Mutagenetix > Incidental Mutation

Incidental Mutation 'R2208:Rundc3a'

236788

Institutional Source

Beutler Lab

Gene Symbol

Rundc3a

Ensembl Gene

ENSMUSG00000006575

Gene Name

RUN domain containing 3A

Synonyms

Rpip8, Rap2ip

MMRRC Submission

040210-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.113) question?

Stock #

R2208 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

102393403-102402555 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 102402088 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Cysteine at position 436 (S436C)

Ref Sequence

ENSEMBL: ENSMUSP00000006750 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006750] [ENSMUST00000018821] [ENSMUST00000107098] [ENSMUST00000107102] [ENSMUST00000107103] [ENSMUST00000107105] [ENSMUST00000124755] [ENSMUST00000130436] [ENSMUST00000149777] [ENSMUST00000155104] [ENSMUST00000142097] [ENSMUST00000154001] [ENSMUST00000134669]

AlphaFold

O08576

Predicted Effect

probably damaging
Transcript: ENSMUST00000006750
AA Change: S436C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000006750
Gene: ENSMUSG00000006575
AA Change: S436C

Domain	Start	End	E-Value	Type
RUN	125	187	2.34e-19	SMART
coiled coil region	267	322	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000018821

SMART Domains

Protein: ENSMUSP00000018821
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	156	6.9e-23	PFAM
Pfam:Mito_carr	158	247	6.1e-19	PFAM
Pfam:Mito_carr	251	352	1.1e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107098

SMART Domains

Protein: ENSMUSP00000102715
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	148	1.4e-21	PFAM
Pfam:Mito_carr	150	240	3.7e-19	PFAM
Pfam:Mito_carr	243	344	4.6e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107102

SMART Domains

Protein: ENSMUSP00000102719
Gene: ENSMUSG00000006575

Domain	Start	End	E-Value	Type
RUN	125	187	2.34e-19	SMART
coiled coil region	267	322	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107103

SMART Domains

Protein: ENSMUSP00000102720
Gene: ENSMUSG00000006575

Domain	Start	End	E-Value	Type
RUN	120	182	2.34e-19	SMART
coiled coil region	262	317	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107105

SMART Domains

Protein: ENSMUSP00000102722
Gene: ENSMUSG00000006575

Domain	Start	End	E-Value	Type
RUN	125	187	2.34e-19	SMART
coiled coil region	267	320	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123688

Predicted Effect

probably benign
Transcript: ENSMUST00000124755

SMART Domains

Protein: ENSMUSP00000120021
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	71	1.3e-9	PFAM
Pfam:Mito_carr	92	152	9.7e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128331

Predicted Effect

probably benign
Transcript: ENSMUST00000128825

SMART Domains

Protein: ENSMUSP00000121790
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	35	77	6.5e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130436

SMART Domains

Protein: ENSMUSP00000115087
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	70	1.8e-9	PFAM
Pfam:Mito_carr	92	156	5.7e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131219

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132876

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141535

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147860

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146330

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147160

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150982

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183859

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142157

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153395

Predicted Effect

probably benign
Transcript: ENSMUST00000149777

SMART Domains

Protein: ENSMUSP00000115365
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	70	2.7e-9	PFAM
Pfam:Mito_carr	92	156	8.7e-15	PFAM
Pfam:Mito_carr	158	220	6.5e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000155104

SMART Domains

Protein: ENSMUSP00000115445
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	69	3.7e-9	PFAM
Pfam:Mito_carr	92	156	1.2e-14	PFAM
Pfam:Mito_carr	158	248	5.4e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142097

SMART Domains

Protein: ENSMUSP00000114365
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	63	2e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000154001

SMART Domains

Protein: ENSMUSP00000116336
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	70	3.1e-10	PFAM
Pfam:Mito_carr	92	156	9.8e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000134669

