Incidental Mutation 'R2164:Tut4'
| ID |
235336 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Tut4
|
| Ensembl Gene |
ENSMUSG00000034610 |
| Gene Name |
terminal uridylyl transferase 4 |
| Synonyms |
9230115F04Rik, Tent3a, 6030404K05Rik, Zcchc11 |
| MMRRC Submission |
040167-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R2164 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
4 |
| Chromosomal Location |
108459426-108559421 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 108503029 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Glutamine
at position 481
(R481Q)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000095538
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000043368]
[ENSMUST00000097925]
[ENSMUST00000155068]
|
| AlphaFold |
B2RX14 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000043368
AA Change: R481Q
PolyPhen 2
Score 0.729 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000044836
Gene: ENSMUSG00000034610
AA Change: R481Q
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
260 |
275 |
N/A |
INTRINSIC |
|
SCOP:d1f5aa2
|
363 |
569 |
2e-23 |
SMART |
|
Pfam:PAP_assoc
|
648 |
701 |
1.2e-13 |
PFAM |
|
low complexity region
|
743 |
758 |
N/A |
INTRINSIC |
|
low complexity region
|
815 |
828 |
N/A |
INTRINSIC |
|
ZnF_C2HC
|
931 |
947 |
7.79e-3 |
SMART |
|
Pfam:NTP_transf_2
|
995 |
1085 |
4.2e-10 |
PFAM |
|
Pfam:PAP_assoc
|
1201 |
1254 |
4.7e-19 |
PFAM |
|
ZnF_C2HC
|
1311 |
1327 |
3.83e-3 |
SMART |
|
ZnF_C2HC
|
1359 |
1375 |
3.44e-4 |
SMART |
|
low complexity region
|
1398 |
1412 |
N/A |
INTRINSIC |
|
low complexity region
|
1418 |
1473 |
N/A |
INTRINSIC |
|
low complexity region
|
1628 |
1639 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000083365
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000097925
AA Change: R481Q
PolyPhen 2
Score 0.729 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000095538
Gene: ENSMUSG00000034610
AA Change: R481Q
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
260 |
275 |
N/A |
INTRINSIC |
|
SCOP:d1f5aa2
|
363 |
569 |
2e-23 |
SMART |
|
Pfam:PAP_assoc
|
648 |
701 |
8e-14 |
PFAM |
|
low complexity region
|
743 |
758 |
N/A |
INTRINSIC |
|
low complexity region
|
815 |
828 |
N/A |
INTRINSIC |
|
ZnF_C2HC
|
931 |
947 |
7.79e-3 |
SMART |
|
Pfam:NTP_transf_2
|
994 |
1082 |
6.3e-11 |
PFAM |
|
Pfam:PAP_assoc
|
1201 |
1254 |
5.2e-19 |
PFAM |
|
ZnF_C2HC
|
1311 |
1327 |
3.83e-3 |
SMART |
|
ZnF_C2HC
|
1364 |
1380 |
3.44e-4 |
SMART |
|
low complexity region
|
1403 |
1417 |
N/A |
INTRINSIC |
|
low complexity region
|
1423 |
1478 |
N/A |
INTRINSIC |
|
low complexity region
|
1632 |
1643 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000155068
AA Change: R442Q
PolyPhen 2
Score 0.141 (Sensitivity: 0.92; Specificity: 0.86)
|
| SMART Domains |
Protein: ENSMUSP00000120172
Gene: ENSMUSG00000034610
AA Change: R442Q
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
221 |
236 |
N/A |
INTRINSIC |
|
SCOP:d1f5aa2
|
324 |
530 |
2e-23 |
SMART |
|
Pfam:PAP_assoc
|
609 |
662 |
8.8e-15 |
PFAM |
|
low complexity region
|
704 |
719 |
N/A |
INTRINSIC |
|
low complexity region
|
776 |
789 |
N/A |
INTRINSIC |
|
ZnF_C2HC
|
892 |
908 |
7.79e-3 |
SMART |
|
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.5%
- 20x: 95.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] ZCCHC11 is an RNA uridyltransferase (EC 2.7.7.52) that uses UTP to add uridines to the 3-prime end of substrate RNA molecules (Jones et al., 2009 [PubMed 19701194]).[supplied by OMIM, Jan 2011]
PHENOTYPE: Mice homozygous for a gene trap allele exhibit partial postnatal lethality associated with postnatal growth retardation and reduced circulating insulin-like growth factor I levels. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 63 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca6 |
