Mutagenetix > Incidental Mutation

Incidental Mutation 'R2139:Nyap2'

236016

Institutional Source

Beutler Lab

Gene Symbol

Nyap2

Ensembl Gene

ENSMUSG00000054976

Gene Name

neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2

Synonyms

Jr6, 9430031J16Rik

MMRRC Submission

040142-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2139 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

81054667-81319479 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 81218983 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 335 (D335G)

Ref Sequence

ENSEMBL: ENSMUSP00000065468 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068275] [ENSMUST00000113494] [ENSMUST00000123285] [ENSMUST00000123720] [ENSMUST00000137862]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000068275
AA Change: D335G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000065468
Gene: ENSMUSG00000054976
AA Change: D335G

Domain	Start	End	E-Value	Type
Pfam:NYAP_N	44	447	1.5e-139	PFAM
Pfam:NYAP_C	496	709	5.2e-41	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000113494
AA Change: D303G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000109122
Gene: ENSMUSG00000054976
AA Change: D303G

Domain	Start	End	E-Value	Type
Pfam:NYAP_N	43	416	1.4e-134	PFAM
Pfam:NYAP_C	420	647	7.7e-17	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000123285
AA Change: D303G

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000122935
Gene: ENSMUSG00000054976
AA Change: D303G

Domain	Start	End	E-Value	Type
Pfam:NYAP_N	43	416	1.9e-134	PFAM
Pfam:NYAP_C	420	716	6.3e-46	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000123720
AA Change: D335G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000117661
Gene: ENSMUSG00000054976
AA Change: D335G

Domain	Start	End	E-Value	Type
Pfam:NYAP_N	43	448	1.9e-127	PFAM
low complexity region	489	510	N/A	INTRINSIC
low complexity region	549	564	N/A	INTRINSIC
low complexity region	649	662	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000137862
AA Change: D303G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000120767
Gene: ENSMUSG00000054976
AA Change: D303G

