Mutagenetix > Incidental Mutation

Incidental Mutation 'R2165:Tom1l1'

235448

Institutional Source

Beutler Lab

Gene Symbol

Tom1l1

Ensembl Gene

ENSMUSG00000020541

Gene Name

target of myb1-like 1 (chicken)

Synonyms

2310045L10Rik, Srcasm

MMRRC Submission

040168-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.169) question?

Stock #

R2165 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

90536516-90579105 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 90540721 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000103501 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020849] [ENSMUST00000020851] [ENSMUST00000107867] [ENSMUST00000107868] [ENSMUST00000107869]

AlphaFold

Q923U0

Predicted Effect

probably benign
Transcript: ENSMUST00000020849

SMART Domains

Protein: ENSMUSP00000020849
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
VHS	15	150	7.37e-53	SMART
Pfam:GAT	212	288	5.8e-17	PFAM
low complexity region	340	349	N/A	INTRINSIC
low complexity region	409	416	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000020851

SMART Domains

Protein: ENSMUSP00000020851
Gene: ENSMUSG00000020544

Domain	Start	End	E-Value	Type
low complexity region	42	54	N/A	INTRINSIC
Pfam:CtaG_Cox11	112	262	5.5e-62	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107867

SMART Domains

Protein: ENSMUSP00000103499
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
Pfam:GAT	1	50	5.4e-12	PFAM
low complexity region	93	102	N/A	INTRINSIC
low complexity region	162	169	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107868

SMART Domains

Protein: ENSMUSP00000103500
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
Pfam:VHS	1	73	4.2e-10	PFAM
Pfam:GAT	119	220	5.5e-29	PFAM
low complexity region	263	272	N/A	INTRINSIC
low complexity region	332	339	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107869

SMART Domains

Protein: ENSMUSP00000103501
Gene: ENSMUSG00000020541

Domain	Start	End	E-Value	Type
VHS	15	152	7.23e-38	SMART
low complexity region	264	273	N/A	INTRINSIC
low complexity region	333	340	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127034

