Mutagenetix > Incidental Mutation

Incidental Mutation 'R2163:Syt15'

235305

Institutional Source

Beutler Lab

Gene Symbol

Syt15

Ensembl Gene

ENSMUSG00000041479

Gene Name

synaptotagmin XV

Synonyms

E230025K04Rik, CHR10SYT, sytXV

MMRRC Submission

040166-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.056) question?

Stock #

R2163 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

34219595-34230420 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 34226116 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 306 (E306G)

Ref Sequence

ENSEMBL: ENSMUSP00000113725 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035351] [ENSMUST00000119693]

AlphaFold

Q8C6N3

Predicted Effect

probably benign
Transcript: ENSMUST00000035351
AA Change: E306G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000036755
Gene: ENSMUSG00000041479
AA Change: E306G

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
C2	160	262	2.44e-10	SMART
C2	291	397	6.01e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000119693
AA Change: E306G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000113725
Gene: ENSMUSG00000041479
AA Change: E306G

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
C2	160	262	2.44e-10	SMART
C2	291	389	7.53e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147298

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227403

Meta Mutation Damage Score

0.1472

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.6%
20x: 95.9%

Validation Efficiency

97% (76/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Synaptotagmin (Syt) family of membrane trafficking proteins. Members of this family contain a transmembrane region and a C-terminal-type tandem C2 domain. Unlike related family members, the encoded protein may be involved in membrane trafficking in non-neuronal tissues. Two trancript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610010F05Rik	T	C	11: 23,576,826		probably benign	Het
2410089E03Rik	T	A	15: 8,203,251		probably null	Het
4930578I07Rik	C	A	14: 66,938,548	T64K	unknown	Het
Ablim2	T	C	5: 35,802,353		probably benign	Het
Acp4	T	C	7: 44,255,976	D107G	probably damaging	Het
Adamts2	T	A	11: 50,788,805	C871S	probably benign	Het
Adamts3	A	G	5: 89,708,718	V332A	probably damaging	Het
Alkal1	C	T	1: 6,389,512	T104M	probably benign	Het
Astn1	A	G	1: 158,502,150	S192G	probably damaging	Het
Axdnd1	A	C	1: 156,392,003	V337G	probably damaging	Het
Baiap2l2	T	C	15: 79,259,195	D481G	possibly damaging	Het
Cacna2d1	C	T	5: 16,362,319	T964I	probably damaging	Het
Carf	T	C	1: 60,147,486		probably benign	Het
Catsper2	T	C	2: 121,400,175	D295G	probably damaging	Het
Cdh1	A	G	8: 106,649,081	T84A	probably benign	Het
Chd8	T	A	14: 52,198,818	H2508L	possibly damaging	Het
Chl1	A	T	6: 103,711,231	T284S	probably damaging	Het
Chtop	A	T	3: 90,502,211	M125K	probably benign	Het
Col14a1	T	A	15: 55,444,645		probably benign	Het
Cyp2b10	A	T	7: 25,925,385		probably benign	Het
Cyp2c70	G	A	19: 40,160,719	H328Y	possibly damaging	Het
Dcbld1	A	G	10: 52,286,356	T77A	probably damaging	Het
Dnah6	A	T	6: 73,089,746		probably null	Het
Efhd1	A	T	1: 87,289,473	D104V	probably damaging	Het
Eif5b	A	T	1: 38,048,794	D957V	probably benign	Het
Eps15	T	A	4: 109,370,669	S549R	probably damaging	Het
Fbxo3	C	A	2: 104,054,985	H400N	probably benign	Het
Fcer1a	A	G	1: 173,222,697	V86A	probably damaging	Het
Fh1	A	G	1: 175,614,840	M148T	possibly damaging	Het
Foxc1	C	A	13: 31,808,603	H466N	unknown	Het
Gadl1	T	A	9: 115,949,558	I180N	possibly damaging	Het
Gm10801	G	C	2: 98,664,007	R143T	possibly damaging	Het
Gm21718	T	C	14: 51,317,766		noncoding transcript	Het
Gm6614	G	A	6: 141,980,938	T554I	possibly damaging	Het
Hivep2	T	A	10: 14,128,226	Y189*	probably null	Het
Hoxd13	T	A	2: 74,669,069	S254T	possibly damaging	Het
Hspd1	A	G	1: 55,078,538		probably benign	Het
Il1r1	A	G	1: 40,294,863	M198V	probably benign	Het
Katnal1	T	A	5: 148,888,936	I362F	probably damaging	Het
Muc2	CGTG	CGTGTG	7: 141,699,185		probably null	Het
Mybpc1	T	C	10: 88,540,942		probably benign	Het
Mycbp2	A	G	14: 103,169,855		probably null	Het
Nell2	G	T	15: 95,429,978	N301K	probably damaging	Het
Nenf	T	A	1: 191,309,935	D108V	probably damaging	Het
Nfkbiz	T	C	16: 55,818,218	N293S	probably benign	Het
Nipbl	T	C	15: 8,336,919	K1229E	probably damaging	Het
Nlrp4a	T	C	7: 26,453,397	F631L	probably benign	Het
Nrp1	T	A	8: 128,497,871	V705E	probably damaging	Het
Nsf	G	C	11: 103,863,333	A459G	possibly damaging	Het
Olfr1128	A	G	2: 87,544,894	S217P	probably damaging	Het
Olfr366	A	G	2: 37,220,077	E196G	probably damaging	Het
Pdia4	C	T	6: 47,798,407	D490N	possibly damaging	Het
Pinlyp	T	A	7: 24,541,801	Y192F	probably benign	Het
Pkd2	T	C	5: 104,455,677		probably benign	Het
Ppara	A	G	15: 85,801,046	K399E	probably benign	Het
Ppp4r2	C	A	6: 100,865,086	N169K	probably damaging	Het
Prom1	T	A	5: 44,014,163	E632V	possibly damaging	Het
Rpap3	T	A	15: 97,680,348	Y562F	possibly damaging	Het
Rsph14	T	A	10: 74,957,779	K263N	probably damaging	Het
Scn11a	T	G	9: 119,755,025	D1508A	probably damaging	Het
Scn7a	T	C	2: 66,675,956	T1530A	probably damaging	Het
Sec14l1	T	A	11: 117,143,282		probably null	Het
Slc4a4	A	G	5: 89,214,576	I840V	probably damaging	Het
Slco1c1	T	A	6: 141,559,752	V419D	probably benign	Het
Sltm	T	A	9: 70,591,682	F1013I	probably damaging	Het
Spam1	A	G	6: 24,796,847	K266E	probably benign	Het
Tap1	A	T	17: 34,189,473		probably null	Het
Tbc1d16	G	C	11: 119,155,078		probably benign	Het
Tex47	T	C	5: 7,305,022	Y68H	probably damaging	Het
Ttn	A	T	2: 76,811,243	L5176Q	possibly damaging	Het
Ttn	T	C	2: 76,812,501	T13264A	probably damaging	Het
Ubxn2a	A	T	12: 4,885,757	F131Y	probably damaging	Het
Usp40	T	C	1: 87,995,858		probably benign	Het
Vmn1r170	T	C	7: 23,607,037	L288P	probably damaging	Het
Vmn1r175	A	G	7: 23,808,927	Y92H	probably benign	Het
Wdpcp	G	T	11: 21,885,015	E673*	probably null	Het
Zfr	T	A	15: 12,162,223	L820I	probably damaging	Het

