Mutagenetix > Incidental Mutation

Incidental Mutation 'R2154:Phf2'

234649

Institutional Source

Beutler Lab

Gene Symbol

Phf2

Ensembl Gene

ENSMUSG00000038025

Gene Name

PHD finger protein 2

Synonyms

MMRRC Submission

040157-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.294) question?

Stock #

R2154 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

48955226-49024361 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 48973549 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 372 (Y372C)

Ref Sequence

ENSEMBL: ENSMUSP00000047308 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035540]

AlphaFold

Q9WTU0

Predicted Effect

unknown
Transcript: ENSMUST00000035540
AA Change: Y372C

SMART Domains

Protein: ENSMUSP00000047308
Gene: ENSMUSG00000038025
AA Change: Y372C

Domain	Start	End	E-Value	Type
PHD	7	54	1.08e-9	SMART
JmjC	197	353	1.98e-47	SMART
low complexity region	468	481	N/A	INTRINSIC
low complexity region	487	532	N/A	INTRINSIC
low complexity region	884	891	N/A	INTRINSIC
coiled coil region	924	948	N/A	INTRINSIC
low complexity region	953	1021	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which contains a zinc finger-like PHD (plant homeodomain) finger, distinct from other classes of zinc finger motifs, and a hydrophobic and highly conserved domain. The PHD finger shows the typical Cys4-His-Cys3 arrangement. PHD finger genes are thought to belong to a diverse group of transcriptional regulators possibly affecting eukaryotic gene expression by influencing chromatin structure. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit partial postnatal lethality, decreased body weight, decreased adipocity and impaired adipogenesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030K09Rik	A	G	8: 73,208,959 (GRCm39)	E363G	probably benign	Het
Abca3	A	G	17: 24,596,693 (GRCm39)	Y382C	probably damaging	Het
Abca5	A	G	11: 110,183,000 (GRCm39)	I1019T	probably benign	Het
Acox3	A	T	5: 35,762,568 (GRCm39)	S481C	probably damaging	Het
Ankrd7	T	A	6: 18,870,030 (GRCm39)	M261K	probably benign	Het
Aqr	A	C	2: 113,967,485 (GRCm39)	M510R	probably damaging	Het
Arpc1a	A	T	5: 145,029,369 (GRCm39)	T56S	probably benign	Het
Asap2	A	T	12: 21,162,084 (GRCm39)	T14S	probably damaging	Het
Aspg	A	G	12: 112,087,408 (GRCm39)	E288G	probably benign	Het
Atp2c2	A	G	8: 120,482,841 (GRCm39)	N901S	probably benign	Het
Cabcoco1	A	G	10: 68,267,092 (GRCm39)	L205P	probably damaging	Het
Cant1	A	G	11: 118,302,263 (GRCm39)	L18P	probably damaging	Het
Cdca2	G	A	14: 67,914,425 (GRCm39)	P945S	probably damaging	Het
Cfap74	A	G	4: 155,513,753 (GRCm39)	K522E	possibly damaging	Het
Chek1	C	A	9: 36,635,279 (GRCm39)	V35F	probably damaging	Het
Cpa6	A	T	1: 10,407,547 (GRCm39)	M330K	probably damaging	Het
Creb3l4	G	T	3: 90,145,792 (GRCm39)	N246K	probably damaging	Het
Cyp2c55	T	A	19: 39,022,819 (GRCm39)	V319D	probably damaging	Het
Dapk1	T	A	13: 60,877,317 (GRCm39)	S519T	probably benign	Het
Dhx38	T	C	8: 110,287,306 (GRCm39)	S221G	probably benign	Het
Dis3l	T	A	9: 64,214,545 (GRCm39)	N981I	probably benign	Het
Dock4	T	A	12: 40,870,661 (GRCm39)	V1467E	probably damaging	Het
Dock4	ACCTGCTCTGCC	ACCTGCTCTGCCTGCTCTGCC	12: 40,894,547 (GRCm39)		probably benign	Het
