Incidental Mutation 'R2142:Ipo9'
ID 236319
Institutional Source Beutler Lab
Gene Symbol Ipo9
Ensembl Gene ENSMUSG00000041879
Gene Name importin 9
Synonyms 0710008K06Rik, Imp9
MMRRC Submission 040145-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R2142 (G1)
Quality Score 214
Status Not validated
Chromosome 1
Chromosomal Location 135310050-135358237 bp(-) (GRCm39)
Type of Mutation small insertion (1 aa in frame mutation)
DNA Base Change (assembly) TCC to TCCGCC at 135314013 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s): [ENSMUST00000041023] [ENSMUST00000161032] [ENSMUST00000161189]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000041023
SMART Domains Protein: ENSMUSP00000036093
Gene: ENSMUSG00000041879

DomainStartEndE-ValueType
low complexity region 2 10 N/A INTRINSIC
IBN_N 43 119 3.83e-7 SMART
low complexity region 911 922 N/A INTRINSIC
low complexity region 978 990 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159089
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159487
Predicted Effect probably benign
Transcript: ENSMUST00000161032
SMART Domains Protein: ENSMUSP00000124779
Gene: ENSMUSG00000041879

DomainStartEndE-ValueType
low complexity region 2 10 N/A INTRINSIC
IBN_N 43 119 3.83e-7 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000161189
SMART Domains Protein: ENSMUSP00000124492
Gene: ENSMUSG00000041879

DomainStartEndE-ValueType
low complexity region 2 10 N/A INTRINSIC
SCOP:d1i6la_ 21 52 4e-3 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161258
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161750
Predicted Effect probably benign
Transcript: ENSMUST00000161934
SMART Domains Protein: ENSMUSP00000124210
Gene: ENSMUSG00000041879

DomainStartEndE-ValueType
low complexity region 81 92 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000162858
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.2%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E7. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 105 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aagab T A 9: 63,523,957 (GRCm39) probably null Het
Adgrb3 G T 1: 25,107,290 (GRCm39) P640T probably damaging Het
Adgrf4 C T 17: 42,977,789 (GRCm39) R518Q possibly damaging Het
Afdn A G 17: 14,030,695 (GRCm39) E202G probably damaging Het
Alkbh2 C T 5: 114,263,777 (GRCm39) V77I probably benign Het
Angpt2 T C 8: 18,764,156 (GRCm39) T129A probably benign Het
Atp6v0a4 T A 6: 38,059,871 (GRCm39) K236* probably null Het
Baz1b G A 5: 135,246,129 (GRCm39) R526H probably damaging Het
Bltp3b A G 10: 89,647,910 (GRCm39) D207G probably damaging Het
Bscl2 T C 19: 8,822,684 (GRCm39) probably null Het
Btnl9 G T 11: 49,061,453 (GRCm39) probably null Het
Cd55 C T 1: 130,377,160 (GRCm39) V333I probably benign Het
Cdh8 C A 8: 99,838,325 (GRCm39) C505F probably damaging Het
Cep112 A G 11: 108,497,151 (GRCm39) E697G probably damaging Het
Ces1c T A 8: 93,857,468 (GRCm39) I38F probably benign Het
Cfhr2 T G 1: 139,758,893 (GRCm39) R52S probably benign Het
Clcn6 A G 4: 148,108,594 (GRCm39) F145S possibly damaging Het
Cnksr1 A G 4: 133,956,939 (GRCm39) Y488H probably damaging Het
Cntrl CAGAG CAG 2: 35,012,818 (GRCm39) probably null Het
Col25a1 A G 3: 130,363,965 (GRCm39) H546R probably damaging Het
Crot A T 5: 9,037,780 (GRCm39) Y179N possibly damaging Het
Dck T C 5: 88,920,582 (GRCm39) C101R probably damaging Het
Ddb1 T C 19: 10,596,490 (GRCm39) probably null Het
Dnah7b T A 1: 46,307,830 (GRCm39) M3048K probably damaging Het
Dsel T C 1: 111,787,187 (GRCm39) N1116S probably benign Het
Efnb1 A G X: 98,191,123 (GRCm39) Y343C probably damaging Het
Elf2 A G 3: 51,163,861 (GRCm39) V496A probably damaging Het
Esco1 A G 18: 10,574,873 (GRCm39) probably null Het
Fbn1 T G 2: 125,254,628 (GRCm39) T212P possibly damaging Het
