Mutagenetix > Incidental Mutation

Incidental Mutation 'R2165:Psg19'

235425

Institutional Source

Beutler Lab

Gene Symbol

Psg19

Ensembl Gene

ENSMUSG00000004542

Gene Name

pregnancy specific glycoprotein 19

Synonyms

CGM7, Cea-4, Cea4

MMRRC Submission

040168-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.055) question?

Stock #

R2165 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18789567-18798520 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 18796986 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 81 (Y81F)

Ref Sequence

ENSEMBL: ENSMUSP00000138621 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004657] [ENSMUST00000182853]

AlphaFold

Q4KL31

Predicted Effect

probably benign
Transcript: ENSMUST00000004657
AA Change: Y81F

PolyPhen 2 Score 0.277 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000004657
Gene: ENSMUSG00000004542
AA Change: Y81F

Domain	Start	End	E-Value	Type
IG	40	141	9.2e-3	SMART
IG	160	261	4.5e0	SMART
IG	280	381	4.67e-4	SMART
IGc2	397	461	1.58e-10	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182681

Predicted Effect

possibly damaging
Transcript: ENSMUST00000182853
AA Change: Y81F

PolyPhen 2 Score 0.698 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000138621
Gene: ENSMUSG00000004542
AA Change: Y81F

Domain	Start	End	E-Value	Type
IG	40	141	9.2e-3	SMART
IG	160	261	4.67e-4	SMART
IGc2	277	341	1.58e-10	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182916

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207896

Meta Mutation Damage Score

0.1703

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.6%
20x: 96.0%

Validation Efficiency

99% (71/72)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	A	G	3: 122,112,399	T806A	possibly damaging	Het
Adgre1	T	G	17: 57,419,338	L403R	probably damaging	Het
AF067061	A	T	13: 120,264,097	Q99L	probably damaging	Het
Alox12	A	T	11: 70,242,572		probably null	Het
Ankib1	A	T	5: 3,713,210	D506E	possibly damaging	Het
Ascc3	T	G	10: 50,721,839	Y1268D	probably damaging	Het
Bik	A	G	15: 83,541,423	M42V	probably benign	Het
Bola1	A	T	3: 96,197,201	S26T	probably benign	Het
Bub1	T	C	2: 127,801,281	I1048V	probably benign	Het
Cad	A	G	5: 31,062,220	N621S	probably damaging	Het
Camkv	C	A	9: 107,945,600	N69K	possibly damaging	Het
Ccdc110	T	C	8: 45,942,839	M589T	probably benign	Het
Ccdc154	T	A	17: 25,170,890	V498E	probably damaging	Het
Ccr1l1	A	G	9: 123,977,654	L252P	probably damaging	Het
Cdh1	T	C	8: 106,664,321	C690R	probably damaging	Het
Cfap157	T	G	2: 32,778,163		probably null	Het
Cux2	A	G	5: 121,887,477	S43P	possibly damaging	Het
Cyb5rl	C	T	4: 107,068,683	P21S	probably damaging	Het
Cyp51	T	G	5: 4,086,594	Q400P	probably damaging	Het
Dnah7b	T	C	1: 46,097,992		probably benign	Het
Ephb4	A	G	5: 137,354,426	I90M	probably benign	Het
Fam13c	A	G	10: 70,542,693	N269S	probably damaging	Het
Fam83c	T	A	2: 155,831,524	Y248F	possibly damaging	Het
Fat2	A	G	11: 55,303,716	F1166L	probably benign	Het
Fem1a	A	G	17: 56,257,686	N260D	probably benign	Het
Fnbp4	T	A	2: 90,767,399		probably null	Het
Fut9	T	A	4: 25,619,733	*360Y	probably null	Het
Fut9	T	A	4: 25,619,734	*360L	probably null	Het
Gm11639	G	A	11: 104,751,862	V1104I	possibly damaging	Het
Gm3727	T	A	14: 7,264,625	Q10L	probably damaging	Het
Gpat2	G	A	2: 127,428,291	V75M	probably damaging	Het
Haspin	A	C	11: 73,136,630	N544K	probably damaging	Het
Havcr1	A	G	11: 46,778,552	N286S	probably benign	Het
Lrp6	A	C	6: 134,459,283	C1307G	probably damaging	Het
Lrrc2	A	C	9: 110,979,577	H294P	possibly damaging	Het
Mon2	A	C	10: 123,042,364		probably null	Het
Mrc2	G	A	11: 105,348,431		probably null	Het
Mrgprb1	T	C	7: 48,447,322	I281V	probably benign	Het
Muc4	A	G	16: 32,750,476	E118G	probably damaging	Het
Nefh	T	C	11: 4,943,872	D394G	probably damaging	Het
Neurl4	A	G	11: 69,903,221	T168A	probably benign	Het
Olfr347	T	A	2: 36,734,701	C127S	probably damaging	Het
Olfr642	T	C	7: 104,049,638	T239A	probably benign	Het
Olfr982	A	G	9: 40,074,915	N207D	possibly damaging	Het
Olfr987	A	T	2: 85,331,102	N265K	probably benign	Het
Oxsr1	A	C	9: 119,294,432	M92R	probably damaging	Het
Pde8a	T	C	7: 81,295,768		probably null	Het
Pex5l	T	A	3: 32,953,132		probably null	Het
Pik3r4	T	A	9: 105,672,785	M1025K	probably benign	Het
Plch1	C	T	3: 63,698,482	E1325K	probably benign	Het
Plin2	A	T	4: 86,668,432	V54E	probably damaging	Het
Pqlc3	G	A	12: 16,989,839	L192F	probably damaging	Het
Prss47	A	T	13: 65,045,073	I298N	probably damaging	Het
Prune2	A	G	19: 17,120,182	R1017G	probably benign	Het
Ptch1	T	G	13: 63,524,959	E944A	probably benign	Het
Rrnad1	A	T	3: 87,927,053		probably null	Het
Serpinb1a	T	C	13: 32,850,414		probably benign	Het
Sh3pxd2a	A	T	19: 47,278,355	V265E	probably damaging	Het
Slc22a17	A	T	14: 54,908,825	Y337*	probably null	Het
Slc25a27	A	G	17: 43,657,772	V138A	probably benign	Het
Slc4a2	A	G	5: 24,431,316	Y220C	probably damaging	Het
Stab1	A	T	14: 31,168,435	S20T	probably benign	Het
Thsd1	G	T	8: 22,238,522		probably benign	Het
Tmem204	G	A	17: 25,080,592		probably benign	Het
Tom1l1	A	G	11: 90,649,895		probably benign	Het
Toporsl	T	A	4: 52,612,072	F655Y	possibly damaging	Het
Vmn2r98	A	G	17: 19,081,291	K852E	unknown	Het
Wdpcp	T	G	11: 21,691,884	L174R	probably damaging	Het
Zbbx	G	A	3: 75,112,107	P99S	probably damaging	Het
Zfhx4	C	T	3: 5,403,358	P2859S	probably benign	Het
Zfp600	A	T	4: 146,196,918	R719*	probably null	Het
Zfp697	C	A	3: 98,428,014	A365E	unknown	Het
Zfp957	A	C	14: 79,213,613	S249A	probably benign	Het