Dok5	G	A	2: 170,642,816 (GRCm39)	G38D	probably damaging	Het
Ercc6l2	T	C	13: 64,013,821 (GRCm39)	S631P	probably damaging	Het
Fat4	A	T	3: 38,941,688 (GRCm39)	S194C	probably damaging	Het
Fcsk	T	A	8: 111,615,704 (GRCm39)	T542S	probably benign	Het
Garem2	T	C	5: 30,313,297 (GRCm39)	S54P	probably damaging	Het
Gdf10	T	C	14: 33,656,346 (GRCm39)	I436T	probably damaging	Het
Gfod1	T	C	13: 43,456,946 (GRCm39)	T10A	possibly damaging	Het
Gucy1a1	A	G	3: 82,018,458 (GRCm39)		probably null	Het
Heatr5b	G	T	17: 79,138,873 (GRCm39)	Q90K	probably benign	Het
Ikzf3	T	A	11: 98,376,475 (GRCm39)	K211*	probably null	Het
Itgam	A	C	7: 127,684,749 (GRCm39)	D373A	probably damaging	Het
Itpripl2	A	G	7: 118,089,107 (GRCm39)	F484S	probably damaging	Het
Kat6b	A	T	14: 21,718,735 (GRCm39)	H1138L	probably benign	Het
Kif16b	T	C	2: 142,532,500 (GRCm39)	K1213R	probably damaging	Het
Klra3	G	C	6: 130,310,107 (GRCm39)	R138G	probably benign	Het
Mmp25	T	A	17: 23,850,048 (GRCm39)	Y504F	probably damaging	Het
Mtf2	A	G	5: 108,228,797 (GRCm39)	K38E	possibly damaging	Het
Myh14	A	C	7: 44,301,853 (GRCm39)		probably null	Het
Nedd4l	T	A	18: 65,343,401 (GRCm39)	H820Q	probably damaging	Het
Nfkb1	T	C	3: 135,307,240 (GRCm39)	T562A	probably benign	Het
Or8b49	G	T	9: 38,505,707 (GRCm39)	L63F	probably damaging	Het
Pds5a	A	T	5: 65,807,841 (GRCm39)	V464E	probably damaging	Het
Peak1	C	T	9: 56,114,496 (GRCm39)	V452M	probably damaging	Het
Poc1a	T	A	9: 106,162,773 (GRCm39)		probably null	Het
Prss33	C	T	17: 24,053,817 (GRCm39)	V87M	probably damaging	Het
Psmc2	C	G	5: 22,008,127 (GRCm39)	L344V	possibly damaging	Het
Ptpn12	C	A	5: 21,207,466 (GRCm39)	Q297H	probably damaging	Het
Rabgap1	T	C	2: 37,365,453 (GRCm39)	V242A	probably damaging	Het
Rad1	C	A	15: 10,486,721 (GRCm39)	H39Q	possibly damaging	Het
Rad51ap2	A	G	12: 11,507,986 (GRCm39)	H636R	probably benign	Het
Samd9l	C	T	6: 3,372,945 (GRCm39)	D1439N	possibly damaging	Het
Sbno1	A	T	5: 124,516,574 (GRCm39)	D1266E	probably benign	Het
Sidt2	T	C	9: 45,856,638 (GRCm39)	D477G	probably damaging	Het
Slc22a13	T	C	9: 119,037,753 (GRCm39)	K125R	probably benign	Het
Slc6a1	G	T	6: 114,284,731 (GRCm39)	G263V	probably damaging	Het
Slmap	A	G	14: 26,139,402 (GRCm39)	Y771H	probably damaging	Het
Smg1	A	T	7: 117,757,299 (GRCm39)		probably benign	Het
Spinkl	A	T	18: 44,302,194 (GRCm39)	N32K	probably benign	Het
Stxbp1	T	A	2: 32,692,868 (GRCm39)	I383F	probably damaging	Het
Taf3	C	T	2: 9,956,377 (GRCm39)	E597K	possibly damaging	Het
Tln2	T	C	9: 67,209,842 (GRCm39)	T432A	probably damaging	Het
Tmco6	T	C	18: 36,874,740 (GRCm39)	V409A	probably benign	Het
Tstd2	T	C	4: 46,129,235 (GRCm39)	T198A	probably damaging	Het
Vmn1r230	T	A	17: 21,067,063 (GRCm39)	M84K	probably damaging	Het
Vmn1r45	T	A	6: 89,910,965 (GRCm39)	S2C	possibly damaging	Het
Vmn2r25	T	A	6: 123,816,805 (GRCm39)	T259S	probably benign	Het
Vmn2r70	A	G	7: 85,212,923 (GRCm39)	S495P	possibly damaging	Het
Vmn2r97	A	T	17: 19,167,584 (GRCm39)	R613*	probably null	Het
Yme1l1	T	C	2: 23,052,520 (GRCm39)	L58P	probably damaging	Het
Zan	G	A	5: 137,412,511 (GRCm39)		probably benign	Het
Zfhx4	A	G	3: 5,466,801 (GRCm39)	T2320A	possibly damaging	Het
Zfp407	T	C	18: 84,227,774 (GRCm39)	D1945G	possibly damaging	Het

