Incidental Mutation 'R2157:Tnr'
ID 234879
Institutional Source Beutler Lab
Gene Symbol Tnr
Ensembl Gene ENSMUSG00000015829
Gene Name tenascin R
Synonyms J1-tenascin, restrictin, janusin, TN-R
MMRRC Submission 040160-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R2157 (G1)
Quality Score 225
Status Validated
Chromosome 1
Chromosomal Location 159351339-159759299 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 159685840 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 357 (I357T)
Ref Sequence ENSEMBL: ENSMUSP00000141553 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000111669] [ENSMUST00000192069]
AlphaFold Q8BYI9
Predicted Effect probably damaging
Transcript: ENSMUST00000111669
AA Change: I357T

PolyPhen 2 Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000107298
Gene: ENSMUSG00000015829
AA Change: I357T

DomainStartEndE-ValueType
EGF_like 203 231 3.87e1 SMART
EGF_like 234 262 3.16e1 SMART
EGF_like 265 293 2.8e1 SMART
EGF 296 324 2.43e1 SMART
FN3 326 404 4.77e-8 SMART
FN3 415 493 3.1e-7 SMART
FN3 504 583 2.01e-6 SMART
FN3 594 675 1.98e-5 SMART
FN3 686 763 3.29e-11 SMART
FN3 774 851 3.32e-7 SMART
FN3 864 942 3.73e-10 SMART
FN3 953 1031 2.28e-5 SMART
FN3 1041 1118 8.56e-10 SMART
FBG 1133 1343 2.69e-133 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000192069
AA Change: I357T

PolyPhen 2 Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000141553
Gene: ENSMUSG00000015829
AA Change: I357T

DomainStartEndE-ValueType
EGF_like 203 231 3.87e1 SMART
EGF_like 234 262 3.16e1 SMART
EGF_like 265 293 2.8e1 SMART
EGF 296 324 2.43e1 SMART
FN3 326 404 4.77e-8 SMART
FN3 415 493 3.1e-7 SMART
FN3 504 583 2.01e-6 SMART
FN3 594 675 1.98e-5 SMART
FN3 686 763 3.29e-11 SMART
FN3 774 851 3.32e-7 SMART
FN3 864 942 3.73e-10 SMART
FN3 953 1031 2.28e-5 SMART
FN3 1041 1118 8.56e-10 SMART
FBG 1133 1343 2.69e-133 SMART
Predicted Effect unknown
Transcript: ENSMUST00000192457
AA Change: I81T
Meta Mutation Damage Score 0.4185 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.7%
Validation Efficiency 100% (80/80)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the tenascin family of extracellular matrix glycoproteins. The encoded protein is restricted to the central nervous system. The protein may play a role in neurite outgrowth, neural cell adhesion and modulation of sodium channel function. It is a constituent of perineuronal nets. [provided by RefSeq, Aug 2013]
PHENOTYPE: In spite of having decreased conduction velocity in the optic nerve and ultrastrucural alterations within the hippocampus, homozygous null mice are viable, fertile, and display normal behavior. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 83 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310022B05Rik A T 8: 125,378,168 (GRCm39) probably benign Het
4930590J08Rik T A 6: 91,919,468 (GRCm39) M709K possibly damaging Het
4930590J08Rik A G 6: 91,894,679 (GRCm39) probably null Het
A930011G23Rik T G 5: 99,379,956 (GRCm39) I394L probably damaging Het
Abca13 A C 11: 9,527,170 (GRCm39) M4528L probably damaging Het
Abcb1b G A 5: 8,874,791 (GRCm39) A484T probably benign Het
Actn1 A T 12: 80,219,891 (GRCm39) M660K probably benign Het
Adgra3 G T 5: 50,159,283 (GRCm39) N322K possibly damaging Het
Ahnak A G 19: 8,978,048 (GRCm39) I56V possibly damaging Het
Amotl2 A G 9: 102,607,788 (GRCm39) probably benign Het
Apoa1 T C 9: 46,140,471 (GRCm39) V34A probably damaging Het
Arrdc1 G A 2: 24,816,987 (GRCm39) A113V probably damaging Het