Fuca2 A G 10: 13,381,609 (GRCm39) Y174C probably damaging Het
Gabarap C T 11: 69,882,515 (GRCm39) probably benign Het
Gdf2 A G 14: 33,667,198 (GRCm39) T307A probably benign Het
Gemin4 G C 11: 76,101,876 (GRCm39) P962A probably damaging Het
Glyatl3 T C 17: 41,221,975 (GRCm39) D93G probably benign Het
Gm266 C T 12: 111,451,615 (GRCm39) R197K possibly damaging Het
Gns G A 10: 121,228,683 (GRCm39) R498H probably damaging Het
Gprasp1 G A X: 134,702,791 (GRCm39) E995K possibly damaging Het
Grk6 T C 13: 55,602,177 (GRCm39) W335R probably damaging Het
Helz2 T C 2: 180,873,173 (GRCm39) E2379G probably benign Het
Hmx2 A T 7: 131,157,588 (GRCm39) D234V probably damaging Het
Ift20 G A 11: 78,430,860 (GRCm39) E68K probably damaging Het
Itpkc A G 7: 26,919,075 (GRCm39) V397A possibly damaging Het
Jarid2 T A 13: 45,059,752 (GRCm39) N661K probably damaging Het
Kat5 T A 19: 5,655,713 (GRCm39) probably null Het
Kctd16 A G 18: 40,392,231 (GRCm39) E273G possibly damaging Het
Kdr T C 5: 76,129,083 (GRCm39) T188A possibly damaging Het
Kif18a T A 2: 109,163,848 (GRCm39) N732K probably benign Het
Laptm4b G T 15: 34,238,478 (GRCm39) M3I probably benign Het
Macf1 C T 4: 123,248,895 (GRCm39) C7210Y probably damaging Het
Man1a T C 10: 53,811,094 (GRCm39) N338S probably damaging Het
Mical3 A T 6: 121,008,095 (GRCm39) probably null Het
Micall1 T C 15: 79,014,995 (GRCm39) Y751H probably damaging Het
Mki67 A G 7: 135,297,321 (GRCm39) I2571T possibly damaging Het
Mx2 G A 16: 97,339,903 (GRCm39) E20K probably benign Het
Myh2 A G 11: 67,080,158 (GRCm39) E1124G probably damaging Het
Myo10 A G 15: 25,714,194 (GRCm39) E87G probably benign Het
Nat10 T C 2: 103,561,648 (GRCm39) probably null Het
Nipa1 C A 7: 55,647,259 (GRCm39) probably null Het
Nrbp1 A G 5: 31,405,273 (GRCm39) E287G possibly damaging Het
Nup188 T A 2: 30,226,718 (GRCm39) I1165N possibly damaging Het
Obsl1 G A 1: 75,486,756 (GRCm38) T1764M probably benign Het
Optc A T 1: 133,831,534 (GRCm39) probably null Het
Or14j4 T G 17: 37,921,362 (GRCm39) E93D probably benign Het
Or2y13 A G 11: 49,414,666 (GRCm39) I39V probably benign Het
Or4a68 C T 2: 89,269,927 (GRCm39) R232H probably benign Het
Or4k48 C A 2: 111,475,566 (GRCm39) V259L probably benign Het
Or51a10 C T 7: 103,699,507 (GRCm39) G18D probably damaging Het
Or6c1b A G 10: 129,273,616 (GRCm39) K312E probably benign Het
Or9g3 C T 2: 85,590,021 (GRCm39) R233H probably benign Het
Panx3 G C 9: 37,577,969 (GRCm39) S87W probably damaging Het
Parp8 T A 13: 117,031,422 (GRCm39) D430V probably benign Het
Pcdhb11 A G 18: 37,555,176 (GRCm39) N169D probably benign Het
Pdzd2 C A 15: 12,406,645 (GRCm39) G605V probably damaging Het
Phkg2 G A 7: 127,181,386 (GRCm39) probably null Het
Pkhd1 T A 1: 20,594,119 (GRCm39) K1331N probably benign Het
Plcb4 G A 2: 135,818,019 (GRCm39) V762M probably damaging Het
Plec T C 15: 76,067,374 (GRCm39) T1331A probably benign Het
Pot1a T C 6: 25,750,043 (GRCm39) probably null Het
Prb1a T A 6: 132,184,166 (GRCm39) Q489L unknown Het
Prelp C T 1: 133,842,869 (GRCm39) R92K probably benign Het
Psme4 A G 11: 30,770,998 (GRCm39) Y782C possibly damaging Het
Rab11fip5 T C 6: 85,314,210 (GRCm39) probably null Het
Ren1 C G 1: 133,278,516 (GRCm39) probably null Het
Rit2 A G 18: 31,286,766 (GRCm39) F140L probably benign Het
Ro60 T C 1: 143,635,772 (GRCm39) D458G probably benign Het
Rorc G A 3: 94,296,833 (GRCm39) R271Q probably benign Het
Sall3 A T 18: 81,013,046 (GRCm39) M1130K probably damaging Het
Sart3 T C 5: 113,902,154 (GRCm39) E141G probably damaging Het
Serpina9 T C 12: 103,974,568 (GRCm39) D195G probably benign Het
Slitrk6 T G 14: 110,988,226 (GRCm39) T494P probably benign Het
Tars3 A T 7: 65,308,645 (GRCm39) I272L probably benign Het
Tas2r115 T C 6: 132,714,321 (GRCm39) K210R probably benign Het
Tdpoz3 C T 3: 93,734,206 (GRCm39) H294Y probably benign Het