Other mutations in Phf2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01146:Phf2	APN	13	48,973,083 (GRCm39)	missense	unknown
IGL01554:Phf2	APN	13	48,959,355 (GRCm39)	nonsense	probably null
IGL02063:Phf2	APN	13	48,975,118 (GRCm39)	missense	unknown
IGL02456:Phf2	APN	13	48,982,322 (GRCm39)	missense	unknown
IGL02498:Phf2	APN	13	48,958,715 (GRCm39)	missense	unknown
IGL02586:Phf2	APN	13	48,967,334 (GRCm39)	splice site	probably benign
IGL02688:Phf2	APN	13	48,959,315 (GRCm39)	missense	unknown
H8441:Phf2	UTSW	13	48,957,841 (GRCm39)	missense	possibly damaging	0.67
R0265:Phf2	UTSW	13	48,982,270 (GRCm39)	missense	unknown
R0389:Phf2	UTSW	13	48,957,965 (GRCm39)	missense	unknown
R0535:Phf2	UTSW	13	48,967,423 (GRCm39)	missense	unknown
R1162:Phf2	UTSW	13	48,973,117 (GRCm39)	splice site	probably benign
R1342:Phf2	UTSW	13	48,957,953 (GRCm39)	missense	unknown
R1551:Phf2	UTSW	13	48,985,579 (GRCm39)	missense	unknown
R1551:Phf2	UTSW	13	48,957,079 (GRCm39)	missense	probably damaging	1.00
R1567:Phf2	UTSW	13	48,985,589 (GRCm39)	missense	unknown
R1698:Phf2	UTSW	13	48,961,106 (GRCm39)	missense	unknown
R1766:Phf2	UTSW	13	48,973,033 (GRCm39)	missense	unknown
R1785:Phf2	UTSW	13	48,971,043 (GRCm39)	missense	unknown
R1997:Phf2	UTSW	13	48,982,384 (GRCm39)	missense	unknown
R2034:Phf2	UTSW	13	48,971,206 (GRCm39)	missense	unknown
R2096:Phf2	UTSW	13	48,985,589 (GRCm39)	nonsense	probably null
R2147:Phf2	UTSW	13	48,958,165 (GRCm39)	missense	unknown
R2149:Phf2	UTSW	13	48,958,165 (GRCm39)	missense	unknown
R2296:Phf2	UTSW	13	48,988,754 (GRCm39)	missense	unknown
R4212:Phf2	UTSW	13	48,974,089 (GRCm39)	missense	unknown
R4749:Phf2	UTSW	13	48,975,185 (GRCm39)	splice site	probably null
R4770:Phf2	UTSW	13	48,957,079 (GRCm39)	missense	probably damaging	1.00
R4948:Phf2	UTSW	13	48,961,198 (GRCm39)	missense	unknown
R4989:Phf2	UTSW	13	48,961,320 (GRCm39)	missense	unknown
R5792:Phf2	UTSW	13	48,973,518 (GRCm39)	splice site	probably null
R5848:Phf2	UTSW	13	48,973,546 (GRCm39)	missense	unknown
R6092:Phf2	UTSW	13	48,969,533 (GRCm39)	missense	unknown
R6165:Phf2	UTSW	13	48,967,341 (GRCm39)	critical splice donor site	probably null
R6192:Phf2	UTSW	13	48,973,583 (GRCm39)	missense	unknown
R6237:Phf2	UTSW	13	48,957,131 (GRCm39)	nonsense	probably null
R6249:Phf2	UTSW	13	48,959,348 (GRCm39)	missense	unknown
R6489:Phf2	UTSW	13	48,979,658 (GRCm39)	missense	unknown
R7616:Phf2	UTSW	13	48,961,083 (GRCm39)	missense	unknown
R8058:Phf2	UTSW	13	48,976,558 (GRCm39)	missense	unknown
R8158:Phf2	UTSW	13	48,971,236 (GRCm39)	missense	probably benign	0.23
R8186:Phf2	UTSW	13	48,961,227 (GRCm39)	missense	unknown
R8218:Phf2	UTSW	13	48,958,104 (GRCm39)	missense	unknown
R8237:Phf2	UTSW	13	48,976,514 (GRCm39)	missense	unknown
R8431:Phf2	UTSW	13	48,975,078 (GRCm39)	missense	unknown
R8496:Phf2	UTSW	13	48,971,181 (GRCm39)	missense	unknown
R8774:Phf2	UTSW	13	48,971,878 (GRCm39)	splice site	probably benign
R8786:Phf2	UTSW	13	48,967,219 (GRCm39)	missense	unknown
R8792:Phf2	UTSW	13	48,970,981 (GRCm39)	critical splice donor site	probably benign
R9505:Phf2	UTSW	13	48,957,134 (GRCm39)	missense	probably damaging	1.00
R9632:Phf2	UTSW	13	48,971,292 (GRCm39)	missense	unknown
R9644:Phf2	UTSW	13	49,024,218 (GRCm39)	nonsense	probably null
R9704:Phf2	UTSW	13	48,959,374 (GRCm39)	missense	unknown
R9778:Phf2	UTSW	13	48,973,101 (GRCm39)	missense	unknown
V1024:Phf2	UTSW	13	48,957,841 (GRCm39)	missense	possibly damaging	0.67
X0027:Phf2	UTSW	13	48,985,594 (GRCm39)	missense	unknown
Z1176:Phf2	UTSW	13	48,961,183 (GRCm39)	missense	unknown
Z1177:Phf2	UTSW	13	48,958,069 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- GCCCTGTCTTAGTGGATCAG -3'
(R):5'- CACCCATGGTAGCTGTCACTTTG -3'

Sequencing Primer
(F):5'- TAGTGGATCAGAACTTATACCAACC -3'
(R):5'- ACTTTGGGTGACATCAAGCC -3'

Posted On

2014-10-01