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.6%
20x: 96.0%

Validation Efficiency

99% (71/72)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	A	G	3: 121,906,048 (GRCm39)	T806A	possibly damaging	Het
Adgre1	T	G	17: 57,726,338 (GRCm39)	L403R	probably damaging	Het
Alox12	A	T	11: 70,133,398 (GRCm39)		probably null	Het
Ankib1	A	T	5: 3,763,210 (GRCm39)	D506E	possibly damaging	Het
Ascc3	T	G	10: 50,597,935 (GRCm39)	Y1268D	probably damaging	Het
Bik	A	G	15: 83,425,624 (GRCm39)	M42V	probably benign	Het
Bola1	A	T	3: 96,104,517 (GRCm39)	S26T	probably benign	Het
Bub1	T	C	2: 127,643,201 (GRCm39)	I1048V	probably benign	Het
Cad	A	G	5: 31,219,564 (GRCm39)	N621S	probably damaging	Het
Camkv	C	A	9: 107,822,799 (GRCm39)	N69K	possibly damaging	Het
Ccdc110	T	C	8: 46,395,876 (GRCm39)	M589T	probably benign	Het
Ccdc154	T	A	17: 25,389,864 (GRCm39)	V498E	probably damaging	Het
Ccr1l1	A	G	9: 123,777,691 (GRCm39)	L252P	probably damaging	Het
Cdh1	T	C	8: 107,390,953 (GRCm39)	C690R	probably damaging	Het
Cfap157	T	G	2: 32,668,175 (GRCm39)		probably null	Het
Cux2	A	G	5: 122,025,540 (GRCm39)	S43P	possibly damaging	Het
Cyb5rl	C	T	4: 106,925,880 (GRCm39)	P21S	probably damaging	Het
Cyp51	T	G	5: 4,136,594 (GRCm39)	Q400P	probably damaging	Het
Dnah7b	T	C	1: 46,137,152 (GRCm39)		probably benign	Het
Efcab3	G	A	11: 104,642,688 (GRCm39)	V1104I	possibly damaging	Het
Ephb4	A	G	5: 137,352,688 (GRCm39)	I90M	probably benign	Het
Fam13c	A	G	10: 70,378,523 (GRCm39)	N269S	probably damaging	Het
Fam83c	T	A	2: 155,673,444 (GRCm39)	Y248F	possibly damaging	Het
Fat2	A	G	11: 55,194,542 (GRCm39)	F1166L	probably benign	Het
Fem1a	A	G	17: 56,564,686 (GRCm39)	N260D	probably benign	Het
Fnbp4	T	A	2: 90,597,743 (GRCm39)		probably null	Het
Fut9	T	A	4: 25,619,733 (GRCm39)	*360Y	probably null	Het
Fut9	T	A	4: 25,619,734 (GRCm39)	*360L	probably null	Het
Gm3727	T	A	14: 7,264,625 (GRCm38)	Q10L	probably damaging	Het
Gpat2	G	A	2: 127,270,211 (GRCm39)	V75M	probably damaging	Het
Haspin	A	C	11: 73,027,456 (GRCm39)	N544K	probably damaging	Het
Havcr1	A	G	11: 46,669,379 (GRCm39)	N286S	probably benign	Het
Lrp6	A	C	6: 134,436,246 (GRCm39)	C1307G	probably damaging	Het
Lrrc2	A	C	9: 110,808,645 (GRCm39)	H294P	possibly damaging	Het
Mettl25b	A	T	3: 87,834,360 (GRCm39)		probably null	Het
Mon2	A	C	10: 122,878,269 (GRCm39)		probably null	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Mrgprb1	T	C	7: 48,097,070 (GRCm39)	I281V	probably benign	Het
Muc4	A	G	16: 32,569,294 (GRCm39)	E118G	probably damaging	Het
Nefh	T	C	11: 4,893,872 (GRCm39)	D394G	probably damaging	Het
Neurl4	A	G	11: 69,794,047 (GRCm39)	T168A	probably benign	Het
Or10s1	A	G	9: 39,986,211 (GRCm39)	N207D	possibly damaging	Het
Or1j18	T	A	2: 36,624,713 (GRCm39)	C127S	probably damaging	Het
Or51a10	T	C	7: 103,698,845 (GRCm39)	T239A	probably benign	Het
Or5ak4	A	T	2: 85,161,446 (GRCm39)	N265K	probably benign	Het
Oxsr1	A	C	9: 119,123,498 (GRCm39)	M92R	probably damaging	Het
Pde8a	T	C	7: 80,945,516 (GRCm39)		probably null	Het
Pex5l	T	A	3: 33,007,281 (GRCm39)		probably null	Het
Pik3r4	T	A	9: 105,549,984 (GRCm39)	M1025K	probably benign	Het
Plch1	C	T	3: 63,605,903 (GRCm39)	E1325K	probably benign	Het
Plin2	A	T	4: 86,586,669 (GRCm39)	V54E	probably damaging	Het
Prss47	A	T	13: 65,192,887 (GRCm39)	I298N	probably damaging	Het
Prune2	A	G	19: 17,097,546 (GRCm39)	R1017G	probably benign	Het
Psg19	T	A	7: 18,530,911 (GRCm39)	Y81F	possibly damaging	Het
Ptch1	T	G	13: 63,672,773 (GRCm39)	E944A	probably benign	Het
Serpinb1a	T	C	13: 33,034,397 (GRCm39)		probably benign	Het
Sh3pxd2a	A	T	19: 47,266,794 (GRCm39)	V265E	probably damaging	Het
Slc22a17	A	T	14: 55,146,282 (GRCm39)	Y337*	probably null	Het
Slc25a27	A	G	17: 43,968,663 (GRCm39)	V138A	probably benign	Het
Slc4a2	A	G	5: 24,636,314 (GRCm39)	Y220C	probably damaging	Het
Slc66a3	G	A	12: 17,039,840 (GRCm39)	L192F	probably damaging	Het
Stab1	A	T	14: 30,890,392 (GRCm39)	S20T	probably benign	Het
Tcstv2a	A	T	13: 120,725,633 (GRCm39)	Q99L	probably damaging	Het
Thsd1	G	T	8: 22,728,538 (GRCm39)		probably benign	Het
Tmem204	G	A	17: 25,299,566 (GRCm39)		probably benign	Het
Toporsl	T	A	4: 52,612,072 (GRCm39)	F655Y	possibly damaging	Het
Vmn2r98	A	G	17: 19,301,553 (GRCm39)	K852E	unknown	Het
Wdpcp	T	G	11: 21,641,884 (GRCm39)	L174R	probably damaging	Het
Zbbx	G	A	3: 75,019,414 (GRCm39)	P99S	probably damaging	Het
Zfhx4	C	T	3: 5,468,418 (GRCm39)	P2859S	probably benign	Het
Zfp600	A	T	4: 146,133,488 (GRCm39)	R719*	probably null	Het
Zfp697	C	A	3: 98,335,330 (GRCm39)	A365E	unknown	Het
Zfp957	A	C	14: 79,451,053 (GRCm39)	S249A	probably benign	Het

