Mutagenetix > Incidental Mutation

Incidental Mutation 'R2176:Rrp1b'

236909

Institutional Source

Beutler Lab

Gene Symbol

Rrp1b

Ensembl Gene

ENSMUSG00000058392

Gene Name

ribosomal RNA processing 1 homolog B (S. cerevisiae)

Synonyms

MMRRC Submission

040178-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2176 (G1)

Quality Score

189

Status

Validated

Chromosome

Chromosomal Location

32036100-32062865 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 32056560 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 360 (D360E)

Ref Sequence

ENSEMBL: ENSMUSP00000080085 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000081339] [ENSMUST00000150469]

AlphaFold

Q91YK2

Predicted Effect

probably benign
Transcript: ENSMUST00000081339
AA Change: D360E

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000080085
Gene: ENSMUSG00000058392
AA Change: D360E

Domain	Start	End	E-Value	Type
Pfam:Nop52	10	218	3.3e-73	PFAM
low complexity region	344	352	N/A	INTRINSIC
low complexity region	376	384	N/A	INTRINSIC
low complexity region	450	463	N/A	INTRINSIC
low complexity region	483	496	N/A	INTRINSIC
low complexity region	694	706	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126602

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136094

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137917

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147076

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149746

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150151

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150187

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150469

SMART Domains

Protein: ENSMUSP00000117400
Gene: ENSMUSG00000058392

Domain	Start	End	E-Value	Type
low complexity region	96	107	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.6%

Validation Efficiency

100% (64/64)