As3mt A G 19: 46,696,231 (GRCm39) D13G probably benign Het
Cald1 A G 6: 34,662,976 (GRCm39) Q13R possibly damaging Het
Ccdc28a G A 10: 18,106,203 (GRCm39) T41I probably benign Het
Ccdc30 A T 4: 119,190,921 (GRCm39) probably benign Het
Cct2 T C 10: 116,898,714 (GRCm39) probably benign Het
Cdh12 T C 15: 21,583,873 (GRCm39) I571T possibly damaging Het
Cdh15 G A 8: 123,588,763 (GRCm39) R279Q probably damaging Het
Ckm T C 7: 19,155,279 (GRCm39) S372P probably benign Het
Comp C T 8: 70,832,220 (GRCm39) Q554* probably null Het
Csf2ra T C 19: 61,215,509 (GRCm39) T70A probably benign Het
Csmd3 T C 15: 47,559,183 (GRCm39) E2256G probably damaging Het
Dicer1 A T 12: 104,669,208 (GRCm39) V1158D probably benign Het
Dner A G 1: 84,361,659 (GRCm39) F650S possibly damaging Het
Dnm3 T C 1: 162,135,462 (GRCm39) N437S possibly damaging Het
Dpy19l2 T C 9: 24,592,076 (GRCm39) I176V probably benign Het
Dpy19l2 A T 9: 24,495,928 (GRCm39) C597S probably benign Het
Edf1 T C 2: 25,448,043 (GRCm39) probably null Het
Eif1ad16 A T 12: 87,985,481 (GRCm39) S21T unknown Het
Enpp3 A G 10: 24,652,776 (GRCm39) F727S probably damaging Het
Epb42 C T 2: 120,852,243 (GRCm39) M583I probably benign Het
Foxred1 A G 9: 35,116,659 (GRCm39) F117S probably damaging Het
Fstl5 T A 3: 76,615,372 (GRCm39) M811K possibly damaging Het
Gm5117 A T 8: 32,228,222 (GRCm39) noncoding transcript Het
Gpm6a T C 8: 55,511,833 (GRCm39) S236P probably damaging Het
Grik1 G A 16: 87,853,012 (GRCm39) A57V probably damaging Het
Hdgfl2 G A 17: 56,405,691 (GRCm39) V476I possibly damaging Het
Il17b G T 18: 61,823,439 (GRCm39) W91L probably damaging Het
Jph4 C A 14: 55,350,984 (GRCm39) R344L probably benign Het
Map3k21 A G 8: 126,664,005 (GRCm39) D522G probably benign Het
Mast2 A G 4: 116,179,480 (GRCm39) L398S probably damaging Het
Mbtd1 A G 11: 93,801,214 (GRCm39) T132A probably benign Het
Mbtps1 G T 8: 120,269,466 (GRCm39) T208K probably benign Het
Mr1 A G 1: 155,022,376 (GRCm39) probably null Het
Mthfsd G A 8: 121,828,240 (GRCm39) L140F probably damaging Het
Mybpc2 C G 7: 44,159,269 (GRCm39) D594H possibly damaging Het
Nalcn T C 14: 123,647,164 (GRCm39) M570V probably benign Het
Ncam2 T C 16: 81,287,277 (GRCm39) I397T probably damaging Het
Ndufs4 C T 13: 114,453,514 (GRCm39) V75I probably damaging Het
Nek4 T A 14: 30,701,925 (GRCm39) probably null Het
Nfatc1 G T 18: 80,679,060 (GRCm39) A762D possibly damaging Het
Nhsl3 C T 4: 129,117,917 (GRCm39) R249H possibly damaging Het
Npc1 A G 18: 12,324,866 (GRCm39) I1209T probably damaging Het
Or10k2 T C 8: 84,268,250 (GRCm39) I159T probably benign Het
Or4c11 A T 2: 88,695,213 (GRCm39) N88I probably benign Het
Pak5 T C 2: 135,942,877 (GRCm39) D421G probably damaging Het
Pias1 A G 9: 62,820,112 (GRCm39) V285A possibly damaging Het
Pigg T A 5: 108,466,755 (GRCm39) I212N probably damaging Het
Plcd3 A T 11: 102,961,974 (GRCm39) C711S probably benign Het
Plscr5 G A 9: 92,080,550 (GRCm39) R12K probably benign Het
Plxna4 T C 6: 32,493,909 (GRCm39) I236V probably benign Het
Ppp1r26 T C 2: 28,342,370 (GRCm39) F667L probably benign Het
Prkx A G X: 76,814,920 (GRCm39) F247L probably benign Het
Qpct G A 17: 79,378,115 (GRCm39) R95Q probably benign Het
Ralgapb G T 2: 158,279,392 (GRCm39) M159I probably benign Het
Rnf145 T C 11: 44,445,997 (GRCm39) L277P probably damaging Het
Scn9a A G 2: 66,366,669 (GRCm39) S705P probably damaging Het
Slc4a8 A G 15: 100,704,254 (GRCm39) T750A probably damaging Het
Slc66a1 A T 4: 139,029,166 (GRCm39) V106D probably damaging Het
