Mutagenetix > Incidental Mutation

Incidental Mutation 'R0178:Chct1'

23771

Institutional Source

Beutler Lab

Gene Symbol

Chct1

Ensembl Gene

ENSMUSG00000018479

Gene Name

CHD1 helical C-terminal domain containing 1

Synonyms

1700125H20Rik

MMRRC Submission

038446-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.096) question?

Stock #

R0178 (G1)

Quality Score

216

Status

Validated (trace)

Chromosome

Chromosomal Location

85061230-85071971 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 85069264 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Arginine at position 94 (H94R)

Ref Sequence

ENSEMBL: ENSMUSP00000098248 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000018623] [ENSMUST00000100681]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000018623
AA Change: H204R

PolyPhen 2 Score 0.089 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000018623
Gene: ENSMUSG00000018479
AA Change: H204R

Domain	Start	End	E-Value	Type
DUF4208	31	134	1.43e-35	SMART
low complexity region	211	230	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000100681
AA Change: H94R

PolyPhen 2 Score 0.089 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000098248
Gene: ENSMUSG00000018479
AA Change: H94R

Domain	Start	End	E-Value	Type
Blast:DUF4208	1	24	1e-7	BLAST
low complexity region	101	120	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 98.9%
3x: 98.1%
10x: 95.5%
20x: 88.8%

Validation Efficiency

95% (69/73)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930596D02Rik	T	G	14: 35,533,435 (GRCm39)	N111T	probably benign	Het
Abca1	T	C	4: 53,081,953 (GRCm39)	D769G	possibly damaging	Het
Adcy6	G	T	15: 98,502,096 (GRCm39)	Q173K	probably benign	Het
Amotl1	G	A	9: 14,460,069 (GRCm39)	A890V	probably benign	Het
Arfgap2	C	T	2: 91,097,706 (GRCm39)	A141V	probably benign	Het
Asb2	G	A	12: 103,291,811 (GRCm39)	P324L	probably damaging	Het
Brd10	A	G	19: 29,732,188 (GRCm39)	S342P	probably damaging	Het
Cacna1g	G	A	11: 94,354,309 (GRCm39)	T202I	probably damaging	Het
Capn5	A	G	7: 97,782,098 (GRCm39)	L214P	probably damaging	Het
Cdh20	A	T	1: 104,902,776 (GRCm39)	D489V	possibly damaging	Het
Cers5	C	A	15: 99,644,905 (GRCm39)		probably benign	Het
Chrnb3	T	A	8: 27,883,392 (GRCm39)	V111D	probably damaging	Het
Clec2m	T	C	6: 129,303,786 (GRCm39)	R60G	probably benign	Het
Colec12	C	T	18: 9,858,921 (GRCm39)	P568L	unknown	Het
Cyp2r1	T	C	7: 114,149,643 (GRCm39)	E248G	probably damaging	Het
Dnaaf11	A	C	15: 66,325,950 (GRCm39)	D208E	probably benign	Het
Dnmt3b	A	G	2: 153,516,938 (GRCm39)	T536A	probably benign	Het
Eef2	G	A	10: 81,016,126 (GRCm39)	V496M	possibly damaging	Het
Fam118a	T	C	15: 84,930,081 (GRCm39)		probably benign	Het
Fer1l6	T	A	15: 58,509,763 (GRCm39)		probably null	Het
Fhad1	A	C	4: 141,682,651 (GRCm39)	F497V	probably benign	Het
Gbe1	G	A	16: 70,275,274 (GRCm39)	G358D	probably damaging	Het
Gdf10	A	G	14: 33,646,058 (GRCm39)	D69G	probably damaging	Het
Ggt6	A	G	11: 72,327,644 (GRCm39)	H150R	possibly damaging	Het
Gm45713	A	T	7: 44,783,882 (GRCm39)	L110Q	probably damaging	Het
Gm9847	T	C	12: 14,544,649 (GRCm39)		noncoding transcript	Het
Grwd1	T	C	7: 45,480,054 (GRCm39)	E51G	probably damaging	Het
Gvin3	A	T	7: 106,201,028 (GRCm39)	Y739N	probably damaging	Het
H13	A	G	2: 152,522,987 (GRCm39)	Y100C	probably damaging	Het
Kcne1	A	C	16: 92,145,697 (GRCm39)	M49R	probably damaging	Het
Kcnma1	C	T	14: 23,576,835 (GRCm39)	R236H	probably damaging	Het
Knl1	T	A	2: 118,888,886 (GRCm39)		probably benign	Het
Krt40	T	C	11: 99,432,565 (GRCm39)	I150M	probably damaging	Het
Ldb2	A	T	5: 44,630,841 (GRCm39)	V300E	probably damaging	Het
Lrp1b	A	T	2: 40,615,919 (GRCm39)	C3606S	probably damaging	Het
Lrrc42	A	G	4: 107,104,917 (GRCm39)	I16T	probably damaging	Het
Mtus1	G	T	8: 41,455,398 (GRCm39)	L87I	possibly damaging	Het
Myot	T	C	18: 44,470,053 (GRCm39)	F10S	probably damaging	Het
Nrg3	A	T	14: 38,098,413 (GRCm39)	H480Q	probably damaging	Het
Or52b2	G	A	7: 104,986,129 (GRCm39)	R265C	probably benign	Het
Or5ac23	A	T	16: 59,149,783 (GRCm39)	F30I	probably damaging	Het
Prl2c5	A	T	13: 13,366,390 (GRCm39)	D220V	probably damaging	Het
Rbm17	G	A	2: 11,592,590 (GRCm39)	S295L	probably benign	Het
Serpina6	A	G	12: 103,613,172 (GRCm39)	I376T	probably damaging	Het
Sh2d2a	A	T	3: 87,756,730 (GRCm39)	T192S	probably benign	Het
Slc27a1	T	C	8: 72,037,106 (GRCm39)	Y417H	possibly damaging	Het
Slc6a1	T	G	6: 114,281,813 (GRCm39)	I32S	possibly damaging	Het
Sntb1	T	C	15: 55,769,540 (GRCm39)	T150A	probably damaging	Het
Tanc1	T	A	2: 59,665,791 (GRCm39)	C1183*	probably null	Het
Tmprss7	C	A	16: 45,511,206 (GRCm39)	W57C	probably damaging	Het
Ubac1	A	T	2: 25,911,440 (GRCm39)	V36E	possibly damaging	Het
Zfc3h1	T	C	10: 115,242,630 (GRCm39)		probably benign	Het
Zfp644	C	T	5: 106,784,771 (GRCm39)	C592Y	probably damaging	Het