CTGTAGGAAATCTTCAATGT |
CTGT |
11: 110,210,193 (GRCm38) |
|
probably null |
Het |
| Adcy8 |
C |
T |
15: 64,920,934 (GRCm38) |
G58S |
probably benign |
Het |
| Adgra2 |
T |
A |
8: 27,114,204 (GRCm38) |
L24* |
probably null |
Het |
| Ampd2 |
C |
A |
3: 108,085,369 (GRCm38) |
|
probably benign |
Het |
| Ankrd26 |
T |
G |
6: 118,525,791 (GRCm38) |
E806A |
probably damaging |
Het |
| Apol9b |
A |
G |
15: 77,735,439 (GRCm38) |
D145G |
probably benign |
Het |
| Ash1l |
T |
A |
3: 88,985,419 (GRCm38) |
M1535K |
probably benign |
Het |
| Atf6 |
A |
G |
1: 170,794,735 (GRCm38) |
M439T |
probably damaging |
Het |
| B3glct |
A |
T |
5: 149,754,156 (GRCm38) |
M417L |
probably damaging |
Het |
| Cep192 |
A |
T |
18: 67,820,360 (GRCm38) |
T483S |
probably damaging |
Het |
| Cep290 |
G |
A |
10: 100,518,795 (GRCm38) |
E914K |
probably damaging |
Het |
| Chst15 |
C |
T |
7: 132,270,385 (GRCm38) |
A56T |
probably damaging |
Het |
| Col27a1 |
A |
T |
4: 63,225,424 (GRCm38) |
T450S |
probably benign |
Het |
| Cpsf2 |
A |
G |
12: 101,985,335 (GRCm38) |
N177S |
probably damaging |
Het |
| Csmd3 |
CCTTTGCGCTT |
CCTT |
15: 47,741,236 (GRCm38) |
|
probably null |
Het |
| Ctc1 |
C |
T |
11: 69,035,615 (GRCm38) |
A859V |
possibly damaging |
Het |
| Dcakd |
A |
G |
11: 102,997,357 (GRCm38) |
Y134H |
possibly damaging |
Het |
| Dctn3 |
G |
T |
4: 41,723,065 (GRCm38) |
Y22* |
probably null |
Het |
| Dync2h1 |
T |
A |
9: 7,124,797 (GRCm38) |
D2025V |
probably damaging |
Het |
| Dync2li1 |
T |
C |
17: 84,636,274 (GRCm38) |
S92P |
probably damaging |
Het |
| Eml5 |
A |
G |
12: 98,887,097 (GRCm38) |
V81A |
probably damaging |
Het |
| Espl1 |
C |
T |
15: 102,319,588 (GRCm38) |
R1625C |
probably damaging |
Het |
| Fam181a |
T |
C |
12: 103,316,526 (GRCm38) |
V230A |
probably benign |
Het |
| Fanci |
T |
A |
7: 79,395,995 (GRCm38) |
D28E |
probably benign |
Het |
| Fmn1 |
A |
G |
2: 113,365,617 (GRCm38) |
N554S |
unknown |
Het |
| Frem2 |
T |
C |
3: 53,537,330 (GRCm38) |
Y2460C |
probably damaging |
Het |
| Fscb |
G |
A |
12: 64,473,793 (GRCm38) |
P300S |
probably damaging |
Het |
| Gm28042 |
A |
G |
2: 120,036,748 (GRCm38) |
D438G |
probably benign |
Het |
| Ldaf1 |
A |
G |
7: 120,120,239 (GRCm38) |
E157G |
possibly damaging |
Het |
| Map1b |
C |
T |
13: 99,429,338 (GRCm38) |
V2292M |
unknown |
Het |
| Nbas |
A |
G |
12: 13,330,646 (GRCm38) |
D635G |
possibly damaging |
Het |
| Ncapg2 |
A |
G |
12: 116,450,475 (GRCm38) |
|
probably null |
Het |
| Nrp2 |
A |
T |
1: 62,744,355 (GRCm38) |
E205V |
probably damaging |
Het |
| Pcdhb3 |
A |
T |
18: 37,302,186 (GRCm38) |
T402S |
possibly damaging |
Het |
| Phc1 |
T |
C |
6: 122,322,337 (GRCm38) |
N638D |
possibly damaging |
Het |
| Plcb1 |
A |
G |
2: 135,346,330 (GRCm38) |
N781S |
possibly damaging |
Het |
| Prkdc |
T |
A |
16: 15,705,207 (GRCm38) |
D1164E |
probably damaging |
Het |
| Proser2 |
T |
A |
2: 6,100,695 (GRCm38) |
R353W |
possibly damaging |
Het |
| Prxl2b |
T |
G |
4: 154,898,149 (GRCm38) |
Y56S |
probably damaging |
Het |
| Ptges |
T |
A |
2: 30,892,696 (GRCm38) |
T115S |
probably benign |
Het |
| Ptprk |
A |
T |
10: 28,560,142 (GRCm38) |
D833V |
probably damaging |
Het |
| Pum1 |
G |
T |
4: 130,728,084 (GRCm38) |
L269F |
probably damaging |
Het |
| Pum1 |
T |
A |
4: 130,728,083 (GRCm38) |
L173* |
probably null |
Het |
| Rasgrp4 |
A |
G |
7: 29,139,045 (GRCm38) |
Y106C |
probably damaging |
Het |
| Rbbp6 |
T |
A |
7: 122,999,474 (GRCm38) |
|
probably benign |
Het |
| Rdh1 |
A |
G |
10: 127,760,172 (GRCm38) |
T79A |
possibly damaging |
Het |
| Relb |
A |
C |
7: 19,613,761 (GRCm38) |
|
probably null |
Het |
| Rnf122 |
G |
A |