Other mutations in Syt15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01069:Syt15	APN	14	34224924	missense	possibly damaging	0.91
IGL02486:Syt15	APN	14	34222976	missense	probably damaging	0.96
IGL02559:Syt15	APN	14	34221803	missense	probably benign
IGL02807:Syt15	APN	14	34222913	missense	probably benign
R1403:Syt15	UTSW	14	34221202	splice site	probably benign
R1695:Syt15	UTSW	14	34222901	missense	probably benign	0.37
R1993:Syt15	UTSW	14	34223012	missense	probably benign	0.06
R2214:Syt15	UTSW	14	34223032	missense	probably damaging	1.00
R3120:Syt15	UTSW	14	34222993	missense	probably benign	0.19
R3978:Syt15	UTSW	14	34223104	missense	probably benign	0.00
R4688:Syt15	UTSW	14	34228054	missense	probably damaging	1.00
R5214:Syt15	UTSW	14	34221746	missense	possibly damaging	0.89
R6715:Syt15	UTSW	14	34222862	missense	probably damaging	1.00
R7731:Syt15	UTSW	14	34223067	missense	possibly damaging	0.94
R8901:Syt15	UTSW	14	34226071	missense	probably damaging	1.00
R9466:Syt15	UTSW	14	34221034	missense	probably damaging	1.00
X0026:Syt15	UTSW	14	34225049	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TATCTTGGGGAGGGGACTAAAGTC -3'
(R):5'- ACCAAAGGTATCCGCAGAGG -3'

Sequencing Primer
(F):5'- CCATATGAAAGTCTGGCATGCAGTC -3'
(R):5'- TCCGCAGAGGGAGGACAG -3'

Posted On

2014-10-01