Incidental Mutation 'R2161:Or52e19b'
| ID |
235153 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or52e19b
|
| Ensembl Gene |
ENSMUSG00000059874 |
| Gene Name |
olfactory receptor family 52 subfamily E member 19B |
| Synonyms |
MOR32-2, GA_x6K02T2PBJ9-6092550-6092362, GA_x6K02T2PBJ9-6096387-6095449, Olfr604, Olfr603, MOR32-14_i |
| MMRRC Submission |
040164-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.060)
|
| Stock # |
R2161 (G1)
|
| Quality Score |
184 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
103032269-103033207 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 103032407 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Serine
at position 267
(R267S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151321
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000071844]
[ENSMUST00000218246]
|
| AlphaFold |
L7N1Y4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000071844
AA Change: R267S
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
| SMART Domains |
Protein: ENSMUSP00000071744
Gene: ENSMUSG00000059874
AA Change: R267S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
33 |
311 |
1.7e-120 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
37 |
210 |
1.9e-10 |
PFAM |
|
Pfam:7tm_1
|
43 |
293 |
5.4e-16 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218246
AA Change: R267S
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.4%
- 20x: 95.4%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts12 |
A |
G |
15: 11,215,821 (GRCm39) |
M281V |
probably damaging |
Het |
| Ap1g1 |
A |
T |
8: 110,570,986 (GRCm39) |
D423V |
probably damaging |
Het |
| Arel1 |
A |
G |
12: 84,968,030 (GRCm39) |
|
probably null |
Het |
| Arhgap33 |
T |
C |
7: 30,228,075 (GRCm39) |
|
probably null |
Het |
| Arhgef18 |
T |
G |
8: 3,489,575 (GRCm39) |
Y302* |
probably null |
Het |
| Blm |
T |
C |
7: 80,131,118 (GRCm39) |
|
probably null |
Het |
| Cep295 |
T |
G |
9: 15,264,354 (GRCm39) |
E97D |
probably damaging |
Het |
| Cep295nl |
T |
C |
11: 118,223,335 (GRCm39) |
D503G |
possibly damaging |
Het |
| Chchd2 |
G |
T |
5: 129,912,989 (GRCm39) |
A29E |
probably damaging |
Het |
| Cic |
A |
G |
7: 24,987,559 (GRCm39) |
|
probably null |
Het |
| Cmtr1 |
C |
T |
17: 29,921,147 (GRCm39) |
L798F |
probably benign |
Het |
| Col11a2 |
C |
A |
17: 34,283,771 (GRCm39) |
|
probably benign |
Het |
| Crispld2 |
A |
G |
8: 120,742,078 (GRCm39) |
Y142C |
probably damaging |
Het |
| Csmd3 |
CCTTTGCGCTT |
CCTT |
15: 47,604,632 (GRCm39) |
|
probably null |
Het |
| Dsp |
G |
A |
13: 38,380,427 (GRCm39) |
D1792N |
probably damaging |
Het |
| Esp4 |
C |
A |
17: 40,913,284 (GRCm39) |
N50K |
probably benign |
Het |
| Fbxo21 |
T |
C |
5: 118,133,451 (GRCm39) |
S404P |
probably damaging |
Het |
| Ggnbp2 |
A |
G |
11: 84,725,259 (GRCm39) |
F639L |
probably benign |
Het |
| Golph3l |
G |
A |
3: 95,524,436 (GRCm39) |
G229D |
probably damaging |
Het |
| Hlx |
G |
T |
1: 184,459,838 (GRCm39) |
S433R |
probably benign |
Het |
| Kdm2b |
T |
A |
5: 123,018,762 (GRCm39) |
S233C |
probably damaging |
Het |
| Krt14 |
C |
T |
11: 100,097,939 (GRCm39) |
G115R |
unknown |
Het |
| Ldb3 |
A |
G |
14: 34,289,353 (GRCm39) |
|
probably null |
Het |
| Lrp1 |
T |
A |
10: 127,391,607 (GRCm39) |
E2937D |
probably damaging |
Het |
| Mark2 |
G |
C |
19: 7,260,112 (GRCm39) |
S111C |
probably damaging |
Het |
| Naa20 |
T |
A |
2: 145,753,715 (GRCm39) |
|
probably null |
Het |
| Ndufa8 |
A |
T |
2: 35,926,527 (GRCm39) |
W170R |
probably damaging |
Het |
| Nlrp2 |
A |
T |
7: 5,328,041 (GRCm39) |
L671I |
probably damaging |
Het |
| Or5b108 |
T |
A |