Tesl1 T A X: 23,773,549 (GRCm39) V350E probably benign Het
Tigd4 A G 3: 84,501,670 (GRCm39) T196A possibly damaging Het
Treh G A 9: 44,592,438 (GRCm39) M54I probably damaging Het
Ttn C T 2: 76,643,683 (GRCm39) G11436R probably damaging Het
Ubap1 C T 4: 41,379,257 (GRCm39) A157V probably damaging Het
Ubr4 C T 4: 139,204,518 (GRCm39) T4810M probably damaging Het
Xrcc6 T A 15: 81,907,178 (GRCm39) F167I probably damaging Het
Zfp281 GCGGCAGCTCCGGCAGC GCGGCAGCTCCGGCAGCTCCGGCAGC 1: 136,553,091 (GRCm39) probably benign Het
Zfp473 T C 7: 44,382,501 (GRCm39) T610A possibly damaging Het
Zfp606 T C 7: 12,213,653 (GRCm39) I4T probably damaging Het
Zfp638 T A 6: 83,963,578 (GRCm39) N1918K probably damaging Het
Zfp65 G T 13: 67,856,311 (GRCm39) H333N probably damaging Het
Other mutations in Ipo9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00896:Ipo9 APN 1 135,327,797 (GRCm39) missense probably damaging 1.00
IGL01611:Ipo9 APN 1 135,314,431 (GRCm39) missense possibly damaging 0.76
IGL01941:Ipo9 APN 1 135,335,811 (GRCm39) missense possibly damaging 0.95
IGL01944:Ipo9 APN 1 135,333,624 (GRCm39) missense probably damaging 0.98
IGL01959:Ipo9 APN 1 135,348,093 (GRCm39) critical splice acceptor site probably null
IGL02649:Ipo9 APN 1 135,313,672 (GRCm39) missense possibly damaging 0.92
IGL02697:Ipo9 APN 1 135,318,314 (GRCm39) missense probably benign 0.00
IGL03286:Ipo9 APN 1 135,334,816 (GRCm39) intron probably benign
FR4304:Ipo9 UTSW 1 135,314,017 (GRCm39) nonsense probably null
FR4304:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
FR4340:Ipo9 UTSW 1 135,314,009 (GRCm39) small insertion probably benign
FR4340:Ipo9 UTSW 1 135,314,007 (GRCm39) small insertion probably benign
FR4548:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
FR4589:Ipo9 UTSW 1 135,314,019 (GRCm39) small insertion probably benign
FR4589:Ipo9 UTSW 1 135,314,004 (GRCm39) small insertion probably benign
FR4976:Ipo9 UTSW 1 135,314,019 (GRCm39) small insertion probably benign
R0111:Ipo9 UTSW 1 135,333,662 (GRCm39) missense probably damaging 0.97
R0238:Ipo9 UTSW 1 135,332,074 (GRCm39) splice site probably benign
R0239:Ipo9 UTSW 1 135,332,074 (GRCm39) splice site probably benign
R0279:Ipo9 UTSW 1 135,348,101 (GRCm39) intron probably benign
R0704:Ipo9 UTSW 1 135,314,006 (GRCm39) small deletion probably benign
R1070:Ipo9 UTSW 1 135,334,281 (GRCm39) missense possibly damaging 0.89
R1282:Ipo9 UTSW 1 135,330,030 (GRCm39) missense possibly damaging 0.48
R1467:Ipo9 UTSW 1 135,334,281 (GRCm39) missense possibly damaging 0.89
R1467:Ipo9 UTSW 1 135,334,281 (GRCm39) missense possibly damaging 0.89
R1728:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1728:Ipo9 UTSW 1 135,314,009 (GRCm39) small insertion probably benign
R1728:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1729:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1729:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1730:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1730:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1739:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1739:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1762:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1762:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1783:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1783:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1784:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1784:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1785:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1785:Ipo9 UTSW 1 135,314,019 (GRCm39) small insertion probably benign
R1785:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1899:Ipo9 UTSW 1 135,327,884 (GRCm39) missense probably damaging 0.99
