Incidental Mutation 'R2171:Rnf138'
ID237514
Institutional Source Beutler Lab
Gene Symbol Rnf138
Ensembl Gene ENSMUSG00000024317
Gene Namering finger protein 138
Synonyms2810480D20Rik, 2410015A17Rik, Trif-d
MMRRC Submission 040173-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R2171 (G1)
Quality Score225
Status Not validated
Chromosome18
Chromosomal Location21001341-21028223 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 21026086 bp
ZygosityHeterozygous
Amino Acid Change Asparagine to Aspartic acid at position 188 (N188D)
Ref Sequence ENSEMBL: ENSMUSP00000072626 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000052396] [ENSMUST00000072847]
Predicted Effect probably damaging
Transcript: ENSMUST00000052396
AA Change: N224D

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000056641
Gene: ENSMUSG00000024317
AA Change: N224D

DomainStartEndE-ValueType
RING 18 57 1.65e-5 SMART
ZnF_C2H2 157 180 1.62e0 SMART
RING 159 192 1.5e1 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000072847
AA Change: N188D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000072626
Gene: ENSMUSG00000024317
AA Change: N188D

DomainStartEndE-ValueType
RING 18 57 1.65e-5 SMART
ZnF_C2H2 157 180 1.62e0 SMART
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a RING finger, a motif present in a variety of functionally distinct proteins and known to be involved in protein-DNA and protein-protein interactions. Alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abt1 A G 13: 23,422,217 L189P probably damaging Het
Adgrl3 C A 5: 81,512,515 S377* probably null Het
Adgrv1 A G 13: 81,270,918 V5986A probably damaging Het
Arv1 T G 8: 124,728,355 C102W probably damaging Het
Asb18 T C 1: 89,968,697 H207R probably benign Het
Bach2 T C 4: 32,501,662 V13A probably damaging Het
Bccip T C 7: 133,719,114 S206P probably benign Het
Cdhr4 T C 9: 107,992,918 S41P probably benign Het
Chd7 A G 4: 8,752,424 Y307C probably damaging Het
Clec4f A T 6: 83,652,864 S237R possibly damaging Het
Cntnap5a A G 1: 116,188,402 D538G possibly damaging Het
Col9a2 T A 4: 121,045,001 C173* probably null Het
Ctr9 T A 7: 111,046,910 M703K possibly damaging Het
Cyp2a12 A G 7: 27,029,632 Y83C probably damaging Het
Eef1akmt3 A C 10: 127,032,974 D210E probably benign Het
Erbin A G 13: 103,834,958 F717L probably benign Het
Gtf3a A G 5: 146,955,462 N341S probably benign Het
Hltf T C 3: 20,059,081 V6A probably damaging Het
Itga6 T A 2: 71,820,014 Y135N probably damaging Het
Krt73 T C 15: 101,800,910 Q154R possibly damaging Het
Lce1a1 C T 3: 92,646,741 C142Y unknown Het
Lcorl A T 5: 45,747,151 I112N probably damaging Het
Ltbp1 C T 17: 75,291,317 H916Y probably damaging Het
Lypla2 T C 4: 135,970,604 probably null Het
Man1c1 G C 4: 134,703,438 P11R probably damaging Het
Mmp1a T A 9: 7,475,356 D375E probably damaging Het
Nlrp14 T G 7: 107,182,502 L302R probably damaging Het
Npy2r T G 3: 82,540,401 T243P possibly damaging Het
Olfr633 T C 7: 103,946,785 V73A probably damaging Het
Olfr749 A T 14: 50,736,419 S248T probably benign Het
Paqr9 A T 9: 95,560,878 H307L probably damaging Het
Phc3 T C 3: 30,950,929 T172A probably damaging Het
Pigs A G 11: 78,328,812 T39A probably damaging Het
Pik3c2g C T 6: 139,855,286 Q386* probably null Het
Pira2 T C 7: 3,844,418 S91G probably benign Het
Plxna2 T A 1: 194,800,617 N1539K probably damaging Het
Poc5 C T 13: 96,410,749 H507Y probably damaging Het
Pou2f1 A T 1: 165,880,356 probably benign Het
Pthlh T G 6: 147,257,196 K89Q probably damaging Het
Rims4 A T 2: 163,864,126 probably null Het
Rreb1 A G 13: 37,930,846 D727G probably benign Het
Sc5d T G 9: 42,255,386 K286Q probably benign Het
Slc10a5 C T 3: 10,335,282 G106D possibly damaging Het
Smg6 A T 11: 75,038,646 Q967L probably damaging Het
Spty2d1 C T 7: 46,994,613 R636H probably damaging Het
Srms A T 2: 181,208,780 Y195* probably null Het
Susd4 A G 1: 182,892,194 D458G probably benign Het
Tecta T C 9: 42,358,924 R1363G probably damaging Het
Thbs1 G A 2: 118,122,579 G890D probably damaging Het
Tpp2 T C 1: 43,957,446 V317A probably benign Het
Ttpa T C 4: 20,021,357 V175A probably damaging Het
Vps13b G T 15: 35,887,197 D3251Y probably benign Het
Vps54 A G 11: 21,298,810 D441G probably benign Het
Zfp738 A T 13: 67,670,977 Y298* probably null Het
Zfp804a G A 2: 82,257,183 C452Y possibly damaging Het
Zxdc A G 6: 90,382,479 K698E possibly damaging Het
Other mutations in Rnf138
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00900:Rnf138 APN 18 21020960 missense possibly damaging 0.91
IGL01099:Rnf138 APN 18 21020913 missense possibly damaging 0.50
IGL01471:Rnf138 APN 18 21024521 splice site probably null
R0655:Rnf138 UTSW 18 21010783 missense probably benign 0.00
R1103:Rnf138 UTSW 18 21026102 missense probably damaging 1.00
R1420:Rnf138 UTSW 18 21026102 missense probably damaging 1.00
R1993:Rnf138 UTSW 18 21024483 missense probably damaging 1.00
R4682:Rnf138 UTSW 18 21010734 missense probably damaging 1.00
R5074:Rnf138 UTSW 18 21026147 missense probably benign 0.36
R6866:Rnf138 UTSW 18 21002142 missense probably damaging 1.00
R7257:Rnf138 UTSW 18 21008693 intron probably null
Predicted Primers PCR Primer
(F):5'- AGTATAAAGTATCCTCTGCTGAGC -3'
(R):5'- AACTGTCTAGAGAATGGTATTAGGG -3'

Sequencing Primer
(F):5'- AGGCTCAAGGTATCCTCCTG -3'
(R):5'- CTAGAGAATGGTATTAGGGTGGCCC -3'
Posted On2014-10-02