19: 13,168,673 (GRCm39) |
I214K |
probably damaging |
Het |
| Ptgir |
A |
G |
7: 16,640,794 (GRCm39) |
M29V |
possibly damaging |
Het |
| Ptpro |
A |
G |
6: 137,426,885 (GRCm39) |
D280G |
probably benign |
Het |
| Reps1 |
A |
G |
10: 17,972,031 (GRCm39) |
E361G |
probably damaging |
Het |
| Rgs6 |
A |
G |
12: 83,138,578 (GRCm39) |
E304G |
probably damaging |
Het |
| Siglece |
T |
C |
7: 43,308,793 (GRCm39) |
T187A |
probably benign |
Het |
| Slc5a10 |
C |
T |
11: 61,610,760 (GRCm39) |
G5R |
probably null |
Het |
| Sohlh1 |
A |
G |
2: 25,734,648 (GRCm39) |
I215T |
probably benign |
Het |
| Stag1 |
T |
A |
9: 100,771,648 (GRCm39) |
V691D |
probably damaging |
Het |
| Tectb |
C |
G |
19: 55,169,431 (GRCm39) |
|
probably benign |
Het |
| Tmed8 |
A |
G |
12: 87,221,031 (GRCm39) |
V185A |
probably damaging |
Het |
| Trim71 |
A |
G |
9: 114,341,840 (GRCm39) |
F814S |
probably damaging |
Het |
| Trmt9b |
T |
C |
8: 36,972,804 (GRCm39) |
C85R |
probably damaging |
Het |
| Tsnax |
A |
T |
8: 125,742,428 (GRCm39) |
K52N |
probably damaging |
Het |
| Tubgcp3 |
T |
C |
8: 12,682,292 (GRCm39) |
T676A |
probably benign |
Het |
|
| Other mutations in Or52e19b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00820:Or52e19b
|
APN |
7 |
103,032,672 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL01582:Or52e19b
|
APN |
7 |
103,032,806 (GRCm39) |
nonsense |
probably null |
|
|
IGL01788:Or52e19b
|
APN |
7 |
103,032,770 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02837:Or52e19b
|
UTSW |
7 |
103,032,822 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1807:Or52e19b
|
UTSW |
7 |
103,032,790 (GRCm39) |
missense |
probably benign |
0.25 |
|
R2097:Or52e19b
|
UTSW |
7 |
103,032,840 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4870:Or52e19b
|
UTSW |
7 |
103,032,840 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5116:Or52e19b
|
UTSW |
7 |
103,033,071 (GRCm39) |
missense |
probably benign |
0.03 |
|
R6263:Or52e19b
|
UTSW |
7 |
103,032,403 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R6385:Or52e19b
|
UTSW |
7 |
103,033,104 (GRCm39) |
missense |
possibly damaging |
0.61 |
|
R6980:Or52e19b
|
UTSW |
7 |
103,032,303 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7474:Or52e19b
|
UTSW |
7 |
103,032,969 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7754:Or52e19b
|
UTSW |
7 |
103,032,945 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7842:Or52e19b
|
UTSW |
7 |
103,032,783 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7947:Or52e19b
|
UTSW |
7 |
103,032,735 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R7980:Or52e19b
|
UTSW |
7 |
103,032,970 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8176:Or52e19b
|
UTSW |
7 |
103,033,071 (GRCm39) |
missense |
probably benign |
0.03 |
|
R8523:Or52e19b
|
UTSW |
7 |
103,032,413 (GRCm39) |
missense |
probably benign |
0.31 |
|
R8817:Or52e19b
|
UTSW |
7 |
103,032,825 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8845:Or52e19b
|
UTSW |
7 |
103,032,357 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8968:Or52e19b
|
UTSW |
7 |
103,032,667 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9398:Or52e19b
|
UTSW |
7 |
103,032,487 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9770:Or52e19b
|
UTSW |
7 |
103,032,613 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Z1177:Or52e19b
|
UTSW |
7 |
103,033,009 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- CTAAAGAGCAGCCTGACAGC -3'
(R):5'- GCCTGTGCTAACATAAGGATAAAC -3'
Sequencing Primer
(F):5'- GCAGCCTGACAGCATTTATG -3'
(R):5'- ATGGCTTATTCACCATTGCTGC -3'
|
| Posted On |
2014-10-01 |
Incidental Mutation