Syne2 A G 12: 76,141,230 (GRCm39) E6114G probably damaging Het
Tat T C 8: 110,724,236 (GRCm39) M375T probably damaging Het
Tex10 C T 4: 48,436,522 (GRCm39) probably benign Het
Tmprss11e T C 5: 86,861,587 (GRCm39) K320E probably benign Het
Vmn1r229 A T 17: 21,035,638 (GRCm39) R294S possibly damaging Het
Vmn2r116 G A 17: 23,620,443 (GRCm39) D726N probably damaging Het
Vpreb1b T A 16: 17,798,934 (GRCm39) L140* probably null Het
Wfs1 G A 5: 37,125,286 (GRCm39) P535L probably damaging Het
Xdh A G 17: 74,229,532 (GRCm39) L307P probably damaging Het
Zfp160 A G 17: 21,241,090 (GRCm39) S53G probably benign Het
Zfp319 A G 8: 96,054,659 (GRCm39) C515R probably damaging Het
Zfp747 A G 7: 126,974,929 (GRCm39) F24L possibly damaging Het
Zzef1 A T 11: 72,739,460 (GRCm39) probably benign Het
Other mutations in Tnr
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00432:Tnr APN 1 159,688,815 (GRCm39) missense probably benign 0.00
IGL00905:Tnr APN 1 159,679,752 (GRCm39) missense probably benign 0.06
IGL01396:Tnr APN 1 159,724,594 (GRCm39) missense possibly damaging 0.91
IGL01550:Tnr APN 1 159,701,828 (GRCm39) missense probably benign
IGL01803:Tnr APN 1 159,695,813 (GRCm39) missense probably damaging 1.00
IGL01845:Tnr APN 1 159,695,576 (GRCm39) unclassified probably benign
IGL01983:Tnr APN 1 159,691,349 (GRCm39) missense probably benign 0.00
IGL01985:Tnr APN 1 159,746,607 (GRCm39) missense possibly damaging 0.70
IGL02210:Tnr APN 1 159,679,671 (GRCm39) missense probably benign 0.44
IGL02486:Tnr APN 1 159,679,664 (GRCm39) splice site probably null
IGL03210:Tnr APN 1 159,715,880 (GRCm39) missense probably benign 0.00
Assiduous UTSW 1 159,719,593 (GRCm39) missense probably benign
Grip UTSW 1 159,713,680 (GRCm39) missense possibly damaging 0.68
Persistent UTSW 1 159,679,856 (GRCm39) missense probably benign
Tenacious UTSW 1 159,701,770 (GRCm39) missense probably damaging 1.00
R0002:Tnr UTSW 1 159,701,770 (GRCm39) missense probably damaging 1.00
R0002:Tnr UTSW 1 159,701,770 (GRCm39) missense probably damaging 1.00
R0009:Tnr UTSW 1 159,679,986 (GRCm39) missense probably damaging 1.00
R0042:Tnr UTSW 1 159,714,595 (GRCm39) missense probably benign 0.01
R0594:Tnr UTSW 1 159,677,905 (GRCm39) missense probably benign
R0617:Tnr UTSW 1 159,695,673 (GRCm39) missense probably damaging 1.00
R0637:Tnr UTSW 1 159,677,905 (GRCm39) missense possibly damaging 0.60
R0682:Tnr UTSW 1 159,679,877 (GRCm39) nonsense probably null
R1171:Tnr UTSW 1 159,685,780 (GRCm39) missense probably damaging 0.97
R1185:Tnr UTSW 1 159,679,856 (GRCm39) missense probably benign
R1185:Tnr UTSW 1 159,679,856 (GRCm39) missense probably benign
R1185:Tnr UTSW 1 159,679,856 (GRCm39) missense probably benign
R1335:Tnr UTSW 1 159,695,600 (GRCm39) missense probably benign 0.18
R1540:Tnr UTSW 1 159,677,675 (GRCm39) missense probably damaging 0.99
R1697:Tnr UTSW 1 159,679,600 (GRCm39) missense probably benign 0.00
R1938:Tnr UTSW 1 159,722,607 (GRCm39) nonsense probably null
R1941:Tnr UTSW 1 159,677,704 (GRCm39) missense possibly damaging 0.92
R2021:Tnr UTSW 1 159,679,592 (GRCm39) missense probably benign
R2022:Tnr UTSW 1 159,679,592 (GRCm39) missense probably benign
R2051:Tnr UTSW 1 159,719,603 (GRCm39) missense probably benign
R2319:Tnr UTSW 1 159,677,618 (GRCm39) start codon destroyed probably null 1.00
R2936:Tnr UTSW 1 159,715,932 (GRCm39) missense probably damaging 0.96
R3015:Tnr UTSW 1 159,715,829 (GRCm39) missense probably benign 0.00
R3417:Tnr UTSW 1 159,722,612 (GRCm39) missense probably benign 0.00
