Mutagenetix > Incidental Mutations

Incidental Mutation 'R2136:Cyp2t4'

235814

Institutional Source

Beutler Lab

Gene Symbol

Cyp2t4

Ensembl Gene

ENSMUSG00000078787

Gene Name

cytochrome P450, family 2, subfamily t, polypeptide 4

Synonyms

LOC384724

MMRRC Submission

040139-MU

Accession Numbers

Genbank: NM_001100184; MGI: 2686296

Is this an essential gene?

Probably non essential (E-score: 0.085) question?

Stock #

R2136 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

27153714-27158668 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 27158160 bp

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 391 (F391L)

Ref Sequence

ENSEMBL: ENSMUSP00000104022 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000080058] [ENSMUST00000108382] [ENSMUST00000108385] [ENSMUST00000164093]

Predicted Effect

probably benign
Transcript: ENSMUST00000080058

SMART Domains

Protein: ENSMUSP00000078966
Gene: ENSMUSG00000058709

Domain	Start	End	E-Value	Type
low complexity region	4	18	N/A	INTRINSIC
low complexity region	64	73	N/A	INTRINSIC
Blast:P4Hc	75	136	3e-14	BLAST
low complexity region	154	174	N/A	INTRINSIC
P4Hc	201	387	9.71e-44	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000108382

SMART Domains

Protein: ENSMUSP00000104019
Gene: ENSMUSG00000058709

Domain	Start	End	E-Value	Type
low complexity region	4	18	N/A	INTRINSIC
low complexity region	64	73	N/A	INTRINSIC
Blast:P4Hc	75	136	3e-14	BLAST
low complexity region	154	174	N/A	INTRINSIC
P4Hc	201	387	9.71e-44	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000108385
AA Change: F391L

PolyPhen 2 Score 0.320 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000104022
Gene: ENSMUSG00000078787
AA Change: F391L

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
Pfam:p450	35	492	5.3e-130	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152021

Predicted Effect

probably benign
Transcript: ENSMUST00000164093
AA Change: F399L

PolyPhen 2 Score 0.129 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000126779
Gene: ENSMUSG00000078787
AA Change: F399L

Domain	Start	End	E-Value	Type
transmembrane domain	13	32	N/A	INTRINSIC
Pfam:p450	43	500	2.6e-130	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.6%
20x: 95.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210010C04Rik	A	G	6: 41,035,462	F6S	probably benign	Het
2810474O19Rik	T	A	6: 149,328,822	I1122K	probably benign	Het
A930003A15Rik	T	G	16: 19,883,780		noncoding transcript	Het
Abca5	T	C	11: 110,319,832	T174A	probably benign	Het
Abcg3	G	A	5: 104,966,814	S279L	probably benign	Het
Acap3	T	C	4: 155,896,912	L85P	probably damaging	Het
Adgrl3	A	G	5: 81,512,254	K290R	probably damaging	Het
Ankhd1	A	G	18: 36,647,621	T1909A	probably benign	Het
Asap1	T	C	15: 64,110,959	D832G	probably damaging	Het
Atp6v0a2	T	A	5: 124,718,488	L702Q	possibly damaging	Het
Bsn	A	G	9: 108,113,231	V1774A	probably damaging	Het
Cd209e	T	C	8: 3,853,248	E48G	probably benign	Het
Cdadc1	T	C	14: 59,568,044		probably null	Het
Cfap65	C	CA	1: 74,917,273		probably null	Het
Cln3	A	C	7: 126,582,799	S30R	probably benign	Het
Cluap1	C	T	16: 3,933,772	R332W	probably damaging	Het
Crb1	A	T	1: 139,337,425	V85E	probably benign	Het
Crocc	G	A	4: 141,032,954	R789W	probably damaging	Het
Cwh43	A	G	5: 73,415,054	I212V	probably benign	Het
Dhx35	G	T	2: 158,831,861	R404L	probably damaging	Het
Disp1	A	G	1: 183,088,378	L826S	probably damaging	Het
Dync2h1	T	A	9: 7,122,772	E2061D	probably damaging	Het
Ep300	T	A	15: 81,640,447	Y1393N	unknown	Het
Fap	C	T	2: 62,524,207	G446D	possibly damaging	Het
Fat3	A	G	9: 16,377,051	I392T	probably benign	Het
Fpr-rs4	CAGGAA	CA	17: 18,022,334		probably null	Het
Glipr1l1	T	C	10: 112,060,476	V56A	probably damaging	Het
Grsf1	A	G	5: 88,672,658	V7A	probably benign	Het
Hmcn1	G	A	1: 150,633,659	A3646V	probably damaging	Het
Ipo9	A	T	1: 135,394,285	I569N	probably damaging	Het
Irs1	G	T	1: 82,290,042	P151Q	probably damaging	Het
Kalrn	T	C	16: 34,307,724	D491G	possibly damaging	Het
Kctd7	T	C	5: 130,152,366	L210P	probably damaging	Het
Lifr	C	A	15: 7,181,857	D625E	possibly damaging	Het
Lrguk	T	C	6: 34,043,519	V201A	probably benign	Het
Mark1	A	G	1: 184,919,573	V135A	probably damaging	Het
Mical2	T	A	7: 112,271,515	D70E	possibly damaging	Het
Mrc1	T	C	2: 14,270,189	Y434H	probably damaging	Het
Myh10	C	A	11: 68,804,714	Q1556K	probably damaging	Het
Nav1	G	A	1: 135,454,436	T1400I	probably null	Het
Olfr1173	T	C	2: 88,274,240	K270E	probably damaging	Het
Olfr1178	T	A	2: 88,391,319	I24N	probably benign	Het
Olfr1289	T	C	2: 111,483,616	V62A	probably damaging	Het
Olfr13	A	G	6: 43,174,501	K172E	probably benign	Het
Olfr142	A	C	2: 90,252,253	V245G	probably damaging	Het
Olfr339	A	G	2: 36,421,938	D180G	probably damaging	Het
Olfr513	G	A	7: 108,755,223	M122I	possibly damaging	Het
Osmr	T	A	15: 6,852,462	Q67L	probably damaging	Het
Pan2	T	G	10: 128,313,637	V522G	possibly damaging	Het
Pard3	T	G	8: 127,376,885		probably null	Het
Pcdhgc5	G	T	18: 37,820,113	A147S	possibly damaging	Het
Pcsk9	T	C	4: 106,446,770	I506V	probably benign	Het
Polr3d	GCCCCC	GCCCC	14: 70,443,047		probably null	Het
Prdm4	G	A	10: 85,893,351	R731*	probably null	Het
Prdx6b	T	A	2: 80,293,163	D105E	probably damaging	Het
Rab42	A	G	4: 132,302,479	L144P	probably damaging	Het
Ralbp1	T	A	17: 65,864,666	K104M	probably damaging	Het
Rrp12	A	G	19: 41,892,599	V131A	probably damaging	Het
Sbno1	C	T	5: 124,387,534		probably null	Het
Sbno2	A	T	10: 80,062,693	I645N	probably damaging	Het
Scfd2	T	C	5: 74,206,367	K624R	probably benign	Het
Sgk2	C	A	2: 162,999,179		probably null	Het
Sirt4	A	G	5: 115,479,701	S299P	probably benign	Het
Slit2	C	T	5: 48,304,225	A1521V	probably benign	Het
Socs7	T	G	11: 97,373,107	V275G	possibly damaging	Het
Spink11	G	A	18: 44,190,487	P102S	probably benign	Het
Tacc3	A	G	5: 33,671,404	N534D	probably damaging	Het
Tas2r115	T	C	6: 132,737,346	Y214C	probably damaging	Het
Tcaf1	A	T	6: 42,673,520	M875K	probably benign	Het
Ttc22	T	A	4: 106,622,672	L41Q	possibly damaging	Het
Ttc37	T	C	13: 76,173,354	S1322P	possibly damaging	Het
Vasn	T	A	16: 4,649,795	C535*	probably null	Het
Vcan	T	A	13: 89,689,737	I2563F	probably damaging	Het
Vmn2r63	T	G	7: 42,926,873	Q505H	probably damaging	Het
Vmn2r65	T	G	7: 84,943,573	Q475H	probably damaging	Het
Zbtb43	T	C	2: 33,454,520	Y231C	probably damaging	Het
Zfp292	A	G	4: 34,810,266	V931A	probably benign	Het