SMART Domains

Protein: ENSMUSP00000114481
Gene: ENSMUSG00000018677

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	7	69	1.9e-10	PFAM

Meta Mutation Damage Score

0.1971

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.6%
20x: 96.0%

Validation Efficiency

98% (51/52)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410089E03Rik	T	A	15: 8,194,403	N883K	probably benign	Het
Ahnak	T	C	19: 9,017,732	V5460A	probably benign	Het
Bco2	A	G	9: 50,533,455	V517A	probably damaging	Het
Brca2	T	A	5: 150,532,344	D183E	probably damaging	Het
Ccdc142	T	C	6: 83,107,960		probably null	Het
Ccdc39	A	G	3: 33,841,178	L34P	probably damaging	Het
Cdc42bpb	T	A	12: 111,336,029	H198L	probably damaging	Het
Cdc73	T	A	1: 143,609,382	E516V	probably damaging	Het
Cep170b	T	A	12: 112,738,985	L1059Q	probably benign	Het
Chrm1	T	C	19: 8,678,099	L56P	probably damaging	Het
Clec4d	T	A	6: 123,265,355	V22D	probably damaging	Het
Cyp2c39	T	C	19: 39,560,961	Y308H	possibly damaging	Het
Cyp2d12	T	C	15: 82,556,936	L141P	probably damaging	Het
Cyp4x1	G	T	4: 115,126,594	Q85K	probably benign	Het
Dpysl5	G	A	5: 30,791,597	D399N	probably damaging	Het
Enpp7	T	C	11: 118,988,762		probably benign	Het
Fabp3	C	T	4: 130,312,387	T57I	probably benign	Het
Fitm2	T	A	2: 163,472,684		probably benign	Het
Gm14139	T	A	2: 150,193,145	V462E	probably benign	Het
Gng10	T	A	4: 59,035,314	I26N	possibly damaging	Het
Gpr33	C	T	12: 52,023,453	V268I	probably benign	Het
Hmcn2	G	A	2: 31,380,297	C1182Y	probably damaging	Het
Kcnh8	GAGACCAACGAGCAGCTGATGCTTCAGA	GAGA	17: 52,725,906	74	probably benign	Het
Krt36	C	T	11: 100,102,939	V358M	probably damaging	Het
Lmod3	T	C	6: 97,247,877	I328V	probably benign	Het
Lrp8	T	C	4: 107,855,790	V580A	probably damaging	Het
Masp2	T	C	4: 148,614,415	I651T	probably damaging	Het
Mnd1	C	A	3: 84,134,109	C62F	probably benign	Het
Msi2	A	T	11: 88,590,108	S118T	probably damaging	Het
Muc19	T	C	15: 91,871,549		noncoding transcript	Het
Nabp1	G	A	1: 51,477,614	R32*	probably null	Het
Nfix	CAAAAA	CAAAA	8: 84,716,247		probably null	Het
Nup88	T	C	11: 70,965,719	D196G	probably damaging	Het
Olfr747	T	C	14: 50,681,563	I24V	probably benign	Het
Pax1	T	A	2: 147,365,802	I198N	probably damaging	Het
Pde3a	A	G	6: 141,250,347	E253G	probably damaging	Het
Phldb1	C	T	9: 44,696,131	R1192Q	probably damaging	Het
Pianp	C	A	6: 124,999,639	P137Q	probably damaging	Het
Prdm15	A	C	16: 97,799,264		probably null	Het
Ptprf	A	T	4: 118,269,172		probably benign	Het
Rfx7	A	G	9: 72,617,964	D812G	probably benign	Het
Rgs22	T	C	15: 36,050,232	T691A	probably benign	Het
Sntb1	T	C	15: 55,906,318	T92A	possibly damaging	Het
Tarsl2	T	C	7: 65,682,848	S566P	probably damaging	Het
Tbc1d32	A	T	10: 56,150,792		probably null	Het
Tep1	T	C	14: 50,866,864	Q191R	probably benign	Het
Tmc2	C	A	2: 130,214,563		probably null	Het
Tns1	A	C	1: 74,079,240	I77S	probably damaging	Het
Trpd52l3	T	C	19: 30,004,246	W134R	probably damaging	Het
Vmn2r15	A	C	5: 109,297,443	N38K	possibly damaging	Het
Wdr90	A	T	17: 25,860,388	D257E	probably damaging	Het
Zbtb9	T	C	17: 26,974,124	C168R	possibly damaging	Het

Other mutations in Rundc3a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01150:Rundc3a	APN	11	102393776	missense	probably benign	0.43
IGL02206:Rundc3a	APN	11	102399634	nonsense	probably null
IGL02306:Rundc3a	APN	11	102400938	missense	probably damaging	1.00
IGL02838:Rundc3a	APN	11	102397695	splice site	probably benign
R0173:Rundc3a	UTSW	11	102398245	unclassified	probably benign
R1745:Rundc3a	UTSW	11	102400913	frame shift	probably null
R1746:Rundc3a	UTSW	11	102400913	frame shift	probably null
R2366:Rundc3a	UTSW	11	102397665	missense	probably damaging	1.00
R2994:Rundc3a	UTSW	11	102400663	missense	probably damaging	1.00
R3755:Rundc3a	UTSW	11	102399259	missense	possibly damaging	0.48
R3756:Rundc3a	UTSW	11	102399259	missense	possibly damaging	0.48
R5519:Rundc3a	UTSW	11	102402031	missense	probably benign	0.01
R5748:Rundc3a	UTSW	11	102399399	missense	possibly damaging	0.63
R6361:Rundc3a	UTSW	11	102400795	missense	probably damaging	1.00
R6722:Rundc3a	UTSW	11	102399949	missense	possibly damaging	0.73
R6819:Rundc3a	UTSW	11	102398461	nonsense	probably null
R7324:Rundc3a	UTSW	11	102399973	missense	possibly damaging	0.80
R7369:Rundc3a	UTSW	11	102399895	missense	probably damaging	1.00
R7437:Rundc3a	UTSW	11	102398404	missense	probably damaging	1.00
R7439:Rundc3a	UTSW	11	102400046	critical splice donor site	probably null
R7441:Rundc3a	UTSW	11	102400046	critical splice donor site	probably null
R7542:Rundc3a	UTSW	11	102400045	missense	probably benign	0.44
R7802:Rundc3a	UTSW	11	102400009	missense	probably benign	0.18
R9144:Rundc3a	UTSW	11	102400036	missense	probably benign	0.04
R9356:Rundc3a	UTSW	11	102402064	missense	probably damaging	1.00
R9657:Rundc3a	UTSW	11	102400752	missense	probably benign	0.01
Z1176:Rundc3a	UTSW	11	102400991	missense	probably benign	0.02
Z1177:Rundc3a	UTSW	11	102398452	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ACAGATGCTCCAGAAGAGGC -3'
(R):5'- TTGGGTCATCTTTCCCTAGAGAC -3'

Sequencing Primer
(F):5'- TCCAGAAGAGGCCACGTC -3'
(R):5'- ATCTTTCCCTAGAGACCCGAGG -3'

Posted On

2014-10-02