Other mutations in Chct1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01490:Chct1	APN	11	85,069,138 (GRCm39)	missense	probably damaging	0.97
IGL01745:Chct1	APN	11	85,063,696 (GRCm39)	missense	probably benign	0.02
R1614:Chct1	UTSW	11	85,063,690 (GRCm39)	missense	possibly damaging	0.46
R3161:Chct1	UTSW	11	85,064,110 (GRCm39)	missense	probably damaging	0.98
R5707:Chct1	UTSW	11	85,064,138 (GRCm39)	missense	probably benign	0.39
R5796:Chct1	UTSW	11	85,064,101 (GRCm39)	missense	probably null	0.77
R6033:Chct1	UTSW	11	85,069,198 (GRCm39)	missense	probably damaging	1.00
R6033:Chct1	UTSW	11	85,069,198 (GRCm39)	missense	probably damaging	1.00
R8829:Chct1	UTSW	11	85,062,037 (GRCm39)	missense	probably damaging	0.98
R8832:Chct1	UTSW	11	85,062,037 (GRCm39)	missense	probably damaging	0.98
R8970:Chct1	UTSW	11	85,069,246 (GRCm39)	missense	probably benign
X0066:Chct1	UTSW	11	85,069,175 (GRCm39)	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- TGGATTCCATTTCAGGCCGCAC -3'
(R):5'- CAGCTTCTCAGTCCACTGTCCAAG -3'

Sequencing Primer
(F):5'- GCACTCTGCCCCTTGGATG -3'
(R):5'- AGGCTTTCCCCCAGTGTC -3'

Posted On

2013-04-16