Domain	Start	End	E-Value	Type
Pfam:NYAP_N	43	416	1.4e-134	PFAM
Pfam:NYAP_C	420	647	7.7e-17	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Triple KO of Nyap1, Nyap2 and Myo16 results in decreased brain weight and cortex and striatum size and reduced neurite length in cortical neurons. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931429L15Rik	A	T	9: 46,215,593 (GRCm39)	F318I	probably damaging	Het
Bfsp2	T	C	9: 103,327,074 (GRCm39)	K221R	probably benign	Het
Cacna1b	A	C	2: 24,569,485 (GRCm39)	M813R	probably benign	Het
Chaf1a	T	C	17: 56,372,226 (GRCm39)	L798P	probably damaging	Het
Chd8	G	A	14: 52,474,428 (GRCm39)	T201I	probably benign	Het
Col23a1	T	C	11: 51,464,861 (GRCm39)	S436P	probably benign	Het
Cubn	T	C	2: 13,340,978 (GRCm39)	I2248V	probably benign	Het
Cyp4f39	A	G	17: 32,710,163 (GRCm39)	I440M	probably benign	Het
Dhcr24	G	T	4: 106,429,499 (GRCm39)	E191*	probably null	Het
Dlg5	T	C	14: 24,220,612 (GRCm39)	D522G	probably damaging	Het
Dnaja4	A	T	9: 54,616,506 (GRCm39)	M170L	probably benign	Het
Dop1b	T	C	16: 93,567,895 (GRCm39)	S1441P	possibly damaging	Het
Efcab3	C	T	11: 104,642,737 (GRCm39)	T1120I	possibly damaging	Het
Egr2	T	A	10: 67,376,702 (GRCm39)	S383T	probably damaging	Het
Elovl1	A	G	4: 118,288,303 (GRCm39)	D94G	probably damaging	Het
Erbb4	A	G	1: 68,385,788 (GRCm39)	V267A	probably damaging	Het
Esp38	T	A	17: 40,264,275 (GRCm39)	I11N	probably damaging	Het
Esrrb	T	C	12: 86,468,740 (GRCm39)		probably null	Het
Fbxo24	A	T	5: 137,611,327 (GRCm39)	S488T	probably damaging	Het
Fgfr1	T	G	8: 26,060,882 (GRCm39)	V618G	probably damaging	Het
Gak	C	T	5: 108,754,743 (GRCm39)		probably null	Het
Gpr61	A	T	3: 108,058,077 (GRCm39)	C195S	probably damaging	Het
Greb1l	A	C	18: 10,555,011 (GRCm39)	N1686H	probably damaging	Het
Hapln4	T	C	8: 70,540,788 (GRCm39)	F274L	probably benign	Het
Hoxc10	A	T	15: 102,875,912 (GRCm39)	Q207L	probably benign	Het
Hspa12a	A	G	19: 58,787,914 (GRCm39)	V636A	probably benign	Het
Il22ra2	T	A	10: 19,508,618 (GRCm39)	F215L	probably benign	Het
Il36b	A	G	2: 24,044,672 (GRCm39)	N24S	probably benign	Het
Kank1	G	A	19: 25,389,117 (GRCm39)	G930D	probably benign	Het
Kif13a	T	C	13: 46,905,945 (GRCm39)	D666G	possibly damaging	Het
Krt86	A	T	15: 101,371,639 (GRCm39)	I70F	probably benign	Het
Lgi4	A	T	7: 30,762,548 (GRCm39)	I112F	probably damaging	Het
Lrrc8c	T	G	5: 105,754,558 (GRCm39)	I111S	probably damaging	Het
Ltbp2	T	C	12: 84,862,753 (GRCm39)	N600S	probably damaging	Het
Mbd3l2	A	T	9: 18,356,254 (GRCm39)	D193V	probably damaging	Het
Mroh5	T	A	15: 73,661,940 (GRCm39)	D417V	probably damaging	Het
Ms4a18	A	T	19: 10,974,695 (GRCm39)	V332D	possibly damaging	Het
Mtarc1	G	A	1: 184,527,632 (GRCm39)	T276I	probably benign	Het
Muc4	T	A	16: 32,581,599 (GRCm39)	I2488N	unknown	Het
Myrf	C	G	19: 10,193,831 (GRCm39)	A532P	probably damaging	Het
Nav3	T	C	10: 109,688,996 (GRCm39)	N427S	probably benign	Het
Neb	T	C	2: 52,102,600 (GRCm39)	S4315G	probably damaging	Het
Olfm4	T	C	14: 80,251,755 (GRCm39)	L225P	probably benign	Het
Or10z1	A	T	1: 174,078,302 (GRCm39)		probably null	Het
Or4c104	T	A	2: 88,586,437 (GRCm39)	N194I	probably damaging	Het
Or51ac3	A	T	7: 103,213,961 (GRCm39)	I175K	possibly damaging	Het
Or8s2	T	C	15: 98,276,145 (GRCm39)	N282S	probably damaging	Het
Pcdhac2	T	G	18: 37,279,139 (GRCm39)	Y706*	probably null	Het
Pgbd1	A	G	13: 21,607,190 (GRCm39)	S335P	probably damaging	Het
Pkhd1l1	A	C	15: 44,393,214 (GRCm39)	I1850L	possibly damaging	Het
Pogz	T	C	3: 94,778,318 (GRCm39)	V304A	possibly damaging	Het
Rap1a	T	C	3: 105,646,856 (GRCm39)	I100V	probably damaging	Het
Slc4a4	A	T	5: 89,194,123 (GRCm39)	K201M	probably damaging	Het
Slc6a1	T	C	6: 114,281,022 (GRCm39)	F8S	possibly damaging	Het
St18	T	G	1: 6,880,839 (GRCm39)	M444R	possibly damaging	Het
Syna	G	T	5: 134,588,106 (GRCm39)	S281*	probably null	Het
Tgm1	A	G	14: 55,947,000 (GRCm39)	V336A	probably damaging	Het
Tle6	G	T	10: 81,429,868 (GRCm39)	T400K	probably damaging	Het
Tmem181a	T	C	17: 6,348,481 (GRCm39)	W328R	probably damaging	Het
Trim7	T	C	11: 48,729,721 (GRCm39)	F193L	probably benign	Het
Txndc16	A	T	14: 45,410,046 (GRCm39)	M178K	probably damaging	Het
Unc80	C	T	1: 66,560,740 (GRCm39)	H823Y	possibly damaging	Het
Vmn1r74	A	G	7: 11,581,243 (GRCm39)	Y181C	probably damaging	Het
Vmn2r56	T	A	7: 12,446,890 (GRCm39)	K421*	probably null	Het
Vwa7	T	G	17: 35,242,406 (GRCm39)	S503R	probably benign	Het
Washc5	G	A	15: 59,221,991 (GRCm39)	T135M	probably damaging	Het
Wdr6	T	C	9: 108,451,322 (GRCm39)	I854V	probably benign	Het
Zfp507	A	G	7: 35,493,148 (GRCm39)	C632R	probably damaging	Het

