Mutagenetix > Incidental Mutation

Incidental Mutation 'R2152:Sidt2'

234406

Institutional Source

Beutler Lab

Gene Symbol

Sidt2

Ensembl Gene

ENSMUSG00000034908

Gene Name

SID1 transmembrane family, member 2

Synonyms

CGI-40

MMRRC Submission

040155-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.176) question?

Stock #

R2152 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

45849155-45866556 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 45856638 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 477 (D477G)

Ref Sequence

ENSEMBL: ENSMUSP00000124750 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038488] [ENSMUST00000114573] [ENSMUST00000160138] [ENSMUST00000160618] [ENSMUST00000162072] [ENSMUST00000162379] [ENSMUST00000162529]

AlphaFold

Q8CIF6

Predicted Effect

probably damaging
Transcript: ENSMUST00000038488
AA Change: D433G

PolyPhen 2 Score 0.983 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000044290
Gene: ENSMUSG00000034908
AA Change: D433G

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	169	832	8.5e-214	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000114573
AA Change: D454G

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000110220
Gene: ENSMUSG00000034908
AA Change: D454G

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	169	853	9e-290	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159033

SMART Domains

Protein: ENSMUSP00000125273
Gene: ENSMUSG00000034908

Domain	Start	End	E-Value	Type
low complexity region	12	29	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	30	74	1e-23	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000160138
AA Change: D156G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000124945
Gene: ENSMUSG00000034908
AA Change: D156G

Domain	Start	End	E-Value	Type
low complexity region	131	142	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160598

Predicted Effect

probably damaging
Transcript: ENSMUST00000160618
AA Change: D61G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000125037
Gene: ENSMUSG00000034908
AA Change: D61G

Domain	Start	End	E-Value	Type
low complexity region	36	47	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160670

Predicted Effect

probably damaging
Transcript: ENSMUST00000162072
AA Change: D477G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000124750
Gene: ENSMUSG00000034908
AA Change: D477G

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	169	338	2.3e-34	PFAM
low complexity region	452	463	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160927

Predicted Effect

probably benign
Transcript: ENSMUST00000161042

SMART Domains

Protein: ENSMUSP00000124577
Gene: ENSMUSG00000034908

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000162379

SMART Domains

Protein: ENSMUSP00000124503
Gene: ENSMUSG00000034908

Domain	Start	End	E-Value	Type
Pfam:SID-1_RNA_chan	1	135	3.3e-29	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162529

SMART Domains

Protein: ENSMUSP00000125060
Gene: ENSMUSG00000034908

Domain	Start	End	E-Value	Type
Pfam:SID-1_RNA_chan	1	135	9.2e-20	PFAM
low complexity region	202	213	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161606

