Mutagenetix > Incidental Mutation

Incidental Mutation 'R0178:Grwd1'

23763

Institutional Source

Beutler Lab

Gene Symbol

Grwd1

Ensembl Gene

ENSMUSG00000053801

Gene Name

glutamate-rich WD repeat containing 1

Synonyms

WDR28

MMRRC Submission

038446-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.951) question?

Stock #

R0178 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

45474647-45480368 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 45480054 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 51 (E51G)

Ref Sequence

ENSEMBL: ENSMUSP00000148100 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000002848] [ENSMUST00000107723] [ENSMUST00000131384] [ENSMUST00000209484] [ENSMUST00000211265] [ENSMUST00000211713]

AlphaFold

Q810D6

Predicted Effect

probably benign
Transcript: ENSMUST00000002848

SMART Domains

Protein: ENSMUSP00000002848
Gene: ENSMUSG00000002771

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
low complexity region	33	47	N/A	INTRINSIC
low complexity region	60	73	N/A	INTRINSIC
Pfam:ANF_receptor	89	330	1.7e-12	PFAM
PBPe	428	823	4.11e-65	SMART
Lig_chan-Glu_bd	471	527	7.88e-18	SMART
transmembrane domain	843	862	N/A	INTRINSIC
low complexity region	896	931	N/A	INTRINSIC
low complexity region	932	943	N/A	INTRINSIC
low complexity region	969	1001	N/A	INTRINSIC
low complexity region	1011	1039	N/A	INTRINSIC
low complexity region	1065	1091	N/A	INTRINSIC
low complexity region	1095	1120	N/A	INTRINSIC
low complexity region	1192	1247	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107723
AA Change: E51G

PolyPhen 2 Score 0.792 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000103351
Gene: ENSMUSG00000053801
AA Change: E51G

Domain	Start	End	E-Value	Type
Pfam:CAF1C_H4-bd	42	113	8.6e-18	PFAM
low complexity region	123	136	N/A	INTRINSIC
Blast:WD40	138	179	1e-18	BLAST
WD40	203	243	1.58e-2	SMART
WD40	249	290	5.47e-6	SMART
WD40	297	336	2.22e-6	SMART
WD40	342	382	2.59e-7	SMART
Blast:WD40	404	442	1e-18	BLAST

Predicted Effect

possibly damaging
Transcript: ENSMUST00000131384
AA Change: E51G

PolyPhen 2 Score 0.792 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000116252
Gene: ENSMUSG00000053801
AA Change: E51G

Domain	Start	End	E-Value	Type
Pfam:CAF1C_H4-bd	44	112	2.7e-15	PFAM
low complexity region	123	136	N/A	INTRINSIC
Blast:WD40	138	179	1e-18	BLAST
WD40	203	243	1.58e-2	SMART
WD40	249	290	5.47e-6	SMART
WD40	297	336	2.22e-6	SMART
WD40	342	382	2.59e-7	SMART
Blast:WD40	404	442	1e-18	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209250

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209301

Predicted Effect

probably damaging
Transcript: ENSMUST00000209484
AA Change: E51G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210177

Predicted Effect

probably damaging
Transcript: ENSMUST00000211265
AA Change: E51G

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

Predicted Effect

probably benign
Transcript: ENSMUST00000211713

Meta Mutation Damage Score

0.3264

Coding Region Coverage

1x: 98.9%
3x: 98.1%
10x: 95.5%
20x: 88.8%

Validation Efficiency

95% (69/73)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a glutamate-rich protein that contains five WD-repeat motifs. The encoded protein may play a critical role in ribosome biogenesis and may also play a role in histone methylation through interactions with CUL4-DDB1 ubiquitin E3 ligase. [provided by RefSeq, Feb 2012]