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1300017J02Rik	A	G	9: 103,259,367 (GRCm38)		probably benign	Het
Adam1a	T	A	5: 121,519,586 (GRCm38)	Y548F	probably benign	Het
Armc9	T	C	1: 86,199,892 (GRCm38)	L83P	probably damaging	Het
BC051665	A	T	13: 60,784,530 (GRCm38)		probably benign	Het
Casp3	A	G	8: 46,629,756 (GRCm38)	N3S	probably damaging	Het
Ccdc174	G	A	6: 91,888,089 (GRCm38)	M109I	probably benign	Het
Ccr6	T	A	17: 8,256,241 (GRCm38)	F93I	probably damaging	Het
Clvs2	T	C	10: 33,595,815 (GRCm38)	S165G	probably damaging	Het
Cntnap5c	T	C	17: 58,013,946 (GRCm38)	V171A	probably benign	Het
Dennd5a	C	A	7: 109,905,120 (GRCm38)		probably null	Het
Dock2	T	A	11: 34,695,217 (GRCm38)	Y546F	probably benign	Het
Fat2	A	G	11: 55,267,575 (GRCm38)		probably null	Het
Focad	T	A	4: 88,279,244 (GRCm38)	Y625N	unknown	Het
Fyb	A	G	15: 6,579,954 (GRCm38)	K3E	probably damaging	Het
Gm14496	G	A	2: 181,991,337 (GRCm38)	D38N	probably benign	Het
Gm20403	T	C	12: 54,986,370 (GRCm38)	T54A	probably benign	Het
Gm9830	A	G	9: 44,464,259 (GRCm38)		noncoding transcript	Het
Hectd1	A	T	12: 51,745,494 (GRCm38)	S2487R	probably damaging	Het
Il5ra	A	G	6: 106,738,272 (GRCm38)	L175S	probably benign	Het
Itgav	C	T	2: 83,803,255 (GRCm38)	R983C	probably damaging	Het
Kcna10	T	C	3: 107,194,716 (GRCm38)	V221A	probably damaging	Het
Kif13b	G	A	14: 64,669,671 (GRCm38)	V35I	probably benign	Het
Kif6	G	A	17: 49,755,230 (GRCm38)	E473K	probably damaging	Het
Mfsd14a	T	C	3: 116,632,393 (GRCm38)	T452A	probably benign	Het
Mllt1	A	G	17: 56,897,398 (GRCm38)	S382P	probably benign	Het
Myo15b	T	C	11: 115,866,572 (GRCm38)	W1083R	probably damaging	Het
Nell2	T	C	15: 95,435,157 (GRCm38)	I174V	probably damaging	Het
Noct	G	A	3: 51,249,696 (GRCm38)		probably null	Het
Nvl	A	T	1: 181,135,074 (GRCm38)		probably benign	Het
Ofcc1	T	C	13: 40,097,119 (GRCm38)	S574G	probably benign	Het
Olfr1248	A	T	2: 89,617,580 (GRCm38)	M204K	possibly damaging	Het
Olfr512	G	A	7: 108,714,132 (GRCm38)	V248I	probably damaging	Het
Olfr749	T	C	14: 50,736,224 (GRCm38)	M313V	probably benign	Het
Pip5k1a	A	T	3: 95,065,496 (GRCm38)	S415T	probably damaging	Het
Pkhd1	G	A	1: 20,553,517 (GRCm38)	P785S	probably damaging	Het
Plcg2	A	G	8: 117,612,994 (GRCm38)	Y1048C	probably damaging	Het
Ppp3cb	A	T	14: 20,520,652 (GRCm38)	V337E	probably benign	Het
Prkg2	T	C	5: 98,966,509 (GRCm38)		probably benign	Het
Prl7a2	T	G	13: 27,659,106 (GRCm38)	Y238S	probably benign	Het
Psg28	T	A	7: 18,427,879 (GRCm38)	D233V	probably damaging	Het
Rad50	A	G	11: 53,698,209 (GRCm38)	C221R	probably benign	Het
Rgl3	A	G	9: 21,975,958 (GRCm38)		probably benign	Het
Rgsl1	T	A	1: 153,825,268 (GRCm38)		probably benign	Het
Ror1	C	A	4: 100,441,874 (GRCm38)	R815S	probably damaging	Het
Ryr3	T	C	2: 112,666,335 (GRCm38)	Q3682R	possibly damaging	Het
Sdr42e1	A	T	8: 117,662,877 (GRCm38)	F342I	possibly damaging	Het
Setd5	A	G	6: 113,151,153 (GRCm38)	R1337G	probably benign	Het
Siglecf	T	C	7: 43,351,716 (GRCm38)	V36A	probably damaging	Het
Slc4a5	G	A	6: 83,262,560 (GRCm38)	G152D	probably damaging	Het
Sptbn4	T	G	7: 27,364,162 (GRCm38)	M2280L	probably benign	Het
Syngr2	T	C	11: 117,812,580 (GRCm38)	I74T	probably damaging	Het
Tm9sf1	T	C	14: 55,641,409 (GRCm38)	I175M	possibly damaging	Het
Tmc3	A	G	7: 83,609,308 (GRCm38)	E502G	probably damaging	Het
Tph1	T	A	7: 46,662,039 (GRCm38)	D88V	possibly damaging	Het
Tpr	A	G	1: 150,419,940 (GRCm38)	K979E	possibly damaging	Het
Usp47	A	G	7: 112,092,727 (GRCm38)	T799A	probably benign	Het
Utf1	A	G	7: 139,944,007 (GRCm38)	E45G	possibly damaging	Het
Vmn1r208	A	T	13: 22,772,602 (GRCm38)	C242S	probably damaging	Het
Wrnip1	T	C	13: 32,820,240 (GRCm38)	I498T	probably damaging	Het
Ypel2	T	A	11: 86,971,873 (GRCm38)	H18L	probably benign	Het
Zan	T	G	5: 137,421,848 (GRCm38)	D2849A	unknown	Het
Zfp647	A	T	15: 76,911,660 (GRCm38)	F267I	probably damaging	Het
Zfp786	G	T	6: 47,820,971 (GRCm38)	H344Q	possibly damaging	Het
Zswim3	G	T	2: 164,820,694 (GRCm38)	A365S	probably benign	Het
Zswim5	T	C	4: 116,973,041 (GRCm38)	W538R	probably damaging	Het