SMART Domains

Protein: ENSMUSP00000125660
Gene: ENSMUSG00000034908

Domain	Start	End	E-Value	Type
Pfam:SID-1_RNA_chan	1	221	4.7e-29	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.4%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a targeted allele exhibit male-specific decreased body weight and size, impaired glucose tolerance, increased serum glucose, decreased serum insulin and decreased insule granule release from beta cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 108 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ackr3	A	T	1: 90,141,565 (GRCm39)	Y8F	probably benign	Het
Acy1	T	C	9: 106,312,816 (GRCm39)	E175G	probably damaging	Het
Add2	T	C	6: 86,075,580 (GRCm39)	L243P	probably damaging	Het
Adsl	A	G	15: 80,851,863 (GRCm39)	D407G	probably damaging	Het
Afg3l1	T	G	8: 124,221,575 (GRCm39)	I478S	probably damaging	Het
Aoc1l1	T	A	6: 48,953,473 (GRCm39)	I466N	probably damaging	Het
Arfrp1	T	C	2: 181,001,487 (GRCm39)	T108A	probably benign	Het
Art5	A	G	7: 101,747,407 (GRCm39)	L124P	possibly damaging	Het
Asap2	A	T	12: 21,162,084 (GRCm39)	T14S	probably damaging	Het
Atp2c2	A	G	8: 120,482,841 (GRCm39)	N901S	probably benign	Het
Bbs12	G	T	3: 37,375,309 (GRCm39)	E586*	probably null	Het
Bicd2	G	T	13: 49,533,052 (GRCm39)	C546F	probably damaging	Het
Bid	A	T	6: 120,877,215 (GRCm39)	L42Q	probably damaging	Het
Bpifb9a	A	G	2: 154,102,055 (GRCm39)	K51E	probably benign	Het
Calcr	G	T	6: 3,687,615 (GRCm39)	T424K	probably benign	Het
Cd46	A	G	1: 194,744,721 (GRCm39)	I339T	probably benign	Het
Chek1	C	A	9: 36,635,279 (GRCm39)	V35F	probably damaging	Het
Cntn3	A	G	6: 102,183,498 (GRCm39)	I719T	probably damaging	Het
Cyb5r1	T	C	1: 134,337,363 (GRCm39)	I163T	possibly damaging	Het
Cyp2d26	A	T	15: 82,676,907 (GRCm39)		probably null	Het
Dclk1	A	G	3: 55,154,633 (GRCm39)	Y21C	probably damaging	Het
Dgcr2	G	A	16: 17,709,351 (GRCm39)		probably null	Het
Dhx38	T	C	8: 110,287,306 (GRCm39)	S221G	probably benign	Het
Dis3l	T	A	9: 64,214,545 (GRCm39)	N981I	probably benign	Het
Dnah3	C	T	7: 119,551,236 (GRCm39)	V3028I	probably benign	Het
Dnah6	T	C	6: 73,026,149 (GRCm39)	Y3448C	probably benign	Het
Dok5	G	A	2: 170,642,816 (GRCm39)	G38D	probably damaging	Het
Epb41l1	A	G	2: 156,356,048 (GRCm39)	D528G	probably damaging	Het
Fat4	A	T	3: 39,037,544 (GRCm39)	Y3732F	probably damaging	Het
Fcsk	T	A	8: 111,615,704 (GRCm39)	T542S	probably benign	Het
Fgfr4	A	T	13: 55,314,777 (GRCm39)	Y640F	probably damaging	Het
Foxo6	T	A	4: 120,125,811 (GRCm39)	D328V	probably benign	Het
Foxp1	A	G	6: 98,993,502 (GRCm39)	L134P	probably damaging	Het
Frem2	G	A	3: 53,424,450 (GRCm39)	R2996*	probably null	Het
Garem2	T	C	5: 30,313,297 (GRCm39)	S54P	probably damaging	Het
Gcn1	T	A	5: 115,747,888 (GRCm39)	I1765N	probably benign	Het
Gm4787	T	A	12: 81,423,993 (GRCm39)	I722F	probably benign	Het
Gpc6	G	T	14: 117,163,504 (GRCm39)	A53S	probably benign	Het
Gtpbp8	A	G	16: 44,560,390 (GRCm39)		probably null	Het
H2-Q2	T	C	17: 35,564,252 (GRCm39)		probably null	Het
Hapln2	C	A	3: 87,930,920 (GRCm39)	R157L	probably benign	Het
Hemgn	C	A	4: 46,396,607 (GRCm39)	E210*	probably null	Het
Hpse	T	A	5: 100,839,269 (GRCm39)	K360*	probably null	Het
Iqcj	A	T	3: 67,962,643 (GRCm39)	E68V	probably damaging	Het
Kat2a	T	C	11: 100,603,172 (GRCm39)		probably benign	Het
Kat6b	A	T	14: 21,718,735 (GRCm39)	H1138L	probably benign	Het
Kcnab1	A	T	3: 65,278,861 (GRCm39)	I371F	probably damaging	Het
Klhl30	C	A	1: 91,285,546 (GRCm39)	A356D	probably benign	Het
Klra3	G	C	6: 130,310,107 (GRCm39)	R138G	probably benign	Het
Micu1	G	T	10: 59,699,110 (GRCm39)	M468I	probably benign	Het