R3739:Tnr UTSW 1 159,750,983 (GRCm39) missense possibly damaging 0.78
R3977:Tnr UTSW 1 159,719,593 (GRCm39) missense probably benign
R4232:Tnr UTSW 1 159,713,785 (GRCm39) missense possibly damaging 0.55
R4478:Tnr UTSW 1 159,712,326 (GRCm39) splice site probably null
R4774:Tnr UTSW 1 159,724,636 (GRCm39) missense probably damaging 1.00
R4829:Tnr UTSW 1 159,685,974 (GRCm39) missense probably benign 0.24
R4837:Tnr UTSW 1 159,512,358 (GRCm39) intron probably benign
R5111:Tnr UTSW 1 159,713,798 (GRCm39) missense probably benign 0.04
R5224:Tnr UTSW 1 159,750,885 (GRCm39) missense probably damaging 1.00
R5249:Tnr UTSW 1 159,512,226 (GRCm39) intron probably benign
R5730:Tnr UTSW 1 159,715,892 (GRCm39) missense probably benign 0.02
R5807:Tnr UTSW 1 159,714,500 (GRCm39) missense possibly damaging 0.95
R5832:Tnr UTSW 1 159,713,692 (GRCm39) missense probably benign 0.15
R5927:Tnr UTSW 1 159,740,336 (GRCm39) missense probably damaging 1.00
R6049:Tnr UTSW 1 159,740,324 (GRCm39) missense probably damaging 1.00
R6056:Tnr UTSW 1 159,714,479 (GRCm39) missense probably damaging 0.99
R6063:Tnr UTSW 1 159,740,254 (GRCm39) missense probably benign 0.00
R6141:Tnr UTSW 1 159,714,692 (GRCm39) missense probably benign
R6218:Tnr UTSW 1 159,715,884 (GRCm39) missense possibly damaging 0.94
R6275:Tnr UTSW 1 159,688,840 (GRCm39) missense probably damaging 0.99
R6543:Tnr UTSW 1 159,751,677 (GRCm39) missense probably damaging 1.00
R6626:Tnr UTSW 1 159,677,822 (GRCm39) missense probably damaging 1.00
R7378:Tnr UTSW 1 159,712,432 (GRCm39) critical splice donor site probably null
R7587:Tnr UTSW 1 159,713,778 (GRCm39) missense probably benign 0.27
R7766:Tnr UTSW 1 159,715,880 (GRCm39) missense probably benign 0.00
R8140:Tnr UTSW 1 159,691,265 (GRCm39) missense probably damaging 0.99
R8215:Tnr UTSW 1 159,715,860 (GRCm39) missense possibly damaging 0.91
R8248:Tnr UTSW 1 159,719,663 (GRCm39) missense probably damaging 0.98
R8374:Tnr UTSW 1 159,685,953 (GRCm39) missense probably benign 0.24
R8427:Tnr UTSW 1 159,713,801 (GRCm39) missense possibly damaging 0.67
R8465:Tnr UTSW 1 159,713,645 (GRCm39) missense probably benign 0.01
R8534:Tnr UTSW 1 159,746,585 (GRCm39) missense probably benign 0.18
R8753:Tnr UTSW 1 159,677,936 (GRCm39) missense probably benign 0.28
R8804:Tnr UTSW 1 159,685,882 (GRCm39) missense probably benign
R8857:Tnr UTSW 1 159,713,728 (GRCm39) missense probably benign 0.10
R8917:Tnr UTSW 1 159,701,692 (GRCm39) nonsense probably null
R8930:Tnr UTSW 1 159,740,359 (GRCm39) missense probably damaging 1.00
R8932:Tnr UTSW 1 159,740,359 (GRCm39) missense probably damaging 1.00
R8940:Tnr UTSW 1 159,685,867 (GRCm39) missense probably damaging 1.00
R9096:Tnr UTSW 1 159,677,804 (GRCm39) missense probably benign 0.10
R9127:Tnr UTSW 1 159,713,680 (GRCm39) missense possibly damaging 0.68
R9205:Tnr UTSW 1 159,722,617 (GRCm39) missense probably benign
R9311:Tnr UTSW 1 159,677,663 (GRCm39) missense probably benign 0.30
R9679:Tnr UTSW 1 159,719,608 (GRCm39) missense probably benign 0.08
X0011:Tnr UTSW 1 159,716,908 (GRCm39) missense probably benign 0.02
X0028:Tnr UTSW 1 159,701,684 (GRCm39) missense probably damaging 1.00
Z1088:Tnr UTSW 1 159,722,665 (GRCm39) missense probably benign 0.29
Z1177:Tnr UTSW 1 159,679,661 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GCAAGAAACTTGAGTCCGGG -3'
(R):5'- CACTACTTTCATGAATGCCCATG -3'

Sequencing Primer
(F):5'- GCTGGGAATGGCAATCCTCTG -3'
(R):5'- ATGGTACGTACGAGTGGCCAC -3'
Posted On 2014-10-01