wallstreet	UTSW	5	102,700,163 (GRCm39)	splice site	probably null
BB009:Arhgap24	UTSW	5	102,993,835 (GRCm39)	intron	probably benign
BB019:Arhgap24	UTSW	5	102,993,835 (GRCm39)	intron	probably benign
R0506:Arhgap24	UTSW	5	103,023,643 (GRCm39)	missense	probably damaging	0.99
R0606:Arhgap24	UTSW	5	103,045,086 (GRCm39)	missense	probably damaging	1.00
R1457:Arhgap24	UTSW	5	102,811,972 (GRCm39)	missense	probably damaging	0.98
R1491:Arhgap24	UTSW	5	103,008,198 (GRCm39)	missense	possibly damaging	0.47
R1707:Arhgap24	UTSW	5	103,039,953 (GRCm39)	missense	probably benign	0.40
R2300:Arhgap24	UTSW	5	103,008,291 (GRCm39)	missense	probably damaging	1.00
R2516:Arhgap24	UTSW	5	103,039,776 (GRCm39)	missense	probably benign
R3803:Arhgap24	UTSW	5	103,040,308 (GRCm39)	missense	probably damaging	0.98
R4257:Arhgap24	UTSW	5	102,811,983 (GRCm39)	missense	probably benign	0.00
R4761:Arhgap24	UTSW	5	102,812,080 (GRCm39)	intron	probably benign
R5045:Arhgap24	UTSW	5	103,039,743 (GRCm39)	missense	possibly damaging	0.79
R5121:Arhgap24	UTSW	5	102,989,201 (GRCm39)	missense	probably damaging	1.00
R5209:Arhgap24	UTSW	5	103,040,015 (GRCm39)	missense	probably benign	0.12
R5667:Arhgap24	UTSW	5	102,994,037 (GRCm39)	critical splice donor site	probably null
R5914:Arhgap24	UTSW	5	102,700,025 (GRCm39)	splice site	probably null
R6039:Arhgap24	UTSW	5	103,028,652 (GRCm39)	missense	probably damaging	0.98
R6039:Arhgap24	UTSW	5	103,028,652 (GRCm39)	missense	probably damaging	0.98
R6158:Arhgap24	UTSW	5	103,040,778 (GRCm39)	missense	probably benign	0.12
R6410:Arhgap24	UTSW	5	103,040,017 (GRCm39)	missense	probably benign	0.10
R6450:Arhgap24	UTSW	5	103,044,990 (GRCm39)	missense	probably benign	0.01
R6520:Arhgap24	UTSW	5	103,028,659 (GRCm39)	missense	probably benign	0.00
R6666:Arhgap24	UTSW	5	102,700,163 (GRCm39)	splice site	probably null
R7233:Arhgap24	UTSW	5	103,026,367 (GRCm39)	missense	probably benign	0.03
R7311:Arhgap24	UTSW	5	103,040,551 (GRCm39)	missense	probably damaging	1.00
R7460:Arhgap24	UTSW	5	103,040,212 (GRCm39)	missense	probably benign	0.36
R7483:Arhgap24	UTSW	5	102,989,174 (GRCm39)	missense	probably benign	0.13
R7515:Arhgap24	UTSW	5	102,993,882 (GRCm39)	intron	probably benign
R7667:Arhgap24	UTSW	5	103,026,323 (GRCm39)	missense	probably benign
R7932:Arhgap24	UTSW	5	102,993,835 (GRCm39)	intron	probably benign
R8227:Arhgap24	UTSW	5	103,023,647 (GRCm39)	missense	probably benign	0.02
R8289:Arhgap24	UTSW	5	103,028,692 (GRCm39)	missense	possibly damaging	0.88
R8431:Arhgap24	UTSW	5	103,040,464 (GRCm39)	missense	possibly damaging	0.49
R8721:Arhgap24	UTSW	5	103,023,565 (GRCm39)	missense	possibly damaging	0.46
R8767:Arhgap24	UTSW	5	103,039,740 (GRCm39)	missense	probably benign
R8954:Arhgap24	UTSW	5	103,040,136 (GRCm39)	missense	probably benign	0.00
R9120:Arhgap24	UTSW	5	103,040,016 (GRCm39)	missense	probably benign	0.05
R9306:Arhgap24	UTSW	5	102,994,008 (GRCm39)	missense	possibly damaging	0.91
R9687:Arhgap24	UTSW	5	102,994,022 (GRCm39)	missense	probably benign
Z1176:Arhgap24	UTSW	5	103,028,673 (GRCm39)	missense	probably benign	0.00
Z1176:Arhgap24	UTSW	5	103,023,625 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TGGTACCAAAATGGGCACTC -3'
(R):5'- AAGATCATCCTGAGGTGGGC -3'

Sequencing Primer
(F):5'- TCACAGTGTACAGAATGGCAC -3'
(R):5'- GTCTAAAACAGGGTCCTCAAAGTTC -3'

Posted On

2014-09-18