Mrc1	A	G	2: 14,332,675 (GRCm39)	T1292A	probably damaging	Het
Myh8	G	A	11: 67,185,295 (GRCm39)	E849K	probably damaging	Het
Myom3	G	T	4: 135,530,544 (GRCm39)	R1152L	probably benign	Het
Nedd4l	T	A	18: 65,343,401 (GRCm39)	H820Q	probably damaging	Het
Nlrp4g	T	A	9: 124,353,339 (GRCm38)		noncoding transcript	Het
Oga	A	T	19: 45,746,461 (GRCm39)	Y779*	probably null	Het
Or13p5	C	T	4: 118,592,446 (GRCm39)	A240V	possibly damaging	Het
Or1m1	T	C	9: 18,666,391 (GRCm39)	D180G	probably damaging	Het
Or2a51	A	G	6: 43,179,003 (GRCm39)	I142V	probably benign	Het
Or51a39	G	T	7: 102,362,788 (GRCm39)	H277Q	probably benign	Het
Or52j3	A	T	7: 102,835,847 (GRCm39)	D13V	probably benign	Het
Or8b49	G	T	9: 38,505,707 (GRCm39)	L63F	probably damaging	Het
Or8g54	A	T	9: 39,706,943 (GRCm39)	I91F	probably benign	Het
Or9s23	T	C	1: 92,501,630 (GRCm39)	S246P	probably damaging	Het
Otop1	T	A	5: 38,460,194 (GRCm39)	M587K	probably damaging	Het
Pgm5	T	A	19: 24,812,179 (GRCm39)	I118F	probably damaging	Het
Phc2	A	G	4: 128,638,859 (GRCm39)	*41W	probably null	Het
Phf8-ps	T	A	17: 33,285,908 (GRCm39)	D298V	probably damaging	Het
Piezo2	A	T	18: 63,247,112 (GRCm39)	M532K	probably damaging	Het
Pjvk	A	T	2: 76,488,713 (GRCm39)	I295F	probably benign	Het
Popdc2	A	G	16: 38,183,482 (GRCm39)	N155S	possibly damaging	Het
Ppp4r3a	G	T	12: 101,008,826 (GRCm39)	N684K	probably damaging	Het
Prpf4b	T	A	13: 35,084,402 (GRCm39)	M930K	probably benign	Het
Ptpn12	C	A	5: 21,207,466 (GRCm39)	Q297H	probably damaging	Het
Ptprz1	C	A	6: 23,030,670 (GRCm39)	L1010I	probably damaging	Het
Rabepk	A	T	2: 34,674,562 (GRCm39)	D232E	possibly damaging	Het
Rad51ap2	A	G	12: 11,507,986 (GRCm39)	H636R	probably benign	Het
Rb1	T	C	14: 73,526,165 (GRCm39)	T169A	probably benign	Het
Rcc2	T	C	4: 140,444,428 (GRCm39)	L373P	probably damaging	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Rrbp1	A	G	2: 143,796,118 (GRCm39)	L1200P	possibly damaging	Het
Sdk1	A	G	5: 141,778,699 (GRCm39)	N226D	probably damaging	Het
Selenbp1	G	A	3: 94,851,441 (GRCm39)	R398H	probably damaging	Het
Selenoo	A	G	15: 88,983,485 (GRCm39)	M509V	probably benign	Het
Slc2a5	T	G	4: 150,210,095 (GRCm39)	S27A	probably damaging	Het
Slc30a5	A	T	13: 100,940,457 (GRCm39)	H619Q	probably damaging	Het
Slc5a9	A	G	4: 111,750,420 (GRCm39)	I146T	possibly damaging	Het
Slc6a1	G	T	6: 114,284,731 (GRCm39)	G263V	probably damaging	Het
Slmap	A	G	14: 26,139,402 (GRCm39)	Y771H	probably damaging	Het
Snx29	A	G	16: 11,218,707 (GRCm39)	D181G	possibly damaging	Het
Spata31d1c	G	A	13: 65,181,779 (GRCm39)		probably null	Het
Stat5a	C	A	11: 100,764,916 (GRCm39)	T213N	probably benign	Het
Stt3a	A	T	9: 36,659,292 (GRCm39)	V349D	probably damaging	Het
Tcf20	A	T	15: 82,739,803 (GRCm39)	D549E	probably damaging	Het
Thbs2	T	A	17: 14,893,471 (GRCm39)	D903V	probably damaging	Het
Tln2	T	C	9: 67,209,842 (GRCm39)	T432A	probably damaging	Het
Tmc1	A	T	19: 20,834,039 (GRCm39)	N241K	probably benign	Het
Tmem260	G	T	14: 48,715,066 (GRCm39)	R240L	possibly damaging	Het
Tnfaip6	A	T	2: 51,933,742 (GRCm39)	E32D	probably damaging	Het
Trpa1	A	T	1: 14,969,625 (GRCm39)	H381Q	probably damaging	Het
Tsen2	T	C	6: 115,524,936 (GRCm39)	I45T	possibly damaging	Het
Ttc6	G	A	12: 57,752,338 (GRCm39)	V1415I	probably damaging	Het
Ttll7	G	T	3: 146,635,944 (GRCm39)	R426L	probably damaging	Het
Ttn	A	C	2: 76,570,482 (GRCm39)	S26804A	probably damaging	Het
Ubqlnl	A	T	7: 103,797,890 (GRCm39)	C536S	probably benign	Het
Vmn2r73	A	G	7: 85,506,936 (GRCm39)	V792A	probably benign	Het
Zfp345	T	C	2: 150,314,578 (GRCm39)	T320A	probably benign	Het
Zfp407	T	C	18: 84,227,774 (GRCm39)	D1945G	possibly damaging	Het

