Mutagenetix > Incidental Mutation

Incidental Mutation 'R2165:Thsd1'

235429

Institutional Source

Beutler Lab

Gene Symbol

Thsd1

Ensembl Gene

ENSMUSG00000031480

Gene Name

thrombospondin, type I, domain 1

Synonyms

Tmtsp, 4833423O18Rik

MMRRC Submission

040168-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2165 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

22227313-22261334 bp(+) (GRCm38)

Type of Mutation

intron

DNA Base Change (assembly)

G to T at 22238522 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000148214 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069828] [ENSMUST00000160585] [ENSMUST00000162447]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000069828

SMART Domains

Protein: ENSMUSP00000067701
Gene: ENSMUSG00000031480

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
TSP1	342	392	4.55e-8	SMART
low complexity region	396	408	N/A	INTRINSIC
transmembrane domain	413	435	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160585

SMART Domains

Protein: ENSMUSP00000125118
Gene: ENSMUSG00000031480

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
low complexity region	343	355	N/A	INTRINSIC
transmembrane domain	360	382	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000162447

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.6%
20x: 96.0%

Validation Efficiency

99% (71/72)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a type 1 thrombospondin domain, which is found in a number of proteins involved in the complement pathway, as well as in extracellular matrix proteins. Alternatively spliced transcript variants encoding different isoforms have been observed for this gene. [provided by RefSeq, Jan 2009]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	A	G	3: 122,112,399	T806A	possibly damaging	Het
Adgre1	T	G	17: 57,419,338	L403R	probably damaging	Het
AF067061	A	T	13: 120,264,097	Q99L	probably damaging	Het
Alox12	A	T	11: 70,242,572		probably null	Het
Ankib1	A	T	5: 3,713,210	D506E	possibly damaging	Het
Ascc3	T	G	10: 50,721,839	Y1268D	probably damaging	Het
Bik	A	G	15: 83,541,423	M42V	probably benign	Het
Bola1	A	T	3: 96,197,201	S26T	probably benign	Het
Bub1	T	C	2: 127,801,281	I1048V	probably benign	Het
Cad	A	G	5: 31,062,220	N621S	probably damaging	Het
Camkv	C	A	9: 107,945,600	N69K	possibly damaging	Het
Ccdc110	T	C	8: 45,942,839	M589T	probably benign	Het
Ccdc154	T	A	17: 25,170,890	V498E	probably damaging	Het
Ccr1l1	A	G	9: 123,977,654	L252P	probably damaging	Het
Cdh1	T	C	8: 106,664,321	C690R	probably damaging	Het
Cfap157	T	G	2: 32,778,163		probably null	Het
Cux2	A	G	5: 121,887,477	S43P	possibly damaging	Het
Cyb5rl	C	T	4: 107,068,683	P21S	probably damaging	Het
Cyp51	T	G	5: 4,086,594	Q400P	probably damaging	Het
Dnah7b	T	C	1: 46,097,992		probably benign	Het
Ephb4	A	G	5: 137,354,426	I90M	probably benign	Het
Fam13c	A	G	10: 70,542,693	N269S	probably damaging	Het
Fam83c	T	A	2: 155,831,524	Y248F	possibly damaging	Het
Fat2	A	G	11: 55,303,716	F1166L	probably benign	Het
Fem1a	A	G	17: 56,257,686	N260D	probably benign	Het
Fnbp4	T	A	2: 90,767,399		probably null	Het
Fut9	T	A	4: 25,619,733	*360Y	probably null	Het
Fut9	T	A	4: 25,619,734	*360L	probably null	Het
Gm11639	G	A	11: 104,751,862	V1104I	possibly damaging	Het
Gm3727	T	A	14: 7,264,625	Q10L	probably damaging	Het
Gpat2	G	A	2: 127,428,291	V75M	probably damaging	Het
Haspin	A	C	11: 73,136,630	N544K	probably damaging	Het
Havcr1	A	G	11: 46,778,552	N286S	probably benign	Het
Lrp6	A	C	6: 134,459,283	C1307G	probably damaging	Het
Lrrc2	A	C	9: 110,979,577	H294P	possibly damaging	Het
Mon2	A	C	10: 123,042,364		probably null	Het
Mrc2	G	A	11: 105,348,431		probably null	Het
Mrgprb1	T	C	7: 48,447,322	I281V	probably benign	Het
Muc4	A	G	16: 32,750,476	E118G	probably damaging	Het
Nefh	T	C	11: 4,943,872	D394G	probably damaging	Het
Neurl4	A	G	11: 69,903,221	T168A	probably benign	Het
Olfr347	T	A	2: 36,734,701	C127S	probably damaging	Het
Olfr642	T	C	7: 104,049,638	T239A	probably benign	Het
Olfr982	A	G	9: 40,074,915	N207D	possibly damaging	Het
Olfr987	A	T	2: 85,331,102	N265K	probably benign	Het
Oxsr1	A	C	9: 119,294,432	M92R	probably damaging	Het
Pde8a	T	C	7: 81,295,768		probably null	Het
Pex5l	T	A	3: 32,953,132		probably null	Het
Pik3r4	T	A	9: 105,672,785	M1025K	probably benign	Het
Plch1	C	T	3: 63,698,482	E1325K	probably benign	Het
Plin2	A	T	4: 86,668,432	V54E	probably damaging	Het
Pqlc3	G	A	12: 16,989,839	L192F	probably damaging	Het
Prss47	A	T	13: 65,045,073	I298N	probably damaging	Het
Prune2	A	G	19: 17,120,182	R1017G	probably benign	Het
Psg19	T	A	7: 18,796,986	Y81F	possibly damaging	Het
Ptch1	T	G	13: 63,524,959	E944A	probably benign	Het
Rrnad1	A	T	3: 87,927,053		probably null	Het
Serpinb1a	T	C	13: 32,850,414		probably benign	Het
Sh3pxd2a	A	T	19: 47,278,355	V265E	probably damaging	Het
Slc22a17	A	T	14: 54,908,825	Y337*	probably null	Het
Slc25a27	A	G	17: 43,657,772	V138A	probably benign	Het
Slc4a2	A	G	5: 24,431,316	Y220C	probably damaging	Het
Stab1	A	T	14: 31,168,435	S20T	probably benign	Het
Tmem204	G	A	17: 25,080,592		probably benign	Het
Tom1l1	A	G	11: 90,649,895		probably benign	Het
Toporsl	T	A	4: 52,612,072	F655Y	possibly damaging	Het
Vmn2r98	A	G	17: 19,081,291	K852E	unknown	Het
Wdpcp	T	G	11: 21,691,884	L174R	probably damaging	Het
Zbbx	G	A	3: 75,112,107	P99S	probably damaging	Het
Zfhx4	C	T	3: 5,403,358	P2859S	probably benign	Het
Zfp600	A	T	4: 146,196,918	R719*	probably null	Het
Zfp697	C	A	3: 98,428,014	A365E	unknown	Het
Zfp957	A	C	14: 79,213,613	S249A	probably benign	Het