Other mutations in Psg19

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01019:Psg19	APN	7	18794046	nonsense	probably null
IGL01864:Psg19	APN	7	18794152	missense	probably benign	0.03
IGL01996:Psg19	APN	7	18790061	missense	possibly damaging	0.45
IGL02603:Psg19	APN	7	18792768	missense	probably benign	0.04
PIT4280001:Psg19	UTSW	7	18796906	missense	probably damaging	0.98
R0139:Psg19	UTSW	7	18797017	missense	possibly damaging	0.65
R0894:Psg19	UTSW	7	18794062	missense	probably benign	0.14
R1394:Psg19	UTSW	7	18797058	missense	probably damaging	0.99
R1911:Psg19	UTSW	7	18794268	missense	probably damaging	0.96
R2116:Psg19	UTSW	7	18794255	missense	probably damaging	0.99
R4791:Psg19	UTSW	7	18794146	missense	probably damaging	1.00
R5093:Psg19	UTSW	7	18796969	missense	probably benign	0.00
R6290:Psg19	UTSW	7	18794089	missense	probably benign	0.00
R7255:Psg19	UTSW	7	18794048	missense	probably benign	0.17
R7718:Psg19	UTSW	7	18792443	missense	probably benign	0.05
R8676:Psg19	UTSW	7	18794065	missense	probably benign
R8751:Psg19	UTSW	7	18796963	missense	probably benign	0.27
R9022:Psg19	UTSW	7	18796837	missense	probably benign	0.01
R9022:Psg19	UTSW	7	18797119	missense	probably benign	0.44

Predicted Primers

PCR Primer
(F):5'- ACCTGAAGGAACATGGATGTATTTG -3'
(R):5'- TCACAGCTGCTCAGGATTGG -3'

Sequencing Primer
(F):5'- GGAACATGGATGTATTTGATACCAC -3'
(R):5'- CTCAGGATTGGTGGCTTTTCTCTC -3'

Posted On

2014-10-01