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930596D02Rik	T	G	14: 35,533,435 (GRCm39)	N111T	probably benign	Het
Abca1	T	C	4: 53,081,953 (GRCm39)	D769G	possibly damaging	Het
Adcy6	G	T	15: 98,502,096 (GRCm39)	Q173K	probably benign	Het
Amotl1	G	A	9: 14,460,069 (GRCm39)	A890V	probably benign	Het
Arfgap2	C	T	2: 91,097,706 (GRCm39)	A141V	probably benign	Het
Asb2	G	A	12: 103,291,811 (GRCm39)	P324L	probably damaging	Het
Brd10	A	G	19: 29,732,188 (GRCm39)	S342P	probably damaging	Het
Cacna1g	G	A	11: 94,354,309 (GRCm39)	T202I	probably damaging	Het
Capn5	A	G	7: 97,782,098 (GRCm39)	L214P	probably damaging	Het
Cdh20	A	T	1: 104,902,776 (GRCm39)	D489V	possibly damaging	Het
Cers5	C	A	15: 99,644,905 (GRCm39)		probably benign	Het
Chct1	A	G	11: 85,069,264 (GRCm39)	H94R	probably benign	Het
Chrnb3	T	A	8: 27,883,392 (GRCm39)	V111D	probably damaging	Het
Clec2m	T	C	6: 129,303,786 (GRCm39)	R60G	probably benign	Het
Colec12	C	T	18: 9,858,921 (GRCm39)	P568L	unknown	Het
Cyp2r1	T	C	7: 114,149,643 (GRCm39)	E248G	probably damaging	Het
Dnaaf11	A	C	15: 66,325,950 (GRCm39)	D208E	probably benign	Het
Dnmt3b	A	G	2: 153,516,938 (GRCm39)	T536A	probably benign	Het
Eef2	G	A	10: 81,016,126 (GRCm39)	V496M	possibly damaging	Het
Fam118a	T	C	15: 84,930,081 (GRCm39)		probably benign	Het
Fer1l6	T	A	15: 58,509,763 (GRCm39)		probably null	Het
Fhad1	A	C	4: 141,682,651 (GRCm39)	F497V	probably benign	Het
Gbe1	G	A	16: 70,275,274 (GRCm39)	G358D	probably damaging	Het
Gdf10	A	G	14: 33,646,058 (GRCm39)	D69G	probably damaging	Het
Ggt6	A	G	11: 72,327,644 (GRCm39)	H150R	possibly damaging	Het
Gm45713	A	T	7: 44,783,882 (GRCm39)	L110Q	probably damaging	Het
Gm9847	T	C	12: 14,544,649 (GRCm39)		noncoding transcript	Het
Gvin3	A	T	7: 106,201,028 (GRCm39)	Y739N	probably damaging	Het
H13	A	G	2: 152,522,987 (GRCm39)	Y100C	probably damaging	Het
Kcne1	A	C	16: 92,145,697 (GRCm39)	M49R	probably damaging	Het
Kcnma1	C	T	14: 23,576,835 (GRCm39)	R236H	probably damaging	Het
Knl1	T	A	2: 118,888,886 (GRCm39)		probably benign	Het
Krt40	T	C	11: 99,432,565 (GRCm39)	I150M	probably damaging	Het
Ldb2	A	T	5: 44,630,841 (GRCm39)	V300E	probably damaging	Het
Lrp1b	A	T	2: 40,615,919 (GRCm39)	C3606S	probably damaging	Het
Lrrc42	A	G	4: 107,104,917 (GRCm39)	I16T	probably damaging	Het
Mtus1	G	T	8: 41,455,398 (GRCm39)	L87I	possibly damaging	Het
Myot	T	C	18: 44,470,053 (GRCm39)	F10S	probably damaging	Het
Nrg3	A	T	14: 38,098,413 (GRCm39)	H480Q	probably damaging	Het
Or52b2	G	A	7: 104,986,129 (GRCm39)	R265C	probably benign	Het
Or5ac23	A	T	16: 59,149,783 (GRCm39)	F30I	probably damaging	Het
Prl2c5	A	T	13: 13,366,390 (GRCm39)	D220V	probably damaging	Het
Rbm17	G	A	2: 11,592,590 (GRCm39)	S295L	probably benign	Het
Serpina6	A	G	12: 103,613,172 (GRCm39)	I376T	probably damaging	Het
Sh2d2a	A	T	3: 87,756,730 (GRCm39)	T192S	probably benign	Het
Slc27a1	T	C	8: 72,037,106 (GRCm39)	Y417H	possibly damaging	Het
Slc6a1	T	G	6: 114,281,813 (GRCm39)	I32S	possibly damaging	Het
Sntb1	T	C	15: 55,769,540 (GRCm39)	T150A	probably damaging	Het
Tanc1	T	A	2: 59,665,791 (GRCm39)	C1183*	probably null	Het
Tmprss7	C	A	16: 45,511,206 (GRCm39)	W57C	probably damaging	Het
Ubac1	A	T	2: 25,911,440 (GRCm39)	V36E	possibly damaging	Het
Zfc3h1	T	C	10: 115,242,630 (GRCm39)		probably benign	Het
Zfp644	C	T	5: 106,784,771 (GRCm39)	C592Y	probably damaging	Het

Other mutations in Grwd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00715:Grwd1	APN	7	45,480,037 (GRCm39)	missense	probably damaging	1.00
IGL01443:Grwd1	APN	7	45,479,834 (GRCm39)	critical splice acceptor site	probably null
IGL01459:Grwd1	APN	7	45,479,834 (GRCm39)	critical splice acceptor site	probably null
IGL02139:Grwd1	APN	7	45,476,667 (GRCm39)	missense	probably damaging	1.00
IGL03009:Grwd1	APN	7	45,476,561 (GRCm39)	splice site	probably benign
R0334:Grwd1	UTSW	7	45,476,601 (GRCm39)	splice site	probably null
R4392:Grwd1	UTSW	7	45,477,204 (GRCm39)	missense	probably damaging	1.00
R5133:Grwd1	UTSW	7	45,475,298 (GRCm39)	missense	probably benign	0.27
R5146:Grwd1	UTSW	7	45,477,258 (GRCm39)	missense	probably damaging	1.00
R5378:Grwd1	UTSW	7	45,479,505 (GRCm39)	missense	probably benign	0.00
R5554:Grwd1	UTSW	7	45,480,064 (GRCm39)	missense	probably damaging	1.00
R7177:Grwd1	UTSW	7	45,480,204 (GRCm39)	start codon destroyed	probably null	0.77
R7790:Grwd1	UTSW	7	45,475,438 (GRCm39)	missense	probably damaging	1.00
R8377:Grwd1	UTSW	7	45,480,036 (GRCm39)	missense	probably damaging	1.00
R8859:Grwd1	UTSW	7	45,475,298 (GRCm39)	missense	probably benign	0.27
R8929:Grwd1	UTSW	7	45,480,056 (GRCm39)	missense	probably damaging	1.00
R9261:Grwd1	UTSW	7	45,475,381 (GRCm39)	missense	probably benign	0.00
R9640:Grwd1	UTSW	7	45,477,303 (GRCm39)	missense	probably benign
R9681:Grwd1	UTSW	7	45,479,473 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- TGTCGCCCAAGTGATCTCGAAC -3'
(R):5'- ACAGTACAGTGGGACGGGTCTTAG -3'

Sequencing Primer
(F):5'- GTGATCTCGAACTATGTCAAAGCTG -3'
(R):5'- AAGTGACGCTCTCACTTCG -3'

Posted On

2013-04-16