Other mutations in Thsd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01936:Thsd1	APN	8	22252231	missense	probably damaging	1.00
IGL02288:Thsd1	APN	8	22259549	missense	probably damaging	1.00
IGL02517:Thsd1	APN	8	22243438	missense	probably damaging	1.00
IGL02591:Thsd1	APN	8	22258727	missense	probably damaging	1.00
IGL03378:Thsd1	APN	8	22243778	missense	probably benign	0.13
R0137:Thsd1	UTSW	8	22243039	missense	probably damaging	1.00
R0507:Thsd1	UTSW	8	22258679	missense	probably damaging	1.00
R0854:Thsd1	UTSW	8	22258571	missense	probably damaging	0.99
R1109:Thsd1	UTSW	8	22243692	missense	possibly damaging	0.93
R1402:Thsd1	UTSW	8	22259368	missense	possibly damaging	0.68
R1402:Thsd1	UTSW	8	22259368	missense	possibly damaging	0.68
R1899:Thsd1	UTSW	8	22252318	splice site	probably benign
R1900:Thsd1	UTSW	8	22252318	splice site	probably benign
R2008:Thsd1	UTSW	8	22259231	missense	probably benign	0.23
R2048:Thsd1	UTSW	8	22259317	missense	probably benign	0.01
R2090:Thsd1	UTSW	8	22259657	missense	possibly damaging	0.95
R2209:Thsd1	UTSW	8	22258871	missense	probably damaging	1.00
R3831:Thsd1	UTSW	8	22243116	missense	possibly damaging	0.92
R3833:Thsd1	UTSW	8	22243116	missense	possibly damaging	0.92
R3847:Thsd1	UTSW	8	22259411	missense	probably damaging	0.97
R4049:Thsd1	UTSW	8	22243164	missense	possibly damaging	0.75
R4454:Thsd1	UTSW	8	22243578	missense	probably damaging	1.00
R4659:Thsd1	UTSW	8	22259298	nonsense	probably null
R4997:Thsd1	UTSW	8	22243324	missense	probably damaging	0.98
R6440:Thsd1	UTSW	8	22258553	missense	possibly damaging	0.59
R6457:Thsd1	UTSW	8	22243347	missense	probably damaging	0.97
R6488:Thsd1	UTSW	8	22243717	missense	probably benign	0.36
R6519:Thsd1	UTSW	8	22259065	missense	probably damaging	1.00
R7267:Thsd1	UTSW	8	22243581	missense	probably benign	0.10
R7448:Thsd1	UTSW	8	22243333	missense	possibly damaging	0.89
R7698:Thsd1	UTSW	8	22258987	nonsense	probably null
R7733:Thsd1	UTSW	8	22258721	missense	probably damaging	1.00
R7792:Thsd1	UTSW	8	22243098	missense	probably damaging	0.99
R7894:Thsd1	UTSW	8	22259569	missense	probably damaging	0.99
R8181:Thsd1	UTSW	8	22243006	missense	probably damaging	0.99
R8192:Thsd1	UTSW	8	22243902	missense	probably benign	0.22
R8426:Thsd1	UTSW	8	22243638	missense	probably benign	0.01
R8775:Thsd1	UTSW	8	22259627	missense	possibly damaging	0.48
R8775-TAIL:Thsd1	UTSW	8	22259627	missense	possibly damaging	0.48
R9339:Thsd1	UTSW	8	22243882	missense	probably damaging	1.00
R9494:Thsd1	UTSW	8	22243252	missense	probably benign	0.00
R9550:Thsd1	UTSW	8	22243010	start gained	probably benign
X0023:Thsd1	UTSW	8	22259567	missense	probably damaging	1.00
Z1088:Thsd1	UTSW	8	22252219	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGTTTGACTTCTTAGAATGGCTTGC -3'
(R):5'- GAGTTCAGTTGATCCATTCCACC -3'

Sequencing Primer
(F):5'- GATCCTCTTGGAATAAGCAGTGACC -3'
(R):5'- ATTCCACCCCTCCCATGCAG -3'

Posted On

2014-10-01