8: 31,112,164 (GRCm38) |
W6* |
probably null |
Het |
| Rnf31 |
A |
G |
14: 55,592,537 (GRCm38) |
E138G |
possibly damaging |
Het |
| Scaf8 |
G |
A |
17: 3,197,210 (GRCm38) |
R936Q |
probably damaging |
Het |
| Scube3 |
T |
A |
17: 28,166,134 (GRCm38) |
V686D |
possibly damaging |
Het |
| Snrnp27 |
A |
T |
6: 86,676,214 (GRCm38) |
C141S |
probably benign |
Het |
| Spns2 |
C |
T |
11: 72,458,671 (GRCm38) |
V252M |
possibly damaging |
Het |
| Tomm40l |
C |
T |
1: 171,220,134 (GRCm38) |
S220N |
probably damaging |
Het |
| Trim17 |
A |
G |
11: 58,971,411 (GRCm38) |
D423G |
probably damaging |
Het |
| Trpc6 |
A |
AT |
9: 8,610,465 (GRCm38) |
|
probably null |
Het |
| Uba5 |
A |
T |
9: 104,060,243 (GRCm38) |
M89K |
probably damaging |
Het |
| Vav2 |
T |
C |
2: 27,273,706 (GRCm38) |
D628G |
probably damaging |
Het |
| Vmn2r107 |
T |
C |
17: 20,375,642 (GRCm38) |
L819P |
probably damaging |
Het |
| Vmn2r25 |
A |
T |
6: 123,839,559 (GRCm38) |
D354E |
possibly damaging |
Het |
| Xrn1 |
A |
G |
9: 96,006,820 (GRCm38) |
E984G |
possibly damaging |
Het |
| Zbtb17 |
T |
C |
4: 141,464,246 (GRCm38) |
V223A |
probably benign |
Het |
| Zfp592 |
T |
C |
7: 81,041,438 (GRCm38) |
S1122P |
possibly damaging |
Het |
|
| Other mutations in Tut4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00504:Tut4
|
APN |
4 |
108,550,728 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00684:Tut4
|
APN |
4 |
108,479,466 (GRCm38) |
missense |
possibly damaging |
0.80 |
|
IGL01598:Tut4
|
APN |
4 |
108,550,820 (GRCm38) |
unclassified |
probably benign |
|
|
IGL01599:Tut4
|
APN |
4 |
108,513,399 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
IGL02088:Tut4
|
APN |
4 |
108,512,218 (GRCm38) |
splice site |
probably benign |
|
|
IGL02451:Tut4
|
APN |
4 |
108,529,276 (GRCm38) |
nonsense |
probably null |
|
|
IGL02667:Tut4
|
APN |
4 |
108,558,708 (GRCm38) |
splice site |
probably benign |
|
|
IGL03080:Tut4
|
APN |
4 |
108,505,824 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03374:Tut4
|
APN |
4 |
108,558,777 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Flatter
|
UTSW |
4 |
108,542,711 (GRCm38) |
critical splice donor site |
probably null |
|
|
Ingratiate
|
UTSW |
4 |
108,512,195 (GRCm38) |
missense |
probably damaging |
1.00 |
|
oedipus
|
UTSW |
4 |
108,549,355 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Please
|
UTSW |
4 |
108,512,886 (GRCm38) |
nonsense |
probably null |
|
|
H8786:Tut4
|
UTSW |
4 |
108,550,815 (GRCm38) |
critical splice donor site |
probably null |
|
|
IGL02799:Tut4
|
UTSW |
4 |
108,513,528 (GRCm38) |
missense |
probably benign |
|
|
R0013:Tut4
|
UTSW |
4 |
108,530,955 (GRCm38) |
splice site |
probably benign |
|
|
R0013:Tut4
|
UTSW |
4 |
108,530,955 (GRCm38) |
splice site |
probably benign |
|
|
R0051:Tut4
|
UTSW |
4 |
108,527,004 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0051:Tut4
|
UTSW |
4 |
108,527,004 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0410:Tut4
|
UTSW |
4 |
108,486,555 (GRCm38) |
missense |
probably benign |
0.27 |
|
R0698:Tut4
|
UTSW |
4 |
108,555,533 (GRCm38) |
missense |
probably benign |
0.22 |
|
R0745:Tut4
|
UTSW |
4 |
108,502,955 (GRCm38) |
splice site |
probably benign |
|
|
R1080:Tut4
|
UTSW |
4 |
108,479,499 (GRCm38) |
missense |
possibly damaging |
0.82 |
|
R1774:Tut4
|
UTSW |
4 |
108,507,955 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1809:Tut4
|
UTSW |
4 |
108,549,355 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1869:Tut4
|
UTSW |
4 |
108,529,300 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1874:Tut4
|
UTSW |
4 |
108,550,725 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1958:Tut4
|
UTSW |
4 |
108,555,706 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1976:Tut4