Other mutations in Rrp1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01114:Rrp1b	APN	17	32,052,819 (GRCm38)	missense	probably benign	0.09
IGL01383:Rrp1b	APN	17	32,058,578 (GRCm38)	missense	probably damaging	0.99
IGL02740:Rrp1b	APN	17	32,059,331 (GRCm38)	missense	probably damaging	1.00
IGL03030:Rrp1b	APN	17	32,056,901 (GRCm38)	missense	probably damaging	1.00
IGL03181:Rrp1b	APN	17	32,057,176 (GRCm38)	missense	probably benign	0.13
IGL03396:Rrp1b	APN	17	32,057,263 (GRCm38)	splice site	probably benign
IGL02980:Rrp1b	UTSW	17	32,050,039 (GRCm38)	missense	possibly damaging	0.49
R0138:Rrp1b	UTSW	17	32,060,452 (GRCm38)	missense	probably benign	0.24
R0394:Rrp1b	UTSW	17	32,058,564 (GRCm38)	missense	probably benign	0.34
R0681:Rrp1b	UTSW	17	32,060,395 (GRCm38)	missense	probably damaging	1.00
R1315:Rrp1b	UTSW	17	32,056,639 (GRCm38)	missense	probably benign	0.00
R1351:Rrp1b	UTSW	17	32,056,637 (GRCm38)	missense	possibly damaging	0.82
R1700:Rrp1b	UTSW	17	32,057,204 (GRCm38)	missense	probably benign	0.19
R1815:Rrp1b	UTSW	17	32,056,811 (GRCm38)	missense	probably benign
R1940:Rrp1b	UTSW	17	32,056,845 (GRCm38)	missense	possibly damaging	0.95
R2352:Rrp1b	UTSW	17	32,059,328 (GRCm38)	missense	possibly damaging	0.71
R2975:Rrp1b	UTSW	17	32,058,573 (GRCm38)	missense	probably damaging	1.00
R4552:Rrp1b	UTSW	17	32,056,010 (GRCm38)	splice site	probably benign
R5114:Rrp1b	UTSW	17	32,036,471 (GRCm38)	utr 5 prime	probably benign
R5242:Rrp1b	UTSW	17	32,051,703 (GRCm38)	missense	possibly damaging	0.82
R5647:Rrp1b	UTSW	17	32,056,011 (GRCm38)	splice site	probably benign
R5739:Rrp1b	UTSW	17	32,045,976 (GRCm38)	missense	probably damaging	1.00
R5853:Rrp1b	UTSW	17	32,056,684 (GRCm38)	missense	possibly damaging	0.49
R5878:Rrp1b	UTSW	17	32,047,675 (GRCm38)	missense	probably damaging	1.00
R6389:Rrp1b	UTSW	17	32,056,627 (GRCm38)	missense	possibly damaging	0.55
R6734:Rrp1b	UTSW	17	32,055,304 (GRCm38)	intron	probably benign
R6742:Rrp1b	UTSW	17	32,056,934 (GRCm38)	missense	probably benign
R6759:Rrp1b	UTSW	17	32,057,089 (GRCm38)	missense	probably benign	0.01
R6855:Rrp1b	UTSW	17	32,052,745 (GRCm38)	missense	probably benign	0.00
R7014:Rrp1b	UTSW	17	32,049,427 (GRCm38)	missense	probably damaging	1.00
R7315:Rrp1b	UTSW	17	32,058,571 (GRCm38)	missense	probably benign	0.03
R7689:Rrp1b	UTSW	17	32,055,926 (GRCm38)	missense	probably benign	0.38
R7834:Rrp1b	UTSW	17	32,051,724 (GRCm38)	missense	probably benign	0.00
R7993:Rrp1b	UTSW	17	32,058,567 (GRCm38)	missense	probably damaging	0.98
R8272:Rrp1b	UTSW	17	32,057,189 (GRCm38)	missense	probably benign
R8371:Rrp1b	UTSW	17	32,049,484 (GRCm38)	missense	possibly damaging	0.66
R8885:Rrp1b	UTSW	17	32,051,714 (GRCm38)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- AGACCCTGTCTCTAGAGGAGTG -3'
(R):5'- TGCTGTAGGCTCAGTCACAC -3'

Sequencing Primer
(F):5'- GATGCTGTGCACCTGTATTCCTG -3'
(R):5'- TAGGCTCAGTCACACACGCTTG -3'

Posted On

2014-10-02