Other mutations in Nyap2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00466:Nyap2	APN	1	81,169,695 (GRCm39)	missense	probably damaging	0.99
IGL01660:Nyap2	APN	1	81,169,642 (GRCm39)	missense	probably damaging	0.99
IGL02379:Nyap2	APN	1	81,065,147 (GRCm39)	missense	probably damaging	1.00
IGL02652:Nyap2	APN	1	81,219,435 (GRCm39)	missense	probably damaging	1.00
IGL03217:Nyap2	APN	1	81,065,039 (GRCm39)	missense	probably damaging	1.00
IGL03410:Nyap2	APN	1	81,219,156 (GRCm39)	missense	possibly damaging	0.95
R0001:Nyap2	UTSW	1	81,169,822 (GRCm39)	missense	probably benign	0.03
R0014:Nyap2	UTSW	1	81,219,666 (GRCm39)	missense	probably damaging	0.99
R0506:Nyap2	UTSW	1	81,065,029 (GRCm39)	missense	probably damaging	0.99
R1512:Nyap2	UTSW	1	81,219,566 (GRCm39)	missense	probably damaging	0.98
R1914:Nyap2	UTSW	1	81,169,602 (GRCm39)	missense	probably damaging	1.00
R2018:Nyap2	UTSW	1	81,169,587 (GRCm39)	missense	probably benign	0.03
R2078:Nyap2	UTSW	1	81,169,696 (GRCm39)	missense	probably damaging	1.00
R2915:Nyap2	UTSW	1	81,065,188 (GRCm39)	nonsense	probably null
R2972:Nyap2	UTSW	1	81,169,485 (GRCm39)	nonsense	probably null
R2974:Nyap2	UTSW	1	81,169,485 (GRCm39)	nonsense	probably null
R3076:Nyap2	UTSW	1	81,219,686 (GRCm39)	critical splice donor site	probably null
R4066:Nyap2	UTSW	1	81,219,550 (GRCm39)	missense	probably damaging	1.00
R4134:Nyap2	UTSW	1	81,218,908 (GRCm39)	missense	probably damaging	0.99
R4298:Nyap2	UTSW	1	81,218,811 (GRCm39)	missense	probably damaging	1.00
R4652:Nyap2	UTSW	1	81,314,444 (GRCm39)	missense	probably damaging	0.98
R4788:Nyap2	UTSW	1	81,247,112 (GRCm39)	missense	probably benign
R4816:Nyap2	UTSW	1	81,219,028 (GRCm39)	missense	probably damaging	1.00
R5211:Nyap2	UTSW	1	81,064,991 (GRCm39)	start codon destroyed	probably null	0.77
R5327:Nyap2	UTSW	1	81,169,756 (GRCm39)	missense	possibly damaging	0.77
R5453:Nyap2	UTSW	1	81,169,857 (GRCm39)	missense	probably benign	0.01
R7337:Nyap2	UTSW	1	81,314,230 (GRCm39)	missense	possibly damaging	0.50
R7558:Nyap2	UTSW	1	81,247,088 (GRCm39)	missense	probably benign	0.01
R8078:Nyap2	UTSW	1	81,218,772 (GRCm39)	missense	possibly damaging	0.95
R8231:Nyap2	UTSW	1	81,169,846 (GRCm39)	missense	probably benign
R8482:Nyap2	UTSW	1	81,219,352 (GRCm39)	missense	probably damaging	1.00
R9047:Nyap2	UTSW	1	81,275,803 (GRCm39)	missense	possibly damaging	0.95
R9056:Nyap2	UTSW	1	81,314,314 (GRCm39)	missense	probably benign	0.15
R9193:Nyap2	UTSW	1	81,275,712 (GRCm39)	missense	probably damaging	0.97
R9210:Nyap2	UTSW	1	81,219,042 (GRCm39)	missense	probably damaging	1.00
R9260:Nyap2	UTSW	1	81,064,835 (GRCm39)	intron	probably benign
X0067:Nyap2	UTSW	1	81,247,034 (GRCm39)	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- AGCCTGTGTACATCGAGATG -3'
(R):5'- TGGCTGTTTCATGTAAGACACG -3'

Sequencing Primer
(F):5'- CATCGAGATGGTGGGGAACATCC -3'
(R):5'- ACAGGAAGCTTTGTGACCTC -3'

Posted On

2014-10-01