|
UTSW |
4 |
108,479,523 (GRCm38) |
missense |
probably benign |
0.01 |
|
R2034:Tut4
|
UTSW |
4 |
108,512,195 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2251:Tut4
|
UTSW |
4 |
108,520,208 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3001:Tut4
|
UTSW |
4 |
108,512,928 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3002:Tut4
|
UTSW |
4 |
108,512,928 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3003:Tut4
|
UTSW |
4 |
108,512,928 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4170:Tut4
|
UTSW |
4 |
108,548,059 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4667:Tut4
|
UTSW |
4 |
108,495,159 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4868:Tut4
|
UTSW |
4 |
108,549,220 (GRCm38) |
splice site |
probably benign |
|
|
R4989:Tut4
|
UTSW |
4 |
108,526,845 (GRCm38) |
unclassified |
probably benign |
|
|
R5014:Tut4
|
UTSW |
4 |
108,526,846 (GRCm38) |
unclassified |
probably benign |
|
|
R5118:Tut4
|
UTSW |
4 |
108,520,292 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R5431:Tut4
|
UTSW |
4 |
108,491,412 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5645:Tut4
|
UTSW |
4 |
108,557,373 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5661:Tut4
|
UTSW |
4 |
108,513,187 (GRCm38) |
missense |
probably benign |
0.05 |
|
R5877:Tut4
|
UTSW |
4 |
108,512,923 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6307:Tut4
|
UTSW |
4 |
108,555,620 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6326:Tut4
|
UTSW |
4 |
108,478,980 (GRCm38) |
missense |
probably benign |
0.02 |
|
R6407:Tut4
|
UTSW |
4 |
108,558,782 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6493:Tut4
|
UTSW |
4 |
108,526,805 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6587:Tut4
|
UTSW |
4 |
108,479,449 (GRCm38) |
missense |
probably benign |
|
|
R7215:Tut4
|
UTSW |
4 |
108,527,008 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7413:Tut4
|
UTSW |
4 |
108,549,336 (GRCm38) |
missense |
possibly damaging |
0.69 |
|
R7584:Tut4
|
UTSW |
4 |
108,479,346 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7872:Tut4
|
UTSW |
4 |
108,517,518 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7970:Tut4
|
UTSW |
4 |
108,486,454 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8214:Tut4
|
UTSW |
4 |
108,512,150 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8297:Tut4
|
UTSW |
4 |
108,479,708 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
R8504:Tut4
|
UTSW |
4 |
108,530,942 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8514:Tut4
|
UTSW |
4 |
108,557,357 (GRCm38) |
missense |
possibly damaging |
0.65 |
|
R8557:Tut4
|
UTSW |
4 |
108,542,711 (GRCm38) |
critical splice donor site |
probably null |
|
|
R8750:Tut4
|
UTSW |
4 |
108,550,743 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8805:Tut4
|
UTSW |
4 |
108,549,378 (GRCm38) |
missense |
possibly damaging |
0.83 |
|
R8903:Tut4
|
UTSW |
4 |
108,479,211 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9003:Tut4
|
UTSW |
4 |
108,542,832 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R9218:Tut4
|
UTSW |
4 |
108,512,886 (GRCm38) |
nonsense |
probably null |
|
|
R9412:Tut4
|
UTSW |
4 |
108,557,364 (GRCm38) |
missense |
|
|
|
R9546:Tut4
|
UTSW |
4 |
108,513,232 (GRCm38) |
missense |
probably benign |
0.05 |
|
R9547:Tut4
|
UTSW |
4 |
108,513,232 (GRCm38) |
missense |
probably benign |
0.05 |
|
R9721:Tut4
|
UTSW |
4 |
108,555,581 (GRCm38) |
missense |
probably benign |
0.22 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGCATATAACAAATGACTCCAGG -3'
(R):5'- TTCACAAACATGGACAGATACAGTC -3'
Sequencing Primer
(F):5'- CCAGGAGAGGTAAGAGATTCTTTTG -3'
(R):5'- CAACATTTTAGATAAGCTGGCTGCCC -3'
|
| Posted On |
2014-10-01 |
Incidental Mutation