Other mutations in Sidt2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00325:Sidt2	APN	9	45,853,534 (GRCm39)	missense	possibly damaging	0.84
IGL00586:Sidt2	APN	9	45,854,350 (GRCm39)	missense	possibly damaging	0.78
IGL00786:Sidt2	APN	9	45,861,101 (GRCm39)	missense	possibly damaging	0.69
IGL01069:Sidt2	APN	9	45,854,375 (GRCm39)	missense	possibly damaging	0.73
IGL01160:Sidt2	APN	9	45,854,024 (GRCm39)	missense	probably damaging	1.00
IGL01474:Sidt2	APN	9	45,858,280 (GRCm39)	critical splice donor site	probably null
IGL02068:Sidt2	APN	9	45,856,962 (GRCm39)	critical splice donor site	probably null
IGL02171:Sidt2	APN	9	45,864,068 (GRCm39)	missense	possibly damaging	0.81
IGL02312:Sidt2	APN	9	45,858,299 (GRCm39)	missense	probably benign	0.27
IGL02344:Sidt2	APN	9	45,856,590 (GRCm39)	missense	probably null	1.00
IGL03030:Sidt2	APN	9	45,850,803 (GRCm39)	missense	probably damaging	1.00
IGL03062:Sidt2	APN	9	45,853,981 (GRCm39)	critical splice donor site	probably null
R0157:Sidt2	UTSW	9	45,850,565 (GRCm39)	missense	probably damaging	1.00
R0330:Sidt2	UTSW	9	45,866,200 (GRCm39)	missense	probably benign	0.09
R0549:Sidt2	UTSW	9	45,864,417 (GRCm39)	splice site	probably null
R0714:Sidt2	UTSW	9	45,858,358 (GRCm39)	splice site	probably benign
R1241:Sidt2	UTSW	9	45,857,002 (GRCm39)	missense	probably damaging	0.97
R1511:Sidt2	UTSW	9	45,861,387 (GRCm39)	missense	probably damaging	1.00
R1558:Sidt2	UTSW	9	45,863,098 (GRCm39)	missense	probably damaging	1.00
R1677:Sidt2	UTSW	9	45,864,517 (GRCm39)	missense	probably benign	0.01
R2153:Sidt2	UTSW	9	45,856,638 (GRCm39)	missense	probably damaging	1.00
R2154:Sidt2	UTSW	9	45,856,638 (GRCm39)	missense	probably damaging	1.00
R4210:Sidt2	UTSW	9	45,854,073 (GRCm39)	missense	probably benign	0.00
R4349:Sidt2	UTSW	9	45,857,011 (GRCm39)	missense	possibly damaging	0.94
R4855:Sidt2	UTSW	9	45,863,327 (GRCm39)	missense	probably benign
R5069:Sidt2	UTSW	9	45,850,759 (GRCm39)	splice site	probably null
R5175:Sidt2	UTSW	9	45,863,086 (GRCm39)	missense	probably damaging	1.00
R5276:Sidt2	UTSW	9	45,866,075 (GRCm39)	missense	probably damaging	0.97
R5544:Sidt2	UTSW	9	45,855,753 (GRCm39)	missense	probably damaging	1.00
R5805:Sidt2	UTSW	9	45,853,497 (GRCm39)	missense	probably damaging	0.97
R5927:Sidt2	UTSW	9	45,855,752 (GRCm39)	missense	probably damaging	1.00
R6954:Sidt2	UTSW	9	45,864,148 (GRCm39)	missense	probably benign	0.01
R7060:Sidt2	UTSW	9	45,864,544 (GRCm39)	missense	possibly damaging	0.91
R7117:Sidt2	UTSW	9	45,864,517 (GRCm39)	missense	probably benign	0.01
R7207:Sidt2	UTSW	9	45,856,449 (GRCm39)	missense	probably damaging	1.00
R7317:Sidt2	UTSW	9	45,854,988 (GRCm39)	nonsense	probably null
R7765:Sidt2	UTSW	9	45,852,873 (GRCm39)	splice site	probably null
R8098:Sidt2	UTSW	9	45,857,028 (GRCm39)	missense	probably benign	0.05
R9039:Sidt2	UTSW	9	45,856,648 (GRCm39)	missense	probably benign	0.05
R9157:Sidt2	UTSW	9	45,852,658 (GRCm39)	missense	possibly damaging	0.58
R9160:Sidt2	UTSW	9	45,858,280 (GRCm39)	critical splice donor site	probably null
R9261:Sidt2	UTSW	9	45,861,396 (GRCm39)	missense	probably damaging	0.99
R9313:Sidt2	UTSW	9	45,852,658 (GRCm39)	missense	possibly damaging	0.58
R9641:Sidt2	UTSW	9	45,864,495 (GRCm39)	missense	probably benign	0.00
R9792:Sidt2	UTSW	9	45,850,563 (GRCm39)	missense	probably damaging	0.97
R9793:Sidt2	UTSW	9	45,850,563 (GRCm39)	missense	probably damaging	0.97
R9803:Sidt2	UTSW	9	45,854,912 (GRCm39)	missense	probably damaging	1.00
X0026:Sidt2	UTSW	9	45,850,597 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGCAGAGTTACAGACCAAGACC -3'
(R):5'- TGGCGAATCACTGTGCTGTG -3'

Sequencing Primer
(F):5'- GTGATCACCAGCTGCACC -3'
(R):5'- GACCGACTCCAGGAGAAGTC -3'

Posted On

2014-10-01