Other mutations in Cyp2t4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Cyp2t4	APN	7	27155298	missense	probably benign	0.00
IGL00706:Cyp2t4	APN	7	27155158	missense	probably benign	0.01
IGL02926:Cyp2t4	APN	7	27157803	missense	probably damaging	1.00
R0560:Cyp2t4	UTSW	7	27158511	missense	probably damaging	0.99
R0632:Cyp2t4	UTSW	7	27158246	missense	possibly damaging	0.82
R0788:Cyp2t4	UTSW	7	27155163	missense	probably null
R1353:Cyp2t4	UTSW	7	27156630	missense	probably benign	0.03
R1652:Cyp2t4	UTSW	7	27157390	missense	possibly damaging	0.48
R1838:Cyp2t4	UTSW	7	27158416	missense	possibly damaging	0.92
R1997:Cyp2t4	UTSW	7	27157613	critical splice donor site	probably null
R2963:Cyp2t4	UTSW	7	27155274	missense	possibly damaging	0.86
R6239:Cyp2t4	UTSW	7	27157475	missense	possibly damaging	0.73
R6634:Cyp2t4	UTSW	7	27155788	nonsense	probably null
R7251:Cyp2t4	UTSW	7	27157719	missense	possibly damaging	0.72
R7348:Cyp2t4	UTSW	7	27157251	missense	probably benign	0.01
R7436:Cyp2t4	UTSW	7	27158243	missense	probably damaging	0.99
R8350:Cyp2t4	UTSW	7	27157381	missense	possibly damaging	0.51
R8352:Cyp2t4	UTSW	7	27157737	missense	probably benign	0.04
R8405:Cyp2t4	UTSW	7	27157469	critical splice acceptor site	probably null
R8450:Cyp2t4	UTSW	7	27157381	missense	possibly damaging	0.51
R8452:Cyp2t4	UTSW	7	27157737	missense	probably benign	0.04
Z1088:Cyp2t4	UTSW	7	27157746	missense	probably damaging	1.00
Z1177:Cyp2t4	UTSW	7	27158240	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGAGGGCTAACACAACCAGTAC -3'
(R):5'- CCGTCAGGAAGAGGAAGATCTC -3'

Sequencing Primer
(F):5'- AGTACCTGGGGCTCCCTC -3'
(R):5'- TGTGGGATGAGCAAGCCC -3'

Posted On

2014-10-01