R2049:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2049:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2130:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2130:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2131:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2131:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2133:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2133:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
R2133:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2136:Ipo9 UTSW 1 135,322,023 (GRCm39) missense probably damaging 0.98
R2141:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2141:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2142:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2142:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2142:Ipo9 UTSW 1 135,314,020 (GRCm39) small insertion probably benign
R2356:Ipo9 UTSW 1 135,334,555 (GRCm39) missense probably benign 0.00
R2923:Ipo9 UTSW 1 135,327,867 (GRCm39) missense probably benign 0.25
R3161:Ipo9 UTSW 1 135,337,214 (GRCm39) missense probably benign 0.43
R3162:Ipo9 UTSW 1 135,337,214 (GRCm39) missense probably benign 0.43
R3162:Ipo9 UTSW 1 135,337,214 (GRCm39) missense probably benign 0.43
R4086:Ipo9 UTSW 1 135,316,428 (GRCm39) unclassified probably benign
R4679:Ipo9 UTSW 1 135,321,907 (GRCm39) missense probably benign
R4816:Ipo9 UTSW 1 135,334,288 (GRCm39) missense probably benign 0.21
R4956:Ipo9 UTSW 1 135,331,960 (GRCm39) critical splice donor site probably null
R5052:Ipo9 UTSW 1 135,316,349 (GRCm39) splice site probably null
R5055:Ipo9 UTSW 1 135,330,097 (GRCm39) nonsense probably null
R5230:Ipo9 UTSW 1 135,347,808 (GRCm39) missense probably damaging 1.00
R5240:Ipo9 UTSW 1 135,317,344 (GRCm39) unclassified probably benign
R5257:Ipo9 UTSW 1 135,313,173 (GRCm39) missense probably damaging 1.00
R5340:Ipo9 UTSW 1 135,313,170 (GRCm39) missense probably benign 0.00
R5560:Ipo9 UTSW 1 135,329,983 (GRCm39) missense probably damaging 0.99
R5602:Ipo9 UTSW 1 135,329,983 (GRCm39) missense probably damaging 0.99
R5604:Ipo9 UTSW 1 135,329,983 (GRCm39) missense probably damaging 0.99
R5654:Ipo9 UTSW 1 135,313,210 (GRCm39) nonsense probably null
R6018:Ipo9 UTSW 1 135,318,274 (GRCm39) critical splice donor site probably null
R6128:Ipo9 UTSW 1 135,318,311 (GRCm39) missense possibly damaging 0.90
R6841:Ipo9 UTSW 1 135,314,046 (GRCm39) missense probably benign
R7230:Ipo9 UTSW 1 135,334,496 (GRCm39) critical splice donor site probably benign
R7255:Ipo9 UTSW 1 135,313,726 (GRCm39) missense probably benign 0.01
R7383:Ipo9 UTSW 1 135,316,411 (GRCm39) missense probably damaging 1.00
R7844:Ipo9 UTSW 1 135,322,062 (GRCm39) missense probably benign 0.00
R7889:Ipo9 UTSW 1 135,334,591 (GRCm39) missense probably benign 0.22
R8125:Ipo9 UTSW 1 135,331,078 (GRCm39) missense probably benign 0.00
R8823:Ipo9 UTSW 1 135,347,077 (GRCm39) missense probably damaging 0.99
R8889:Ipo9 UTSW 1 135,314,544 (GRCm39) missense possibly damaging 0.50
R8892:Ipo9 UTSW 1 135,314,544 (GRCm39) missense possibly damaging 0.50
R8906:Ipo9 UTSW 1 135,321,951 (GRCm39) missense probably damaging 1.00
R8926:Ipo9 UTSW 1 135,313,952 (GRCm39) splice site probably benign
R9084:Ipo9 UTSW 1 135,334,563 (GRCm39) missense probably benign 0.01
R9215:Ipo9 UTSW 1 135,347,033 (GRCm39) missense probably benign 0.05
R9756:Ipo9 UTSW 1 135,314,057 (GRCm39) missense probably benign 0.00
Y5405:Ipo9 UTSW 1 135,314,022 (GRCm39) small insertion probably benign
Y5405:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
Y5405:Ipo9 UTSW 1 135,314,007 (GRCm39) small insertion probably benign
Predicted Primers PCR Primer
(F):5'- CCAAAGATGCGTTTACTGCATGG -3'
(R):5'- GGCATCCTTGGTGCTATCAC -3'

Sequencing Primer
(F):5'- TTACTGCATGGCTGAGGC -3'
(R):5'- CATCCTTGGTGCTATCACGTTTGG -3'
Posted On 2014-10-01