Other mutations in Tom1l1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00595:Tom1l1	APN	11	90,565,566 (GRCm39)	missense	probably damaging	1.00
IGL01995:Tom1l1	APN	11	90,540,687 (GRCm39)	missense	probably damaging	0.96
R0057:Tom1l1	UTSW	11	90,575,975 (GRCm39)	splice site	probably benign
R1557:Tom1l1	UTSW	11	90,547,210 (GRCm39)	missense	possibly damaging	0.92
R1614:Tom1l1	UTSW	11	90,574,080 (GRCm39)	missense	probably damaging	1.00
R1616:Tom1l1	UTSW	11	90,547,177 (GRCm39)	missense	possibly damaging	0.92
R2517:Tom1l1	UTSW	11	90,561,951 (GRCm39)	missense	possibly damaging	0.66
R3745:Tom1l1	UTSW	11	90,548,567 (GRCm39)	missense	probably benign	0.01
R4614:Tom1l1	UTSW	11	90,561,952 (GRCm39)	missense	probably damaging	1.00
R4694:Tom1l1	UTSW	11	90,537,675 (GRCm39)	missense	possibly damaging	0.86
R4755:Tom1l1	UTSW	11	90,575,942 (GRCm39)	missense	probably damaging	1.00
R5397:Tom1l1	UTSW	11	90,552,600 (GRCm39)	missense	probably benign	0.02
R6294:Tom1l1	UTSW	11	90,552,587 (GRCm39)	nonsense	probably null
R6733:Tom1l1	UTSW	11	90,575,886 (GRCm39)	critical splice donor site	probably null
R6911:Tom1l1	UTSW	11	90,534,987 (GRCm39)	splice site	probably null
R7103:Tom1l1	UTSW	11	90,561,907 (GRCm39)	splice site	probably null
R7489:Tom1l1	UTSW	11	90,547,185 (GRCm39)	missense	probably benign	0.00
R7696:Tom1l1	UTSW	11	90,563,741 (GRCm39)	missense	probably benign	0.02
R8244:Tom1l1	UTSW	11	90,548,647 (GRCm39)	missense	probably benign	0.13
R8787:Tom1l1	UTSW	11	90,561,931 (GRCm39)	missense	probably benign	0.00
R9205:Tom1l1	UTSW	11	90,548,644 (GRCm39)	missense	probably damaging	1.00
R9307:Tom1l1	UTSW	11	90,540,648 (GRCm39)	small deletion	probably benign
R9308:Tom1l1	UTSW	11	90,540,648 (GRCm39)	small deletion	probably benign
R9309:Tom1l1	UTSW	11	90,540,648 (GRCm39)	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- TGGCAGATTCCGGCATTCTC -3'
(R):5'- GGAAGCTAGACTGAACCCAC -3'

Sequencing Primer
(F):5'- GCAGATTCCGGCATTCTCACAAG -3'
(R):5'- CATGAAACCATGCAGAAAAGTAGTC -3'

Posted On

2014-10-01